Clone Name | rbart41d02 |
---|---|
Clone Library Name | barley_pub |
>gb|AC154305.2| Mus musculus BAC clone RP24-492C11 from chromosome 14, complete sequence Length = 181910 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 acacaaacatgtacatacaga 41 ||||||||||||||||||||| Sbjct: 124079 acacaaacatgtacatacaga 124099
>emb|CR558303.7| Zebrafish DNA sequence from clone CH211-183C15 in linkage group 13, complete sequence Length = 155098 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 actgcatttattggacacaaa 27 ||||||||||||||||||||| Sbjct: 6113 actgcatttattggacacaaa 6093
>dbj|AK172755.1| Homo sapiens cDNA FLJ23916 fis, clone COL00117 Length = 4729 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 cctggccttacaaaacaaaag 142 ||||||||||||||||||||| Sbjct: 3808 cctggccttacaaaacaaaag 3828
>dbj|AK074231.1| Homo sapiens cDNA FLJ23651 fis, clone COL08363 Length = 4729 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 cctggccttacaaaacaaaag 142 ||||||||||||||||||||| Sbjct: 3808 cctggccttacaaaacaaaag 3828
>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete sequence Length = 117898 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 tgcagaaaactagggaagaat 95 ||||||||||||||||||||| Sbjct: 63406 tgcagaaaactagggaagaat 63426
>emb|BX005419.6| Zebrafish DNA sequence from clone DKEY-199L1 in linkage group 5, complete sequence Length = 179504 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 actgcatttattggacacaaa 27 ||||||||||||||||||||| Sbjct: 136150 actgcatttattggacacaaa 136130
>emb|AL163192.6|HS298E2 Homo sapiens chromosome 9 BAC RP11-298E2, complete sequence Length = 140741 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cctggccttacaaaacaaaag 142 ||||||||||||||||||||| Sbjct: 54435 cctggccttacaaaacaaaag 54415
>emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on chromosome 11, complete sequence Length = 225399 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 acacaaacatgtacatacaga 41 ||||||||||||||||||||| Sbjct: 204535 acacaaacatgtacatacaga 204515
>gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosome 15, complete sequence Length = 196777 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gacacaaacatgtacataca 39 |||||||||||||||||||| Sbjct: 835 gacacaaacatgtacataca 854
>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158496 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 acacaaacatgtacatacag 40 |||||||||||||||||||| Sbjct: 32975 acacaaacatgtacatacag 32956
>gb|AC158641.12| Mus musculus 10 BAC RP23-461E22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186390 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 acacaaacatgtacatacag 40 |||||||||||||||||||| Sbjct: 37755 acacaaacatgtacatacag 37774
>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence Length = 168853 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 acacaaacatgtacatacag 40 |||||||||||||||||||| Sbjct: 46002 acacaaacatgtacatacag 46021
>gb|BC088000.1| Xenopus tropicalis suppression of tumorigenicity 7 like, mRNA (cDNA clone MGC:107913 IMAGE:7024206), complete cds Length = 1960 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 agaatacaacaggtacacat 110 |||||||||||||||||||| Sbjct: 469 agaatacaacaggtacacat 488
>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence Length = 223529 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gacacaaacatgtacataca 39 |||||||||||||||||||| Sbjct: 168029 gacacaaacatgtacataca 168048
>gb|AC122530.3| Mus musculus BAC clone RP24-531C7 from chromosome 7, complete sequence Length = 141027 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gacacaaacatgtacataca 39 |||||||||||||||||||| Sbjct: 31803 gacacaaacatgtacataca 31784
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ggacacaaacatgtacatac 38 |||||||||||||||||||| Sbjct: 97253 ggacacaaacatgtacatac 97272
>emb|AL359263.13| Human DNA sequence from clone RP13-88F20 on chromosome X Contains an adaptor-related protein complex 2, beta 1 subunit (AP2B1) pseudogene, complete sequence Length = 69518 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 catgggaaagcctggccttacaaa 135 ||||||||||| |||||||||||| Sbjct: 10688 catgggaaagcatggccttacaaa 10711
>ref|NM_001011286.1| Xenopus tropicalis suppression of tumorigenicity 7 like (st7l), mRNA Length = 1960 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 agaatacaacaggtacacat 110 |||||||||||||||||||| Sbjct: 469 agaatacaacaggtacacat 488
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ggacacaaacatgtacatac 38 |||||||||||||||||||| Sbjct: 21447503 ggacacaaacatgtacatac 21447522
>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence Length = 193738 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gacacaaacatgtacataca 39 |||||||||||||||||||| Sbjct: 17652 gacacaaacatgtacataca 17671
>emb|BX901900.20| Zebrafish DNA sequence from clone CH211-189A21 in linkage group 3, complete sequence Length = 143917 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 acatacagaaaactagacag 52 |||||||||||||||||||| Sbjct: 92563 acatacagaaaactagacag 92582
>emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chromosome 2, complete sequence Length = 131825 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 aacatgtacatacagaaaac 45 |||||||||||||||||||| Sbjct: 42655 aacatgtacatacagaaaac 42636 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,243,364 Number of Sequences: 3902068 Number of extensions: 3243364 Number of successful extensions: 47079 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47031 Number of HSP's gapped (non-prelim): 48 length of query: 238 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 216 effective length of database: 17,147,199,772 effective search space: 3703795150752 effective search space used: 3703795150752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)