ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative... 74 5e-10
2ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
3gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 74 5e-10
4gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 74 5e-10
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
7dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
8dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene ... 74 5e-10
9dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 74 5e-10
11ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
12gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
13dbj|AB028848.1| Tenebrio molitor mRNA for dopa decarboxylase, co... 44 0.44
14gb|AC103355.9| Mus musculus chromosome 14, clone RP24-482C10, co... 42 1.7
15emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D... 42 1.7
16dbj|AK144259.1| Mus musculus 16 days neonate male diencephalon c... 42 1.7
17dbj|AK012876.1| Mus musculus 10, 11 days embryo whole body cDNA,... 42 1.7
18gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, co... 42 1.7
19gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, com... 42 1.7
20gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome ... 42 1.7
21gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 6.9
22ref|NM_003708.2| Homo sapiens retinol dehydrogenase 16 (all-tran... 40 6.9
23gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.9
24gb|AC129315.3| Mus musculus BAC clone RP23-407E2 from chromosome... 40 6.9
25gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Can... 40 6.9
26emb|BX927166.14| Zebrafish DNA sequence from clone DKEY-28M24 in... 40 6.9
27gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, com... 40 6.9
28gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, comp... 40 6.9
29gb|AC011139.8| Homo sapiens chromosome 18, clone RP11-1I2, compl... 40 6.9
30gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.9
31gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, compl... 40 6.9
32gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.9
33gb|AC020969.2|AC020969 Mus musculus chromosome 18 clone RP23-19K... 40 6.9
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.9
35gb|AF086735.1|AF086735 Homo sapiens retinol dehydrogenase mRNA, ... 40 6.9
36gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 6.9
37emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chr... 40 6.9
38emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chro... 40 6.9 
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA
            decarboxylase 2 (OSJNBa0032N04.8), mRNA
          Length = 1581

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 426  gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
            ||||||||| |||||||||  |||   ||||||||||||||||||| |||||||||| ||
Sbjct: 1347 gaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcgtcggccctgac 1288

                         
Query: 486  catgtcctcgaac 498
            |||| ||||||||
Sbjct: 1287 catgccctcgaac 1275



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  gtgagggtgctccccaccgcacaccttagcatgaacatgccacctacgtttgcagagctc 324
            ||||| ||||| || || || ||||| |||||| ||| ||| || || || || ||||||
Sbjct: 1496 gtgagcgtgctgccgacggcgcacctgagcatgtacacgccgccgacattggcggagctc 1437

                                                     
Query: 325  atgtaggggcctgaggtgacggcgttcacctgctcgaggag 365
            ||||| || || ||| || | |||||||||| |||||||||
Sbjct: 1436 atgtacggtcccgagctggccgcgttcacctcctcgaggag 1396
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>ref|NM_191411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
            ||||||||| |||||||||  |||   || |||||||||||||||| ||||| |||||||
Sbjct: 1344 gaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacctcgcgtcgcccctcac 1285

                                     
Query: 486  catgtcctcgaactccacggccatg 510
            |||| |||||||| || ||||||||
Sbjct: 1284 catggcctcgaacgccgcggccatg 1260
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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                         
Query: 426   gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
             ||||||||| |||||||||  |||   ||||||||||||||||||| |||||||||| ||
Sbjct: 62368 gaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcgtcggccctgac 62427

                          
Query: 486   catgtcctcgaac 498
             |||| ||||||||
Sbjct: 62428 catgccctcgaac 62440



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                         
Query: 265   gtgagggtgctccccaccgcacaccttagcatgaacatgccacctacgtttgcagagctc 324
             ||||| ||||| || || || ||||| |||||| ||| ||| || || || || ||||||
Sbjct: 62219 gtgagcgtgctgccgacggcgcacctgagcatgtacacgccgccgacattggcggagctc 62278

