ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479034.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
3dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
4ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.030
5ref|XM_479039.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.030
6dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.030
7dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.030
8ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.12
9ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
10dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
11dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
12dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
13ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
14ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.48
15ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.48
16dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
17dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
18dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
19gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosom... 42 1.9
20ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antige... 42 1.9
21gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 1.9
22ref|XM_001001069.1| PREDICTED: Mus musculus similar to TD and PO... 42 1.9
23gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome... 42 1.9
24gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome... 42 1.9
25gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 42 1.9
26emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chro... 42 1.9
27gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome... 42 1.9
28gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 42 1.9
29emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 42 1.9
30gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Can... 42 1.9
31gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosom... 42 1.9
32gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mR... 40 7.4
33gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 7.4
34gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
35ref|XM_949319.1| Theileria annulata strain Ankara serine proteas... 40 7.4
36gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, comp... 40 7.4
37emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chr... 40 7.4
38gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
39gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, com... 40 7.4
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
41dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.4
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
43gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, com... 40 7.4 
>ref|XM_479034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 776

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 236 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 286
           ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 466
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 236      tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 286
                ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 24424060 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 24424110



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 233      cgatcatggcttggcctctggctc 256
                ||||||||||||||||||||||||
Sbjct: 24434446 cgatcatggcttggcctctggctc 24434469



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 488      ctttggcacctccggcatgacggggtgtggt 518
                |||||||| |||||||| |||||||||||||
Sbjct: 24416952 ctttggcaactccggcacgacggggtgtggt 24416982



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 488      ctttggcacctccggcatgacggggtgtgg 517
                |||||||| |||||||| ||||||||||||
Sbjct: 24419637 ctttggcaactccggcacgacggggtgtgg 24419666



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 488      ctttggcacctccggcatgacggggtgtgg 517
                |||||||| |||||||| ||||||||||||
Sbjct: 24419415 ctttggcagctccggcacgacggggtgtgg 24419444



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                            
Query: 447      ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
                ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 24417118 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 24417174

                        
Query: 507      acggggtg 514
                ||||||||
Sbjct: 24417175 acggggtg 24417182
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>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 236   tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 286
             ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 49927 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 49977



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 233   cgatcatggcttggcctctggctc 256
             ||||||||||||||||||||||||
Sbjct: 60313 cgatcatggcttggcctctggctc 60336



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 488   ctttggcacctccggcatgacggggtgtggt 518
             |||||||| |||||||| |||||||||||||
Sbjct: 42819 ctttggcaactccggcacgacggggtgtggt 42849



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 488   ctttggcacctccggcatgacggggtgtgg 517
             |||||||| |||||||| ||||||||||||
Sbjct: 45504 ctttggcaactccggcacgacggggtgtgg 45533



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 488   ctttggcacctccggcatgacggggtgtgg 517
             |||||||| |||||||| ||||||||||||
Sbjct: 45282 ctttggcagctccggcacgacggggtgtgg 45311



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Plus

                                                                         
Query: 447   ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
             ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 42985 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 43041

                     
Query: 507   acggggtg 514
             ||||||||
Sbjct: 43042 acggggtg 43049
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>ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.120
           mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 233 cgatcatggcttggcctctggctc 256
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>ref|XM_479039.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 233 cgatcatggcttggcctctggctc 256
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C08, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 233 cgatcatggcttggcctctggctc 256
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H05, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 233 cgatcatggcttggcctctggctc 256
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112
           mRNA
          Length = 1006

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 488 ctttggcacctccggcatgacggggtgtggt 518
           |||||||| |||||||| |||||||||||||
Sbjct: 584 ctttggcaactccggcacgacggggtgtggt 554



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                       
Query: 447 ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
           ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 418 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 362

                   
Query: 507 acggggtg 514
           ||||||||
Sbjct: 361 acggggtg 354
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>ref|XM_479031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1005

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 488 ctttggcacctccggcatgacggggtgtggt 518
           |||||||| |||||||| |||||||||||||
Sbjct: 581 ctttggcaactccggcacgacggggtgtggt 551



