ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 46 0.098
2ref|XM_567910.1| Cryptococcus neoformans var. neoformans JEC21 t... 46 0.098
3gb|AY874945.1| Plethodon metcalfi haplotype metcalfi-44 NADH deh... 44 0.39
4gb|AY874944.1| Plethodon metcalfi haplotype metcalfi-43 NADH deh... 44 0.39
5gb|AY874943.1| Plethodon metcalfi haplotype metcalfi-42 NADH deh... 44 0.39
6gb|AY874942.1| Plethodon metcalfi haplotype metcalfi-41 NADH deh... 44 0.39
7gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 42 1.5
8emb|X80997.1|CCGLMSEL C.cochlearium glmS, glmE and glmL genes 42 1.5
9gb|AC160640.2| Gallus gallus BAC clone CH261-166L21 from chromos... 42 1.5
10gb|AE010346.1| Methanopyrus kandleri AV19 section 45 of 157 of t... 40 6.1
11gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 40 6.1
12gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 40 6.1
13gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 40 6.1
14gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 40 6.1
15gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 40 6.1
16gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene,... 40 6.1
17gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.1
18ref|NM_018779.1| Mus musculus phosphodiesterase 3A, cGMP inhibit... 40 6.1
19ref|XM_813502.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.1
20ref|XM_755192.1| Ustilago maydis 521 hypothetical protein (UM041... 40 6.1
21gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, comple... 40 6.1
22gb|AC142327.1| Pan troglodytes BAC clone RP43-22L22 from 7, comp... 40 6.1
23gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.1
24gb|AF099187.1| Mus musculus cGMP-inhibited phosphodiesterase (PD... 40 6.1
25gb|M22629.1|MTBXXDH Methylobacterium organophilum methanol dehyd... 40 6.1
26gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 6.1
27gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosom... 40 6.1
28gb|AF348165.2|AF348165 Pseudomonas xiamenensis putative transcri... 40 6.1
29gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, c... 40 6.1
30dbj|AK089148.1| Mus musculus 10 days neonate olfactory brain cDN... 40 6.1
31emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in... 40 6.1
32emb|AL116050.1|CNS01CVU Botrytis cinerea strain T4 cDNA library 40 6.1
33emb|AL116263.1|CNS01D1R Botrytis cinerea strain T4 cDNA library 40 6.1
34emb|AL113800.1|CNS01B5C Botrytis cinerea strain T4 cDNA library 40 6.1
35emb|AL113310.1|CNS01ARQ Botrytis cinerea strain T4 cDNA library 40 6.1
36emb|AL112859.1|CNS01AF7 Botrytis cinerea strain T4 cDNA library 40 6.1
37emb|AL111925.1|CNS019P9 Botrytis cinerea strain T4 cDNA library 40 6.1
38emb|AL110860.1|CNS018VP Botrytis cinerea strain T4 cDNA library 40 6.1
39gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer... 40 6.1
40gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cance... 40 6.1
41gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 6.1
42gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7,... 40 6.1
43gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 40 6.1
44dbj|AB042110.1| Pyrus pyrifolia PPETR2 mRNA for ethylene recepto... 40 6.1
45gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 6.1
46gb|L29053.1|VIBTOXRH Vibrio fischeri transmembrane transcription... 40 6.1 
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 206    gccgtccttgtcgaacccggcgataccctcgtggagcttgtca 248
              |||||||||| |||| ||   ||||||||||||||||||||||
Sbjct: 940103 gccgtccttggcgaaacctcggataccctcgtggagcttgtca 940145
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>ref|XM_567910.1| Cryptococcus neoformans var. neoformans JEC21 transaldolase
           (CNK03170) partial mRNA
          Length = 1093