                                                      
Query: 325   atgtaggggcctgaggtgacggcgttcacctgctcgaggag 365
             ||||| || || ||| || | |||||||||| |||||||||
Sbjct: 62279 atgtacggtcccgagctggccgcgttcacctcctcgaggag 62319
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>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                          
Query: 426    gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
              ||||||||| |||||||||  |||   ||||||||||||||||||| |||||||||| ||
Sbjct: 170012 gaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcgtcggccctgac 169953

                           
Query: 486    catgtcctcgaac 498
              |||| ||||||||
Sbjct: 169952 catgccctcgaac 169940



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                          
Query: 265    gtgagggtgctccccaccgcacaccttagcatgaacatgccacctacgtttgcagagctc 324
              ||||| ||||| || || || ||||| |||||| ||| ||| || || || || ||||||
Sbjct: 170161 gtgagcgtgctgccgacggcgcacctgagcatgtacacgccgccgacattggcggagctc 170102

                                                       
Query: 325    atgtaggggcctgaggtgacggcgttcacctgctcgaggag 365
              ||||| || || ||| || | |||||||||| |||||||||
Sbjct: 170101 atgtacggtcccgagctggccgcgttcacctcctcgaggag 170061
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 426      gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
                ||||||||| |||||||||  |||   ||||||||||||||||||| |||||||||| ||
Sbjct: 11744307 gaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcgtcggccctgac 11744366

                             
Query: 486      catgtcctcgaac 498
                |||| ||||||||
Sbjct: 11744367 catgccctcgaac 11744379



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                            
Query: 426      gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
                |||||||||||| | |||| |||| | || |||||||||||||| ||||||||| |||||
Sbjct: 13009329 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 13009388

                 
Query: 486      c 486
                |
Sbjct: 13009389 c 13009389



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                            
Query: 265      gtgagggtgctccccaccgcacaccttagcatgaacatgccacctacgtttgcagagctc 324
                ||||| ||||| || || || ||||| |||||| ||| ||| || || || || ||||||
Sbjct: 11744158 gtgagcgtgctgccgacggcgcacctgagcatgtacacgccgccgacattggcggagctc 11744217

                                                         
Query: 325      atgtaggggcctgaggtgacggcgttcacctgctcgaggag 365
                ||||| || || ||| || | |||||||||| |||||||||
Sbjct: 11744218 atgtacggtcccgagctggccgcgttcacctcctcgaggag 11744258
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                            
Query: 426      gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
                ||||||||| |||||||||  |||   || |||||||||||||||| ||||| |||||||
Sbjct: 32494749 gaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacctcgcgtcgcccctcac 32494808

                                         
Query: 486      catgtcctcgaactccacggccatg 510
                |||| |||||||| || ||||||||
Sbjct: 32494809 catggcctcgaacgccgcggccatg 32494833
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                         
Query: 426   gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
             ||||||||| |||||||||  |||   || |||||||||||||||| ||||| |||||||
Sbjct: 82270 gaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacctcgcgtcgcccctcac 82329

                                      
Query: 486   catgtcctcgaactccacggccatg 510
             |||| |||||||| || ||||||||
Sbjct: 82330 catggcctcgaacgccgcggccatg 82354
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>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan
            decarboxylase, complete cds
          Length = 1602

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
            ||||||||| |||||||||  |||   || |||||||||||||||| ||||| |||||||
Sbjct: 1344 gaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacctcgcgtcgcccctcac 1285

                                     
Query: 486  catgtcctcgaactccacggccatg 510
            |||| |||||||| || ||||||||
Sbjct: 1284 catggcctcgaacgccgcggccatg 1260
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>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full
            insert sequence
          Length = 1922

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
            ||||||||| |||||||||  |||   || |||||||||||||||| ||||| |||||||
Sbjct: 1467 gaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacctcgcgtcgcccctcac 1408

                                     
Query: 486  catgtcctcgaactccacggccatg 510
            |||| |||||||| || ||||||||
Sbjct: 1407 catggcctcgaacgccgcggccatg 1383
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                            
Query: 426      gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
                ||||||||| |||||||||  |||   ||||||||||||||||||| |||||||||| ||
Sbjct: 11751647 gaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcgtcggccctgac 11751706

