ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479386.1| Oryza sativa (japonica cultivar-group), mRNA 157 4e-35
2dbj|AK102349.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 78 3e-11
8gb|AY110192.1| Zea mays CL46553_1 mRNA sequence 62 2e-06
9ref|XM_760893.1| Theileria parva strain Muguga chromosome 1 hypo... 42 1.8
10emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in... 42 1.8
11emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 ... 42 1.8
12emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 42 1.8
13gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 7.2
14gb|AY017995.1| Oryza sativa microsatellite MRG0320 containing (A... 40 7.2
15ref|XM_457562.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 7.2
16ref|XM_988720.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
17ref|XM_988761.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
18ref|XM_973895.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
19ref|XM_355585.5| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
20ref|XM_907871.2| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
21ref|XM_920626.2| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 g... 40 7.2
22gb|AC113969.7| Mus musculus chromosome 8, clone RP23-122L19, com... 40 7.2
23gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 ma... 40 7.2
24gb|BC114239.1| Danio rerio hypothetical protein LOC553384, mRNA ... 40 7.2
25emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 7.2
26emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 ... 40 7.2
27emb|BX927252.5| Zebrafish DNA sequence from clone CH211-212O10 i... 40 7.2
28dbj|AK153360.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 7.2
29gb|BC093303.1| Danio rerio hypothetical protein LOC553384, mRNA ... 40 7.2
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
31dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
32dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
33dbj|AB105770.1| Bovine viral diarrhea virus 1 gene for nonstruct... 40 7.2
34dbj|AP003395.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.2
35emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom... 40 7.2 
>ref|XM_479386.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1585

 Score =  157 bits (79), Expect = 4e-35
 Identities = 154/179 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  accgggaattcacaacattcgcaggtcgttttgtagaaggctcaaactttgtcagatgcg 395
            ||||||||||||||| || | || ||||||   | ||||||||||||||||||||| || 
Sbjct: 1225 accgggaattcacaaaatgcacatgtcgttgcatggaaggctcaaactttgtcagaggca 1166

                                                                        
Query: 396  tcgagagatgtgctctctgtactcttgacggcggccagcttctcagccaatctttgctcc 455
            ||  | ||||||| ||| | ||| ||||| || |||||||||||||| ||||||||||||
Sbjct: 1165 tcctgtgatgtgccctcagaacttttgaccgcagccagcttctcagctaatctttgctcc 1106

                                                                       
Query: 456  agtgccctttgacccctttccctcctcctgtttgcctcagtagaatctgaaccaggcaa 514
            |||||||||||||||||||| || || ||||| |||||| |||||||||||||||||||
Sbjct: 1105 agtgccctttgacccctttctcttcttctgttcgcctcaatagaatctgaaccaggcaa 1047
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>dbj|AK102349.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091C24, full
            insert sequence
          Length = 1586

 Score =  157 bits (79), Expect = 4e-35
 Identities = 154/179 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  accgggaattcacaacattcgcaggtcgttttgtagaaggctcaaactttgtcagatgcg 395
            ||||||||||||||| || | || ||||||   | ||||||||||||||||||||| || 
Sbjct: 1226 accgggaattcacaaaatgcacatgtcgttgcatggaaggctcaaactttgtcagaggca 1167

                                                                        
Query: 396  tcgagagatgtgctctctgtactcttgacggcggccagcttctcagccaatctttgctcc 455
            ||  | ||||||| ||| | ||| ||||| || |||||||||||||| ||||||||||||
Sbjct: 1166 tcctgtgatgtgccctcagaacttttgaccgcagccagcttctcagctaatctttgctcc 1107

                                                                       
Query: 456  agtgccctttgacccctttccctcctcctgtttgcctcagtagaatctgaaccaggcaa 514
            |||||||||||||||||||| || || ||||| |||||| |||||||||||||||||||
Sbjct: 1106 agtgccctttgacccctttctcttcttctgttcgcctcaatagaatctgaaccaggcaa 1048
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 1e-23
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                            
Query: 336      accgggaattcacaacattcgcaggtcgttttgtagaaggctcaaactttgtcagatgcg 395
                ||||||||||||||| || | || ||||||   | ||||||||||||||||||||| || 
Sbjct: 27501246 accgggaattcacaaaatgcacatgtcgttgcatggaaggctcaaactttgtcagaggca 27501187

                                                                            
Query: 396      tcgagagatgtgctctctgtactcttgacggcggccagcttctcagccaatctttgctcc 455
                ||  | ||||||| ||| | ||| ||||| || |||||||||||||| ||||||||||||
Sbjct: 27501186 tcctgtgatgtgccctcagaacttttgaccgcagccagcttctcagctaatctttgctcc 27501127