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 206 gccgtccttgtcgaacccggcgataccctcgtggagcttgtca 248
           |||||||||| |||| ||   ||||||||||||||||||||||
Sbjct: 979 gccgtccttggcgaaacctcggataccctcgtggagcttgtca 937
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>gb|AY874945.1| Plethodon metcalfi haplotype metcalfi-44 NADH dehydrogenase subunit
           II (ND2) gene, complete cds; and tRNA-Trp and tRNA-Ala
           genes, complete sequence; mitochondrial
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 gagcttaggggcgatggtgaggtagt 417
           ||||||||||| ||||||||||||||
Sbjct: 932 gagcttaggggggatggtgaggtagt 907
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>gb|AY874944.1| Plethodon metcalfi haplotype metcalfi-43 NADH dehydrogenase subunit
           II (ND2) gene, complete cds; and tRNA-Trp and tRNA-Ala
           genes, complete sequence; mitochondrial
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 gagcttaggggcgatggtgaggtagt 417
           ||||||||||| ||||||||||||||
Sbjct: 932 gagcttaggggggatggtgaggtagt 907
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>gb|AY874943.1| Plethodon metcalfi haplotype metcalfi-42 NADH dehydrogenase subunit
           II (ND2) gene, complete cds; and tRNA-Trp and tRNA-Ala
           genes, complete sequence; mitochondrial
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 gagcttaggggcgatggtgaggtagt 417
           ||||||||||| ||||||||||||||
Sbjct: 932 gagcttaggggggatggtgaggtagt 907
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>gb|AY874942.1| Plethodon metcalfi haplotype metcalfi-41 NADH dehydrogenase subunit
           II (ND2) gene, complete cds; and tRNA-Trp and tRNA-Ala
           genes, complete sequence; mitochondrial
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 gagcttaggggcgatggtgaggtagt 417
           ||||||||||| ||||||||||||||
Sbjct: 932 gagcttaggggggatggtgaggtagt 907
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atttttatattttcagattac 33
             |||||||||||||||||||||
Sbjct: 71056 atttttatattttcagattac 71036



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 64227 tttttatattttcagattac 64208
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>emb|X80997.1|CCGLMSEL C.cochlearium glmS, glmE and glmL genes
          Length = 3646

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 10   accatttttatattttcagat 30
            |||||||||||||||||||||
Sbjct: 1627 accatttttatattttcagat 1607
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>gb|AC160640.2| Gallus gallus BAC clone CH261-166L21 from chromosome unknown, complete
              sequence
          Length = 233376

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    gttggactcgatgagctcttg 388
              |||||||||||||||||||||
Sbjct: 128259 gttggactcgatgagctcttg 128239
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>gb|AE010346.1| Methanopyrus kandleri AV19 section 45 of 157 of the complete genome
          Length = 9150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  tgaggtcgtccaaggacttc 287
            ||||||||||||||||||||
Sbjct: 4023 tgaggtcgtccaaggacttc 4042
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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 65480 tttttatattttcagattac 65499
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>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 116772 tttttatattttcagattac 116753
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>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 17990 tttttatattttcagattac 18009
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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 145377 tttttatattttcagattac 145396
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>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 22603 tttttatattttcagattac 22584
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>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed
              globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty)
              gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin
              (HMW) gene, HMW-Dtx2 allele, complete cds
          Length = 102842

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 100187 tttttatattttcagattac 100206
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 189     aaatccttgagggtcttgccgtcc 212
               ||||||||||||| ||||||||||
Sbjct: 2615261 aaatccttgaggggcttgccgtcc 2615238
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>ref|NM_018779.1| Mus musculus phosphodiesterase 3A, cGMP inhibited (Pde3a), mRNA
          Length = 4205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  aagagtcaggaggcggcggc 61
           ||||||||||||||||||||
Sbjct: 589 aagagtcaggaggcggcggc 608
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>ref|XM_813502.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507681.80) partial mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gcttgtcataagccatcttg 260
            ||||||||||||||||||||
Sbjct: 1303 gcttgtcataagccatcttg 1284
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>ref|XM_755192.1| Ustilago maydis 521 hypothetical protein (UM04138.1) partial mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 210 tccttgtcgaacccggcgataccctcgtggagcttg 245
           |||||| |||| |||||||||||||||  |||||||
Sbjct: 929 tccttggcgaaaccggcgataccctcggcgagcttg 894
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>gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, complete sequence
          Length = 175645

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 165877 tttttatattttcagattac 165858
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>gb|AC142327.1| Pan troglodytes BAC clone RP43-22L22 from 7, complete sequence
          Length = 176446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   tttttatattttcagattac 33
            ||||||||||||||||||||
Sbjct: 9720 tttttatattttcagattac 9739
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    atccttgagggtcttgccgt 210
              ||||||||||||||||||||
Sbjct: 985249 atccttgagggtcttgccgt 985230
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>gb|AF099187.1| Mus musculus cGMP-inhibited phosphodiesterase (PDE3A) mRNA,
           complete cds
          Length = 4205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  aagagtcaggaggcggcggc 61
           ||||||||||||||||||||
Sbjct: 589 aagagtcaggaggcggcggc 608
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>gb|M22629.1|MTBXXDH Methylobacterium organophilum methanol dehydrogenase (MDH) gene,
            complete cds; and unknown gene
          Length = 2466

