ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41d01 |
|---|---|
| Clone Library Name | barley_pub |
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 33.1 bits (74), Expect = 0.49 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 301 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSL 414 LPS L A +H IR R+L L Q+R+E C L Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPL 494
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 33.1 bits (74), Expect = 0.49 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 301 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSL 414 LPS L A +H IR R+L L Q+R+E C L Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPL 494
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 33.1 bits (74), Expect = 0.49 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 301 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSL 414 LPS L A +H IR R+L L Q+R+E C L Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPL 494
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 33.1 bits (74), Expect = 0.49 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 301 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSL 414 LPS L A +H IR R+L L Q+R+E C L Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPL 494
>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3119 Score = 32.3 bits (72), Expect = 0.83 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 90 GPQKCKAKDSQQSSCV*IVLTNMMLSLHSSAWFPKSVKSH 209 G A D + SC + + +M+L+L SSAWFP + +H Sbjct: 1028 GVPPLSASDESRKSCT-VGMASMILTLLSSAWFPLDLSAH 1066
>HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD protein)| Length = 3144 Score = 32.0 bits (71), Expect = 1.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +3 Query: 90 GPQKCKAKDSQQSSCV*IVLTNMMLSLHSSAWFPKSVKSH 209 G A D + SC + + M+L+L SSAWFP + +H Sbjct: 1050 GVPPLSASDESRKSCT-VGMATMILTLLSSAWFPLDLSAH 1088
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 301 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSL 414 LPS L A +H IR ++L L Q+R+E C L Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIAQKLALAQLRQESCPL 494
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A| subunit (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 178 RHGSLNQ*NHTFSHHHLPLEALTDRYKLGDRKSSRSNRRCSLPSRQRHLGNAAPG 342 R L Q H H P +A T+R K GD ++R + +RH PG Sbjct: 832 RESELQQREHAPPREHAPWDADTERAKAGDAPRRHTHRPVAEGEPRRHRARRRPG 886
>TM115_HUMAN (Q12893) Transmembrane protein 115 (Protein PL6) (Placental protein| 6) (PP6) Length = 351 Score = 31.2 bits (69), Expect = 1.9 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -2 Query: 523 TSSLPGSDSTEANRRRERGQRALEQRL 443 T SLPG+D +A RRR+ +AL +RL Sbjct: 269 TISLPGTDPQDAERRRQLALKALNERL 295
>TM115_MOUSE (Q9WUH1) Transmembrane protein 115 (Protein PL6 homolog)| Length = 350 Score = 31.2 bits (69), Expect = 1.9 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -2 Query: 523 TSSLPGSDSTEANRRRERGQRALEQRL 443 T SLPG+D +A RRR+ +AL +RL Sbjct: 269 TISLPGTDPQDAERRRQLALKALNERL 295
>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3148 Score = 29.6 bits (65), Expect = 5.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 153 NMMLSLHSSAWFPKSVKSH 209 NM+LSL SSAWFP + +H Sbjct: 1057 NMVLSLLSSAWFPLDLSAH 1075
>RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (C-RAF) Length = 638 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = +1 Query: 244 TDRYKLGDRKSSRSNRRCSLPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCSLY 417 +D KL D + S R LP++QR + N G+ ++ + LK+ ++ E C+++ Sbjct: 43 SDDGKLSDTSKTSSTMRVYLPNKQRTVVNVRSGM-SLHDCLMKSLKVRGLQPECCAVF 99
>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD protein)| Length = 3110 Score = 29.3 bits (64), Expect = 7.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +3 Query: 90 GPQKCKAKDSQQSSCV*IVLTNMMLSLHSSAWFP 191 G A D + SC + + +M+L+L SSAWFP Sbjct: 1019 GVPPLSASDESRKSCT-VGMASMILTLLSSAWFP 1051
>EXPA_DROME (Q07436) Protein expanded| Length = 1427 Score = 28.9 bits (63), Expect = 9.2 Identities = 27/100 (27%), Positives = 39/100 (39%) Frame = +1 Query: 46 TNRCANSFIDHRTPLGPKNAKRKTLSSHHASKLC*QT*CYHCTVRHGSLNQ*NHTFSHHH 225 T R S + T L P AK + HH S S+ N + H Sbjct: 889 TTRPQISILKAHTSLIPDGAKPSYAAPHHCS----------------SVASSNGSVCSHQ 932 Query: 226 LPLEALTDRYKLGDRKSSRSNRRCSLPSRQRHLGNAAPGI 345 L ++L + G ++S + +PS RH G+AA GI Sbjct: 933 LSQQSLHNSNYAGGSQASLHHHH--VPSHHRHSGSAAIGI 970 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,144,813 Number of Sequences: 219361 Number of extensions: 1427684 Number of successful extensions: 3803 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3704 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3802 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