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                       
Query: 447 ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
           ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 415 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 359

                   
Query: 507 acggggtg 514
           ||||||||
Sbjct: 358 acggggtg 351
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>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full
           insert sequence
          Length = 1005

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 488 ctttggcacctccggcatgacggggtgtggt 518
           |||||||| |||||||| |||||||||||||
Sbjct: 581 ctttggcaactccggcacgacggggtgtggt 551



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                       
Query: 447 ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
           ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 415 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 359

                   
Query: 507 acggggtg 514
           ||||||||
Sbjct: 358 acggggtg 351
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>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full
           insert sequence
          Length = 1006

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 488 ctttggcacctccggcatgacggggtgtggt 518
           |||||||| |||||||| |||||||||||||
Sbjct: 584 ctttggcaactccggcacgacggggtgtggt 554



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 57/68 (83%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                       
Query: 447 ttcggcaactctggtatggcagggtgcggcagctcgtgctcctttggcacctccggcatg 506
           ||||||||||| || | ||||||||| |||| |||| |   |||||||| |||||||| |
Sbjct: 418 ttcggcaactccggcacggcagggtgaggcacctcggg---ctttggcagctccggcacg 362

                   
Query: 507 acggggtg 514
           ||||||||
Sbjct: 361 acggggtg 354
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>dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040D08, full
           insert sequence
          Length = 776

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 236 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 286
           ||||||||||||||| ||||| || || |||||| | |||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactctggcttcggcggcaa 466
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>ref|XM_479032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 994

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 586 ctttggcagctccggcacgacggggtgtgg 557



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 364 ctttggcaactccggcacgacggggtgtgg 335
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>ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113
           mRNA
          Length = 1071

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 585 ctttggcagctccggcacgacggggtgtgg 556



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 363 ctttggcaactccggcacgacggggtgtgg 334
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>ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113
           mRNA
          Length = 1071

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 585 ctttggcagctccggcacgacggggtgtgg 556



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 363 ctttggcaactccggcacgacggggtgtgg 334
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>dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full
           insert sequence
          Length = 1071

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 585 ctttggcagctccggcacgacggggtgtgg 556



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 363 ctttggcaactccggcacgacggggtgtgg 334
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>dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full
           insert sequence
          Length = 1071

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 585 ctttggcagctccggcacgacggggtgtgg 556



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 363 ctttggcaactccggcacgacggggtgtgg 334
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>dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L14, full
           insert sequence
          Length = 988

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 581 ctttggcagctccggcacgacggggtgtgg 552



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 488 ctttggcacctccggcatgacggggtgtgg 517
           |||||||| |||||||| ||||||||||||
Sbjct: 364 ctttggcaactccggcacgacggggtgtgg 335
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>gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosome 3, complete
            sequence
          Length = 198738

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 511  ggtgtggtagttcatgctcct 531
            |||||||||||||||||||||
Sbjct: 9168 ggtgtggtagttcatgctcct 9148
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>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399),
            partial mRNA
          Length = 3164

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 73   acagattgagcagctgcacca 93
            |||||||||||||||||||||
Sbjct: 1719 acagattgagcagctgcacca 1739
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 67      aaaggaacagattgagcagct 87
               |||||||||||||||||||||
Sbjct: 4032147 aaaggaacagattgagcagct 4032127
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>ref|XM_001001069.1| PREDICTED: Mus musculus similar to TD and POZ domain containing 5
            (LOC668353), mRNA
          Length = 2247

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 511  ggtgtggtagttcatgctcct 531
            |||||||||||||||||||||
Sbjct: 1831 ggtgtggtagttcatgctcct 1851
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>gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome 3, complete sequence
          Length = 164762

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 511    ggtgtggtagttcatgctcct 531
              |||||||||||||||||||||
Sbjct: 163636 ggtgtggtagttcatgctcct 163616
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>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence
          Length = 175133

