Clone Name | rbart41c03 |
---|---|
Clone Library Name | barley_pub |
>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)| ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 461 Score = 79.7 bits (195), Expect = 3e-15 Identities = 30/62 (48%), Positives = 45/62 (72%) Frame = -3 Query: 453 GGMDCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSC 274 G +DC PI+ GG C+ P+++Q HA+Y MN Y+++NG + CDF TG+VT+ DPS+G C Sbjct: 398 GFVDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457 Query: 273 NF 268 + Sbjct: 458 KY 459
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 402 Score = 71.2 bits (173), Expect = 1e-12 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Frame = -3 Query: 459 CGGGM-DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283 CG G +C I+PG CY+P+ V+GHA++A N Y++ G+ CDF ++TT DPS Sbjct: 292 CGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSH 351 Query: 282 GSCNF 268 GSC F Sbjct: 352 GSCIF 356
>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 501 Score = 66.2 bits (160), Expect = 4e-11 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = -3 Query: 459 CGGG-MDCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283 CG G +DC + G CYEPD V H+ YA N Y++ G+ CDF VTT DPS Sbjct: 380 CGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSR 439 Query: 282 GSCNF 268 G+C F Sbjct: 440 GTCVF 444
>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 505 Score = 59.3 bits (142), Expect = 5e-09 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = -3 Query: 459 CGGGM-DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283 CG G +C I+PG CY P+ V+ HA++A N Y++ CDF T + TT DPS+ Sbjct: 382 CGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSY 441 Query: 282 GSCNFT 265 +C +T Sbjct: 442 RTCAYT 447
>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Anther-specific protein A6) Length = 478 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = -3 Query: 441 CGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268 C + PG CYEP ++ HA+YA+N Y+ C F TT +P C F Sbjct: 416 CAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKF 473
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 484 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = -3 Query: 444 DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268 DC + G C + Q + +YA N Y++ + Q + C F +V+T DPS GSC F Sbjct: 391 DCTSLGYGSSCGNLNLAQ-NVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKF 448
>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 477 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = -3 Query: 444 DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268 DC + G C D Q + +YA N Y++ Q + C F VT DPS G+C F Sbjct: 388 DCTSLGVGTSCANLDGKQ-NISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTCRF 445
>SURF4_FUGRU (O57590) Surfeit locus protein 4| Length = 269 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -2 Query: 256 RAYFTWREARGLCHCVWCSTYFLCT-FFLSNLLG 158 R +F W E R W YFL T F L NL+G Sbjct: 43 RMWFQWNEQRDYIEATWSCGYFLATCFVLLNLIG 76
>PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regulated protein 2)| Length = 546 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Frame = -3 Query: 447 MDCGPIRPGGR-----CYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFG 319 +DC I G Y P + ++ MNLY+ N + + CDFG Sbjct: 402 IDCDGINANGTTGEYGAYSPCHSKDKLSFVMNLYYEQNKESKSACDFG 449
>GLNE_PROAC (Q6A9Z4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 983 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -2 Query: 457 RRGHGLWSDT-AGRAVLRAGHGPGPRGVRHEPL 362 R+ +G WS T +A+LRA HG G R + +E L Sbjct: 783 RKYYGKWSSTWESQALLRASHGAGDRELTNELL 815
>GP120_HUMAN (Q5NUL3) G-protein coupled receptor 120 (G-protein coupled receptor| PGR4) (G-protein coupled receptor GT01) (G-protein coupled receptor 129) Length = 377 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -1 Query: 320 VAPASLPLLTQVLEVATLHNDEGVLYLARSKRT-LSLCLVLNIFLVHLFFVKFI 162 +A +L + V+ L N ++ +AR +R + CLVLN+F L F+ I Sbjct: 39 LAAVETTVLVLIFAVSLLGNVCALVLVARRRRRGATACLVLNLFCADLLFISAI 92
>GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precursor| (Glycoprotein GP115) Length = 559 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Frame = -3 Query: 447 MDCGPIRPGGRC-----YEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTT 298 +DC I G Y T + ++ MNLY+ +G + DC F + + T Sbjct: 401 VDCSGISANGTAGKYGAYSFCTPKEQLSFVMNLYYEKSGGSKSDCSFSGSATLQT 455
>RPOC_MYCMO (Q6KI08) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1424 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Frame = -3 Query: 126 GNTERLVGNRKISIPRV-----LPHSRCHLHVYLFWFFKF*KSHIS 4 GNTE + +P++ + H R H + FWFFK S IS Sbjct: 87 GNTEECKREKPEILPKISRRSRMGHIRLHAPIVHFWFFKVDNSIIS 132
>SALL1_HUMAN (Q9NSC2) Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like| transcription factor 1) (HSal1) Length = 1324 Score = 23.5 bits (49), Expect(2) = 7.9 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 121 VAKKCMATF*ILVLINLTKKRCTRNML 201 V +C A F L + L KK CT+N L Sbjct: 44 VCGRCCAEFFELSDLLLHKKNCTKNQL 70 Score = 23.5 bits (49), Expect(2) = 7.9 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +3 Query: 48 REGDTWNGGAHEE*KSCDFQPAARCC 125 R+GDT G KS D RCC Sbjct: 24 RDGDTEKGQPSRPTKSKDAHVCGRCC 49
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 459 CGGGMDCGPIRPGGRCYEPDTVQG 388 CGGG DC PI G+C+ D+ G Sbjct: 1526 CGGGADCDPI--SGQCHCVDSYMG 1547
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +3 Query: 375 RTPRGPGPCPARSTARPAVSDHSPC 449 RT GP PCP A P +H C Sbjct: 73 RTDFGPAPCPDGPQAEPCGDEHEEC 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,616,477 Number of Sequences: 219361 Number of extensions: 1505136 Number of successful extensions: 4295 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3984 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4289 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)