                             
Query: 486      catgtcctcgaac 498
                |||| ||||||||
Sbjct: 11751707 catgccctcgaac 11751719



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                            
Query: 426      gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
                |||||||||||| | |||| |||| | || |||||||||||||| ||||||||| |||||
Sbjct: 13016669 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 13016728

                 
Query: 486      c 486
                |
Sbjct: 13016729 c 13016729



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Plus

                                                                            
Query: 265      gtgagggtgctccccaccgcacaccttagcatgaacatgccacctacgtttgcagagctc 324
                ||||| ||||| || || || ||||| |||||| ||| ||| || || || || ||||||
Sbjct: 11751498 gtgagcgtgctgccgacggcgcacctgagcatgtacacgccgccgacattggcggagctc 11751557

                                                         
Query: 325      atgtaggggcctgaggtgacggcgttcacctgctcgaggag 365
                ||||| || || ||| || | |||||||||| |||||||||
Sbjct: 11751558 atgtacggtcccgagctggccgcgttcacctcctcgaggag 11751598
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>ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative tyrosine/dopa
            decarboxylase (OSJNBa0050N08.21), mRNA
          Length = 1509

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 426  gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
            |||||||||||| | |||| |||| | || |||||||||||||| ||||||||| |||||
Sbjct: 1293 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 1234

             
Query: 486  c 486
            |
Sbjct: 1233 c 1233
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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08,
              complete sequence
          Length = 144593

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                          
Query: 426    gaagcacacgagcgcgaacgtcctttccgtcaccacctcgaacctctcgtcggccctcac 485
              |||||||||||| | |||| |||| | || |||||||||||||| ||||||||| |||||
Sbjct: 108245 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 108304

               
Query: 486    c 486
              |
Sbjct: 108305 c 108305
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>dbj|AB028848.1| Tenebrio molitor mRNA for dopa decarboxylase, complete cds
          Length = 1596

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 462  ctcgaacctctcgtcggccctcacca 487
            ||||||||||||||||| ||||||||
Sbjct: 1191 ctcgaacctctcgtcggacctcacca 1166
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>gb|AC103355.9| Mus musculus chromosome 14, clone RP24-482C10, complete sequence
          Length = 192348

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tctgttttgccaataatatag 42
             |||||||||||||||||||||
Sbjct: 32252 tctgttttgccaataatatag 32272
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>emb|AL121911.15|HSDJ989D7 Human DNA sequence from clone RP5-989D7 on chromosome 20 Contains part
             of a novel gene, complete sequence
          Length = 119790

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    cttattgttgagtttaaggag 111
             |||||||||||||||||||||
Sbjct: 26210 cttattgttgagtttaaggag 26230
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>dbj|AK144259.1| Mus musculus 16 days neonate male diencephalon cDNA, RIKEN
            full-length enriched library, clone:G630002H13
            product:unclassifiable, full insert sequence
          Length = 4596

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   ctgttttgccaataatataga 43
            |||||||||||||||||||||
Sbjct: 4353 ctgttttgccaataatataga 4333
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>dbj|AK012876.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810037O22
           product:unclassifiable, full insert sequence
          Length = 2211

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 22  tctgttttgccaataatatag 42
           |||||||||||||||||||||
Sbjct: 836 tctgttttgccaataatatag 856
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>gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, complete sequence
          Length = 178801

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   ctgttttgccaataatataga 43
            |||||||||||||||||||||
Sbjct: 3541 ctgttttgccaataatataga 3561
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>gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, complete sequence
          Length = 177196

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     ctgttttgccaataatataga 43
              |||||||||||||||||||||
Sbjct: 147204 ctgttttgccaataatataga 147224
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>gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome 14, complete sequence
          Length = 252394

