Clone Name | rbart41c10 |
---|---|
Clone Library Name | barley_pub |
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 33.1 bits (74), Expect = 0.36 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +1 Query: 202 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLS-ALPTLITTTWSSAGTFHA 378 + S S A TCC AAA+AA L GT A +LL+ P ++ S A A Sbjct: 308 SASAASTPSGAPTCCASAAAAAALLYGTG-----GAEDLLAPGAPCAACSSASCANNAFA 362 Query: 379 SFPSLASLAT 408 P L+SL T Sbjct: 363 FGPELSSLIT 372
>MIB1_BRARE (Q804S5) Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb| protein) Length = 1030 Score = 32.0 bits (71), Expect = 0.81 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Frame = +1 Query: 79 TEQRHCIPCMRESTAPHTLQKGCIHIKACTTHA*AMHGCI*TTSTERAKSTAITCCPGA- 255 T+ C+ C + A L + C H+ AC A M C+ + ++ + CC G Sbjct: 859 TKIEECVVCSDKKAA--VLFQPCGHMCACENCASLMKKCVQCRAVVERRTPFVLCCGGKG 916 Query: 256 ---AASAAHLLGTSATGRTSAHELLSALPTLITTTWSS 360 A L G S + + +LL P + +WSS Sbjct: 917 MEDATDDEDLTGGSNSMAGGSQDLLQ--PNNLALSWSS 952
>YAJR_ECOLI (P77726) Inner membrane transport protein yajR| Length = 454 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 373 HASFPSLASLATTGVAFMSNM*RTIWIIPN 462 HA F +A LATTG+A TIW++PN Sbjct: 165 HALFWMIAILATTGIAL------TIWVVPN 188
>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)| (Tracheobronchial mucin) (TBM) (Major airway glycoprotein) (Fragment) Length = 1233 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +1 Query: 202 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHE----LLSALPTLITTTWSSAGT 369 TTST A +T+ T PG S T++ TS S +PT TT S T Sbjct: 129 TTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTPVSKTST 188 Query: 370 FHAS 381 H S Sbjct: 189 SHLS 192
>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)| Length = 881 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/76 (30%), Positives = 36/76 (47%) Frame = +1 Query: 202 TTSTERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLSALPTLITTTWSSAGTFHAS 381 TT+ E + +T IT A + L T+A T A ++ PTL T S++ T +A Sbjct: 542 TTTLENSSTTTIT----AITKSTTTLATTANNSTRAATAVTIDPTLDPTDNSASPTDNAK 597 Query: 382 FPSLASLATTGVAFMS 429 S ++TG + S Sbjct: 598 HTSTYGSSSTGASLDS 613
>MIB1_MOUSE (Q80SY4) Ubiquitin ligase protein MIB1 (EC 6.3.2.-) (Mind bomb| homolog 1) (DAPK-interacting protein 1) (DIP-1) Length = 1006 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +1 Query: 79 TEQRHCIPCMRESTAPHTLQKGCIHIKACTTHA*AMHGCI*TTSTERAKSTAITCCPGAA 258 T+ C+ C + A L + C H+ AC A M C+ + + ITCC G + Sbjct: 861 TKIEECVVCSDKKAA--VLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGGKS 918 Query: 259 A 261 + Sbjct: 919 S 919
>HIRA_DROME (O17468) HIRA protein homolog (dHIRA)| Length = 1047 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = +1 Query: 211 TERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLSALPTLITTTWSSAGTFHASFPS 390 TE+ +TA+ A + A GTS T T+A LS+ + +T+ S + + +S S Sbjct: 911 TEKDGATAVAAAVVAGSRMAVTTGTSTTTTTTASSSLSSSGSSSSTSGSGSSSSSSSTSS 970 Query: 391 LA 396 L+ Sbjct: 971 LS 972
>KPYK2_YEAST (P52489) Pyruvate kinase 2 (EC 2.7.1.40) (PK 2)| Length = 506 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 21 ARLLSTRYCLCLILSTR*YNRTKALHTLHAGIYSTAYPPKRL 146 ARLLS C I+ + RT + L+ G++ Y PKRL Sbjct: 410 ARLLSKYRPSCPIILVTRHARTARIAHLYRGVFPFLYEPKRL 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,942,048 Number of Sequences: 219361 Number of extensions: 972051 Number of successful extensions: 3333 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3323 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)