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  cttgagggtcttgccgtccttgtc 217
            |||| |||||||||||||||||||
Sbjct: 1548 cttgcgggtcttgccgtccttgtc 1525
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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 15389 tttttatattttcagattac 15370
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>gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosome 14, complete
             sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tttatattttcagattacgt 35
             ||||||||||||||||||||
Sbjct: 40786 tttatattttcagattacgt 40805
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>gb|AF348165.2|AF348165 Pseudomonas xiamenensis putative transcription regulator pTR, NADH
           dehydrogenase, and phosphoglycolate phosphatase genes,
           complete cds
          Length = 4177

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 189 aaatccttgagggtcttgccgtcc 212
           ||||||||||||| ||||||||||
Sbjct: 948 aaatccttgaggggcttgccgtcc 971
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>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tttttatattttcagattac 33
             ||||||||||||||||||||
Sbjct: 94043 tttttatattttcagattac 94062
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>dbj|AK089148.1| Mus musculus 10 days neonate olfactory brain cDNA, RIKEN
           full-length enriched library, clone:E530016L24
           product:phosphodiesterase 3A, cGMP inhibited, full
           insert sequence
          Length = 1592

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  aagagtcaggaggcggcggc 61
           ||||||||||||||||||||
Sbjct: 155 aagagtcaggaggcggcggc 136
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>emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in linkage group 23,
             complete sequence
          Length = 182686

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     aaccatttttatattttcagatta 32
             ||||||||||||||||| ||||||
Sbjct: 92573 aaccatttttatatttttagatta 92596
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>emb|AL116050.1|CNS01CVU Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 368 gatggtgaggtaatcacatccggc 345
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>emb|AL116263.1|CNS01D1R Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 406 gatggtgaggtaatcacatccggc 383
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>emb|AL113800.1|CNS01B5C Botrytis cinerea strain T4 cDNA library
          Length = 696

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 417 gatggtgaggtaatcacatccggc 394
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>emb|AL113310.1|CNS01ARQ Botrytis cinerea strain T4 cDNA library
          Length = 660

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 349 gatggtgaggtaatcacatccggc 326
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>emb|AL112859.1|CNS01AF7 Botrytis cinerea strain T4 cDNA library
          Length = 756

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 536 gatggtgaggtaatcacatccggc 513
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>emb|AL111925.1|CNS019P9 Botrytis cinerea strain T4 cDNA library
          Length = 540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 195 gatggtgaggtaatcacatccggc 172
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>emb|AL110860.1|CNS018VP Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 404 gatggtgaggtagtcacatccggc 427
           |||||||||||| |||||||||||
Sbjct: 362 gatggtgaggtaatcacatccggc 339
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>gb|AC153849.8| Mus musculus  BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205220

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     aagagtcaggaggcggcggc 61
              ||||||||||||||||||||
Sbjct: 194351 aagagtcaggaggcggcggc 194370
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>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aagagtcaggaggcggcggc 61
             ||||||||||||||||||||
Sbjct: 24282 aagagtcaggaggcggcggc 24301
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 191    atccttgagggtcttgccgtccttgtcg 218
              |||||||  |||||||||||||||||||
Sbjct: 173343 atccttgtaggtcttgccgtccttgtcg 173316
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>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 101157 tttttatattttcagattac 101138
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tttttatattttcagattac 33
              ||||||||||||||||||||
Sbjct: 144071 tttttatattttcagattac 144052
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>dbj|AB042110.1| Pyrus pyrifolia PPETR2 mRNA for ethylene receptor, complete cds
          Length = 2720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  ttgagcaaatccttgagggt 202
            ||||||||||||||||||||
Sbjct: 1866 ttgagcaaatccttgagggt 1847
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    caaagccttgatctctccaa 447
              ||||||||||||||||||||
Sbjct: 865636 caaagccttgatctctccaa 865655
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>gb|L29053.1|VIBTOXRH Vibrio fischeri transmembrane transcriptional activator (toxR) and
            toxS genes, complete cds and htpG gene, partial cds
          Length = 2822

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 428  caaagccttgatctctccaa 447
            ||||||||||||||||||||
Sbjct: 1613 caaagccttgatctctccaa 1594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,817,901
Number of Sequences: 3902068
Number of extensions: 3817901
Number of successful extensions: 90043
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89868
Number of HSP's gapped (non-prelim): 175
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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