                                    
Query: 456      agtgccctttgacccctttc 475
                ||||||||||||||||||||
Sbjct: 27501126 agtgccctttgacccctttc 27501107



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 483      ctgtttgcctcagtagaatctgaaccaggcaa 514
                ||||| |||||| |||||||||||||||||||
Sbjct: 27500601 ctgttcgcctcaatagaatctgaaccaggcaa 27500570
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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score =  119 bits (60), Expect = 1e-23
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                         
Query: 336   accgggaattcacaacattcgcaggtcgttttgtagaaggctcaaactttgtcagatgcg 395
             ||||||||||||||| || | || ||||||   | ||||||||||||||||||||| || 
Sbjct: 65217 accgggaattcacaaaatgcacatgtcgttgcatggaaggctcaaactttgtcagaggca 65158

                                                                         
Query: 396   tcgagagatgtgctctctgtactcttgacggcggccagcttctcagccaatctttgctcc 455
             ||  | ||||||| ||| | ||| ||||| || |||||||||||||| ||||||||||||
Sbjct: 65157 tcctgtgatgtgccctcagaacttttgaccgcagccagcttctcagctaatctttgctcc 65098

                                 
Query: 456   agtgccctttgacccctttc 475
             ||||||||||||||||||||
Sbjct: 65097 agtgccctttgacccctttc 65078



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 483   ctgtttgcctcagtagaatctgaaccaggcaa 514
             ||||| |||||| |||||||||||||||||||
Sbjct: 64572 ctgttcgcctcaatagaatctgaaccaggcaa 64541
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 429      gccagcttctcagccaatctttgctccagtgccctttgacccctttc 475
                |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 13722131 gccagcttttcagccaatctttgctcaagtgccctttgacccctttc 13722177
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 429      gccagcttctcagccaatctttgctccagtgccctttgacccctttc 475
                |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 13717106 gccagcttttcagccaatctttgctcaagtgccctttgacccctttc 13717152
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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                             
Query: 429    gccagcttctcagccaatctttgctccagtgccctttgacccctttc 475
              |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 112803 gccagcttttcagccaatctttgctcaagtgccctttgacccctttc 112849
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>gb|AY110192.1| Zea mays CL46553_1 mRNA sequence
          Length = 653

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 81/97 (83%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                       
Query: 369 tagaaggctcaaactttgtcagatgcgtcgagagatgtgct---ctctgtactcttgacg 425
           |||||| |||||||||||||||  || || || |||||||    ||||| |||| |||| 
Sbjct: 349 tagaagactcaaactttgtcagcggcatccagtgatgtgccgccctctgaactcctgact 408

                                                
Query: 426 gcggccagcttctcagccaatctttgctccagtgccc 462
           || |||||||| ||||| |||||||||||||||||||
Sbjct: 409 gcagccagcttttcagctaatctttgctccagtgccc 445
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>ref|XM_760893.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0466) partial mRNA
          Length = 8583

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 401  agatgtgctctctgtactcttgacggcgg 429
            ||||||||||| ||||| |||||||||||
Sbjct: 6488 agatgtgctctgtgtacccttgacggcgg 6460
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>emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4,
             complete sequence
          Length = 210697

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 435   ttctcagccaatctttgctcc 455
             |||||||||||||||||||||
Sbjct: 47825 ttctcagccaatctttgctcc 47805
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>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4,
             complete sequence
          Length = 200352

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 435   ttctcagccaatctttgctcc 455
             |||||||||||||||||||||
Sbjct: 87252 ttctcagccaatctttgctcc 87232
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   ttccctcctcctgtttgcctc 493
             |||||||||||||||||||||
Sbjct: 62857 ttccctcctcctgtttgcctc 62877
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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 474  tccctcctcctgtttgcctc 493
            ||||||||||||||||||||
Sbjct: 7730 tccctcctcctgtttgcctc 7749
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>gb|AY017995.1| Oryza sativa microsatellite MRG0320 containing (AG)X20, genomic
           sequence
          Length = 240

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 88  ctgggccccaaaaatgcaaagcga 111
           ||||||| ||||||||||||||||
Sbjct: 226 ctgggccacaaaaatgcaaagcga 203
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>ref|XM_457562.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B14289g)
           partial mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  ttccagcagatagaaccaaa 34
           ||||||||||||||||||||
Sbjct: 857 ttccagcagatagaaccaaa 876
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>ref|XM_988720.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 2 (3200001K10Rik), mRNA
          Length = 9397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3237 ctccctgccctccagacaac 3218
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>ref|XM_988761.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 3 (3200001K10Rik), mRNA
          Length = 9517

