ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154305.2| Mus musculus BAC clone RP24-492C11 from chromosom... 42 0.77
2emb|CR558303.7| Zebrafish DNA sequence from clone CH211-183C15 i... 42 0.77
3dbj|AK172755.1| Homo sapiens cDNA FLJ23916 fis, clone COL00117 42 0.77
4dbj|AK074231.1| Homo sapiens cDNA FLJ23651 fis, clone COL08363 42 0.77
5dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.77
6emb|BX005419.6| Zebrafish DNA sequence from clone DKEY-199L1 in ... 42 0.77
7emb|AL163192.6|HS298E2 Homo sapiens chromosome 9 BAC RP11-298E2,... 42 0.77
8emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on ch... 42 0.77
9gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosom... 40 3.1
10gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Can... 40 3.1
11gb|AC158641.12| Mus musculus 10 BAC RP23-461E22 (Roswell Park Ca... 40 3.1
12gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosom... 40 3.1
13gb|BC088000.1| Xenopus tropicalis suppression of tumorigenicity ... 40 3.1
14gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, com... 40 3.1
15gb|AC122530.3| Mus musculus BAC clone RP24-531C7 from chromosome... 40 3.1
16emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.1
17emb|AL359263.13| Human DNA sequence from clone RP13-88F20 on chr... 40 3.1
18ref|NM_001011286.1| Xenopus tropicalis suppression of tumorigeni... 40 3.1
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
20gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complet... 40 3.1
21emb|BX901900.20| Zebrafish DNA sequence from clone CH211-189A21 ... 40 3.1
22emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chro... 40 3.1

>gb|AC154305.2| Mus musculus BAC clone RP24-492C11 from chromosome 14, complete sequence
          Length = 181910

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     acacaaacatgtacatacaga 41
              |||||||||||||||||||||
Sbjct: 124079 acacaaacatgtacatacaga 124099



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>emb|CR558303.7| Zebrafish DNA sequence from clone CH211-183C15 in linkage group 13,
            complete sequence
          Length = 155098

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 7    actgcatttattggacacaaa 27
            |||||||||||||||||||||
Sbjct: 6113 actgcatttattggacacaaa 6093



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>dbj|AK172755.1| Homo sapiens cDNA FLJ23916 fis, clone COL00117
          Length = 4729

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  cctggccttacaaaacaaaag 142
            |||||||||||||||||||||
Sbjct: 3808 cctggccttacaaaacaaaag 3828



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>dbj|AK074231.1| Homo sapiens cDNA FLJ23651 fis, clone COL08363
          Length = 4729

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  cctggccttacaaaacaaaag 142
            |||||||||||||||||||||
Sbjct: 3808 cctggccttacaaaacaaaag 3828



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>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete
             sequence
          Length = 117898

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    tgcagaaaactagggaagaat 95
             |||||||||||||||||||||
Sbjct: 63406 tgcagaaaactagggaagaat 63426



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>emb|BX005419.6| Zebrafish DNA sequence from clone DKEY-199L1 in linkage group 5, complete
              sequence
          Length = 179504

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 7      actgcatttattggacacaaa 27
              |||||||||||||||||||||
Sbjct: 136150 actgcatttattggacacaaa 136130



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>emb|AL163192.6|HS298E2 Homo sapiens chromosome 9 BAC RP11-298E2, complete sequence
          Length = 140741

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   cctggccttacaaaacaaaag 142
             |||||||||||||||||||||
Sbjct: 54435 cctggccttacaaaacaaaag 54415



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>emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on chromosome 11, complete
              sequence
          Length = 225399

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 21     acacaaacatgtacatacaga 41
              |||||||||||||||||||||
Sbjct: 204535 acacaaacatgtacatacaga 204515



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>gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosome 15, complete
           sequence
          Length = 196777

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  gacacaaacatgtacataca 39
           ||||||||||||||||||||
Sbjct: 835 gacacaaacatgtacataca 854



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>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158496

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acacaaacatgtacatacag 40
             ||||||||||||||||||||
Sbjct: 32975 acacaaacatgtacatacag 32956



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>gb|AC158641.12| Mus musculus 10 BAC RP23-461E22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 186390

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    acacaaacatgtacatacag 40
             ||||||||||||||||||||
Sbjct: 37755 acacaaacatgtacatacag 37774



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>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence
          Length = 168853

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    acacaaacatgtacatacag 40
             ||||||||||||||||||||
Sbjct: 46002 acacaaacatgtacatacag 46021



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>gb|BC088000.1| Xenopus tropicalis suppression of tumorigenicity 7 like, mRNA (cDNA
           clone MGC:107913 IMAGE:7024206), complete cds
          Length = 1960

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  agaatacaacaggtacacat 110
           ||||||||||||||||||||
Sbjct: 469 agaatacaacaggtacacat 488



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>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence
          Length = 223529

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     gacacaaacatgtacataca 39
              ||||||||||||||||||||
Sbjct: 168029 gacacaaacatgtacataca 168048



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>gb|AC122530.3| Mus musculus BAC clone RP24-531C7 from chromosome 7, complete sequence
          Length = 141027

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    gacacaaacatgtacataca 39
             ||||||||||||||||||||
Sbjct: 31803 gacacaaacatgtacataca 31784



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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ggacacaaacatgtacatac 38
             ||||||||||||||||||||
Sbjct: 97253 ggacacaaacatgtacatac 97272



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>emb|AL359263.13| Human DNA sequence from clone RP13-88F20 on chromosome X Contains an
             adaptor-related protein complex 2, beta 1 subunit (AP2B1)
             pseudogene, complete sequence
          Length = 69518

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   catgggaaagcctggccttacaaa 135
             ||||||||||| ||||||||||||
Sbjct: 10688 catgggaaagcatggccttacaaa 10711



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>ref|NM_001011286.1| Xenopus tropicalis suppression of tumorigenicity 7 like (st7l),
           mRNA
          Length = 1960

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  agaatacaacaggtacacat 110
           ||||||||||||||||||||
Sbjct: 469 agaatacaacaggtacacat 488



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 19       ggacacaaacatgtacatac 38
                ||||||||||||||||||||
Sbjct: 21447503 ggacacaaacatgtacatac 21447522



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>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence
          Length = 193738

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gacacaaacatgtacataca 39
             ||||||||||||||||||||
Sbjct: 17652 gacacaaacatgtacataca 17671



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>emb|BX901900.20| Zebrafish DNA sequence from clone CH211-189A21 in linkage group 3,
             complete sequence
          Length = 143917

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    acatacagaaaactagacag 52
             ||||||||||||||||||||
Sbjct: 92563 acatacagaaaactagacag 92582



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>emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chromosome 2, complete
             sequence
          Length = 131825

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aacatgtacatacagaaaac 45
             ||||||||||||||||||||
Sbjct: 42655 aacatgtacatacagaaaac 42636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,243,364
Number of Sequences: 3902068
Number of extensions: 3243364
Number of successful extensions: 47079
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47031
Number of HSP's gapped (non-prelim): 48
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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