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 511   ggtgtggtagttcatgctcct 531
             |||||||||||||||||||||
Sbjct: 71343 ggtgtggtagttcatgctcct 71363
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>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     catgaatatacataaaaggaa 73
              |||||||||||||||||||||
Sbjct: 128297 catgaatatacataaaaggaa 128277
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>emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chromosome 13 Contains the
             5' end of a novel gene (KIAA0916) and two CpG islands,
             complete sequence
          Length = 154682

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   atgggtttgataatacttaga 203
             |||||||||||||||||||||
Sbjct: 83884 atgggtttgataatacttaga 83864
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>gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence
          Length = 200016

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 41     atgcatatacatcatgaatat 61
              |||||||||||||||||||||
Sbjct: 104456 atgcatatacatcatgaatat 104436
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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 507    acggggtgtggtagttcatgc 527
              |||||||||||||||||||||
Sbjct: 472285 acggggtgtggtagttcatgc 472305
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>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
              sequence
          Length = 201738

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 59     tatacataaaaggaacagattgagc 83
              |||| ||||||||||||||||||||
Sbjct: 103112 tatatataaaaggaacagattgagc 103136
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>gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170723

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     atatcatgcatatacatcatg 56
              |||||||||||||||||||||
Sbjct: 135297 atatcatgcatatacatcatg 135277
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>gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence
          Length = 196971

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   ggtgtggtagttcatgctcct 531
             |||||||||||||||||||||
Sbjct: 60124 ggtgtggtagttcatgctcct 60104
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>gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mRNA, complete cds
          Length = 4494

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 367  tcggcacctctggcacctcg 386
            ||||||||||||||||||||
Sbjct: 1124 tcggcacctctggcacctcg 1143
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 484     gctcctttggcacctccggcatga 507
               |||||||| |||||||||||||||
Sbjct: 2282824 gctccttttgcacctccggcatga 2282847
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>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15,
              complete sequence
          Length = 126156

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 394    gcacatggggctcctttggcacct 417
              ||||||||| ||||||||||||||
Sbjct: 103433 gcacatgggcctcctttggcacct 103456
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>ref|XM_949319.1| Theileria annulata strain Ankara serine protease (TA21265) partial
           mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 429 tggtgtggcatttcaggctt 448
           ||||||||||||||||||||
Sbjct: 834 tggtgtggcatttcaggctt 853
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>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tgcatatcatgcatatacat 52
             ||||||||||||||||||||
Sbjct: 13943 tgcatatcatgcatatacat 13924
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>emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chromosome 1 Contains the
             3' end of the NPHP4 gene for nephronophthisis 4, complete
             sequence
          Length = 72610

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgtgcatatcatgcatata 49
             ||||||||||||||||||||
Sbjct: 57118 atgtgcatatcatgcatata 57099
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   gcacatggggctcctttggcacct 417
             ||||||||| ||||||||||||||
Sbjct: 37277 gcacatgggcctcctttggcacct 37300
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>gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, complete sequence
          Length = 149059

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   ctcctttggcacctctggca 423
             ||||||||||||||||||||
Sbjct: 98369 ctcctttggcacctctggca 98388
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 394     gcacatggggctcctttggcacct 417
               ||||||||| ||||||||||||||
Sbjct: 6253999 gcacatgggcctcctttggcacct 6254022
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>dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21I16
          Length = 30578

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 10  aaacagaaacatacttattcatgt 33
           |||||||||||||||| |||||||
Sbjct: 701 aaacagaaacatactttttcatgt 724
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 394     gcacatggggctcctttggcacct 417
               ||||||||| ||||||||||||||
Sbjct: 6320466 gcacatgggcctcctttggcacct 6320489
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>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence
          Length = 215819

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    atgaatatacataaaaggaa 73
             ||||||||||||||||||||
Sbjct: 63341 atgaatatacataaaaggaa 63322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,895,891
Number of Sequences: 3902068
Number of extensions: 3895891
Number of successful extensions: 76098
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75837
Number of HSP's gapped (non-prelim): 261
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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