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3357 ctccctgccctccagacaac 3338
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>ref|XM_973895.1| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 4 (3200001K10Rik), mRNA
          Length = 9397

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3237 ctccctgccctccagacaac 3218
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>ref|XM_355585.5| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 1 (3200001K10Rik), mRNA
          Length = 9517

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3357 ctccctgccctccagacaac 3338
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>ref|XM_907871.2| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 4 (3200001K10Rik), mRNA
          Length = 9379

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3219 ctccctgccctccagacaac 3200
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>ref|XM_920626.2| PREDICTED: Mus musculus RIKEN cDNA 3200001K10 gene, transcript
            variant 6 (3200001K10Rik), mRNA
          Length = 9499

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 3339 ctccctgccctccagacaac 3320
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>gb|AC113969.7| Mus musculus chromosome 8, clone RP23-122L19, complete sequence
          Length = 182258

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   tccctcctcctgtttgcctc 493
             ||||||||||||||||||||
Sbjct: 14678 tccctcctcctgtttgcctc 14659
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>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence
          Length = 204267

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gacaacgtcacttgggtaac 330
              ||||||||||||||||||||
Sbjct: 149354 gacaacgtcacttgggtaac 149373
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>gb|BC114239.1| Danio rerio hypothetical protein LOC553384, mRNA (cDNA clone
           IMAGE:7995845), partial cds
          Length = 2186

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 gctccagtgccctttgaccc 470
           ||||||||||||||||||||
Sbjct: 561 gctccagtgccctttgaccc 580
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
               hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      ttccagcagatagaaccaaa 34
               ||||||||||||||||||||
Sbjct: 1116110 ttccagcagatagaaccaaa 1116129
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>emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 in linkage group 5,
              complete sequence
          Length = 189369

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 451    gctccagtgccctttgaccc 470
              ||||||||||||||||||||
Sbjct: 181903 gctccagtgccctttgaccc 181922
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>emb|BX927252.5| Zebrafish DNA sequence from clone CH211-212O10 in linkage group 5,
             complete sequence
          Length = 176261

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   gctccagtgccctttgaccc 470
             ||||||||||||||||||||
Sbjct: 46703 gctccagtgccctttgaccc 46684
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>dbj|AK153360.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830149A09 product:Hypothetical
            RNA-binding region RNP-1 (Fragment), full insert sequence
          Length = 2214

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  ctccctgccctccagacaac 316
            ||||||||||||||||||||
Sbjct: 1441 ctccctgccctccagacaac 1422
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>gb|BC093303.1| Danio rerio hypothetical protein LOC553384, mRNA (cDNA clone
           IMAGE:7403464), partial cds
          Length = 2156

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 gctccagtgccctttgaccc 470
           ||||||||||||||||||||
Sbjct: 544 gctccagtgccctttgaccc 563
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 468      cccctttccctcctcctgtt 487
                ||||||||||||||||||||
Sbjct: 33743339 cccctttccctcctcctgtt 33743358



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 88      ctgggccccaaaaatgcaaagcga 111
               ||||||| ||||||||||||||||
Sbjct: 2176890 ctgggccacaaaaatgcaaagcga 2176867
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    ctgggccccaaaaatgcaaagcga 111
             ||||||| ||||||||||||||||
Sbjct: 98002 ctgggccacaaaaatgcaaagcga 97979
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>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699H05
          Length = 144850

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   cccctttccctcctcctgtt 487
             ||||||||||||||||||||
Sbjct: 96409 cccctttccctcctcctgtt 96428
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>dbj|AB105770.1| Bovine viral diarrhea virus 1 gene for nonstructural protein NS5B,
           partial cds, 3' UTR, isolate: IS17 NCP/99
          Length = 288

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 acagatagatataaactagg 263
           ||||||||||||||||||||
Sbjct: 62  acagatagatataaactagg 81
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>dbj|AP003395.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-305N23, complete
              sequences
          Length = 205596

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 447    ctttgctccagtgccctttgacccctttccct 478
              ||||||||||||||||| || | |||||||||
Sbjct: 103707 ctttgctccagtgccctctgtctcctttccct 103676
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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
            sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  ccctttccctcctcctgttt 488
            ||||||||||||||||||||
Sbjct: 4130 ccctttccctcctcctgttt 4149


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,407,574
Number of Sequences: 3902068
Number of extensions: 4407574
Number of successful extensions: 78040
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77871
Number of HSP's gapped (non-prelim): 165
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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