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     tctgttttgccaataatatag 42
              |||||||||||||||||||||
Sbjct: 179115 tctgttttgccaataatatag 179135
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>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    ccttagcatgaacatgccac 307
              ||||||||||||||||||||
Sbjct: 124534 ccttagcatgaacatgccac 124553
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>ref|NM_003708.2| Homo sapiens retinol dehydrogenase 16 (all-trans) (RDH16), mRNA
          Length = 2425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 tacttagagcagagggtgtg 185
           ||||||||||||||||||||
Sbjct: 400 tacttagagcagagggtgtg 419
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     gagggtgtggatgatctcca 196
               ||||||||||||||||||||
Sbjct: 1738036 gagggtgtggatgatctcca 1738017
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>gb|AC129315.3| Mus musculus BAC clone RP23-407E2 from chromosome 18, complete sequence
          Length = 183462

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   atggaatagagattacttagagca 176
             ||||||||||| ||||||||||||
Sbjct: 67121 atggaatagagtttacttagagca 67098
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>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169583

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     ttattgttgagtttaaggag 111
              ||||||||||||||||||||
Sbjct: 107037 ttattgttgagtttaaggag 107056
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>emb|BX927166.14| Zebrafish DNA sequence from clone DKEY-28M24 in linkage group 18,
             complete sequence
          Length = 108091

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    tgttttgccaataatatagataca 47
             |||||||||||||||||| |||||
Sbjct: 24267 tgttttgccaataatatatataca 24290
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>gb|AC105201.3| Homo sapiens chromosome 18, clone RP11-244M2, complete sequence
          Length = 151032

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     ttattgttgagtttaaggag 111
              ||||||||||||||||||||
Sbjct: 105232 ttattgttgagtttaaggag 105213
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>gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aatacatactgatctgtttt 29
              ||||||||||||||||||||
Sbjct: 144759 aatacatactgatctgtttt 144778
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>gb|AC011139.8| Homo sapiens chromosome 18, clone RP11-1I2, complete sequence
          Length = 180360

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ttattgttgagtttaaggag 111
             ||||||||||||||||||||
Sbjct: 14101 ttattgttgagtttaaggag 14082
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ctgttttgccaataatatagatac 46
              |||||||||||||||||| |||||
Sbjct: 422700 ctgttttgccaataatattgatac 422723
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>gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, complete sequence
          Length = 175912

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aatacatactgatctgtttt 29
             ||||||||||||||||||||
Sbjct: 15056 aatacatactgatctgtttt 15075
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 485     ccatgtcctcgaactccacggcca 508
               ||||||||||||||| ||||||||
Sbjct: 2572019 ccatgtcctcgaactgcacggcca 2572042
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>gb|AC020969.2|AC020969 Mus musculus chromosome 18 clone RP23-19K11, complete sequence
          Length = 179771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   atggaatagagattacttagagca 176
             ||||||||||| ||||||||||||
Sbjct: 82667 atggaatagagtttacttagagca 82690
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ggcgttcacctgctcgagga 364
               ||||||||||||||||||||
Sbjct: 3124482 ggcgttcacctgctcgagga 3124501
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>gb|AF086735.1|AF086735 Homo sapiens retinol dehydrogenase mRNA, complete cds
          Length = 2425

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 tacttagagcagagggtgtg 185
           ||||||||||||||||||||
Sbjct: 400 tacttagagcagagggtgtg 419
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 372   gttgaggtcgttggccgtcttttg 395
             |||||||| |||||||||||||||
Sbjct: 24389 gttgaggttgttggccgtcttttg 24366
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>emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chromosome 11, complete
             sequence
          Length = 168981

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ccatcttcccaaggatcacg 213
             ||||||||||||||||||||
Sbjct: 96421 ccatcttcccaaggatcacg 96440
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>emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chromosome X, complete
              sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ctccgtgagggtgctcccca 280
              ||||||||||||||||||||
Sbjct: 156227 ctccgtgagggtgctcccca 156208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,441,170
Number of Sequences: 3902068
Number of extensions: 3441170
Number of successful extensions: 70754
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70509
Number of HSP's gapped (non-prelim): 245
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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