ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (... 80 3e-15
2E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 ... 71 1e-12
3E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 ... 66 4e-11
4E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 59 5e-09
5EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... 47 2e-05
6E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 ... 42 8e-04
7E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 ... 39 0.005
8SURF4_FUGRU (O57590) Surfeit locus protein 4 32 1.1
9PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regula... 31 1.8
10GLNE_PROAC (Q6A9Z4) Glutamate-ammonia-ligase adenylyltransferase... 29 5.2
11GP120_HUMAN (Q5NUL3) G-protein coupled receptor 120 (G-protein c... 29 6.8
12GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precur... 29 6.8
13RPOC_MYCMO (Q6KI08) DNA-directed RNA polymerase beta' chain (EC ... 29 6.8
14SALL1_HUMAN (Q9NSC2) Sal-like protein 1 (Zinc finger protein SAL... 23 7.9
15MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains... 28 8.9
16IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.1... 28 8.9

>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 461

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 30/62 (48%), Positives = 45/62 (72%)
 Frame = -3

Query: 453 GGMDCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSC 274
           G +DC PI+ GG C+ P+++Q HA+Y MN Y+++NG  +  CDF  TG+VT+ DPS+G C
Sbjct: 398 GFVDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457

Query: 273 NF 268
            +
Sbjct: 458 KY 459



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>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 402

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = -3

Query: 459 CGGGM-DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283
           CG G  +C  I+PG  CY+P+ V+GHA++A N Y++  G+    CDF    ++TT DPS 
Sbjct: 292 CGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSH 351

Query: 282 GSCNF 268
           GSC F
Sbjct: 352 GSCIF 356



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>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 501

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = -3

Query: 459 CGGG-MDCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283
           CG G +DC  +  G  CYEPD V  H+ YA N Y++  G+    CDF     VTT DPS 
Sbjct: 380 CGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSR 439

Query: 282 GSCNF 268
           G+C F
Sbjct: 440 GTCVF 444



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -3

Query: 459 CGGGM-DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSF 283
           CG G  +C  I+PG  CY P+ V+ HA++A N Y++        CDF  T + TT DPS+
Sbjct: 382 CGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSY 441

Query: 282 GSCNFT 265
            +C +T
Sbjct: 442 RTCAYT 447



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>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Anther-specific protein A6)
          Length = 478

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 441 CGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268
           C  + PG  CYEP ++  HA+YA+N Y+         C F      TT +P    C F
Sbjct: 416 CAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKF 473



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>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 484

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 444 DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268
           DC  +  G  C   +  Q + +YA N Y++ + Q +  C F    +V+T DPS GSC F
Sbjct: 391 DCTSLGYGSSCGNLNLAQ-NVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKF 448



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>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 477

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -3

Query: 444 DCGPIRPGGRCYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTTVDPSFGSCNF 268
           DC  +  G  C   D  Q + +YA N Y++   Q +  C F     VT  DPS G+C F
Sbjct: 388 DCTSLGVGTSCANLDGKQ-NISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTCRF 445



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>SURF4_FUGRU (O57590) Surfeit locus protein 4|
          Length = 269

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 256 RAYFTWREARGLCHCVWCSTYFLCT-FFLSNLLG 158
           R +F W E R      W   YFL T F L NL+G
Sbjct: 43  RMWFQWNEQRDYIEATWSCGYFLATCFVLLNLIG 76



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>PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regulated protein 2)|
          Length = 546

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 447 MDCGPIRPGGR-----CYEPDTVQGHAAYAMNLYFRSNGQHEFDCDFG 319
           +DC  I   G       Y P   +   ++ MNLY+  N + +  CDFG
Sbjct: 402 IDCDGINANGTTGEYGAYSPCHSKDKLSFVMNLYYEQNKESKSACDFG 449



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>GLNE_PROAC (Q6A9Z4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 983

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 457 RRGHGLWSDT-AGRAVLRAGHGPGPRGVRHEPL 362
           R+ +G WS T   +A+LRA HG G R + +E L
Sbjct: 783 RKYYGKWSSTWESQALLRASHGAGDRELTNELL 815



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>GP120_HUMAN (Q5NUL3) G-protein coupled receptor 120 (G-protein coupled receptor|
           PGR4) (G-protein coupled receptor GT01) (G-protein
           coupled receptor 129)
          Length = 377

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 320 VAPASLPLLTQVLEVATLHNDEGVLYLARSKRT-LSLCLVLNIFLVHLFFVKFI 162
           +A     +L  +  V+ L N   ++ +AR +R   + CLVLN+F   L F+  I
Sbjct: 39  LAAVETTVLVLIFAVSLLGNVCALVLVARRRRRGATACLVLNLFCADLLFISAI 92



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>GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precursor|
           (Glycoprotein GP115)
          Length = 559

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -3

Query: 447 MDCGPIRPGGRC-----YEPDTVQGHAAYAMNLYFRSNGQHEFDCDFGRTGVVTT 298
           +DC  I   G       Y   T +   ++ MNLY+  +G  + DC F  +  + T
Sbjct: 401 VDCSGISANGTAGKYGAYSFCTPKEQLSFVMNLYYEKSGGSKSDCSFSGSATLQT 455



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>RPOC_MYCMO (Q6KI08) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1424

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -3

Query: 126 GNTERLVGNRKISIPRV-----LPHSRCHLHVYLFWFFKF*KSHIS 4
           GNTE     +   +P++     + H R H  +  FWFFK   S IS
Sbjct: 87  GNTEECKREKPEILPKISRRSRMGHIRLHAPIVHFWFFKVDNSIIS 132



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>SALL1_HUMAN (Q9NSC2) Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like|
           transcription factor 1) (HSal1)
          Length = 1324

 Score = 23.5 bits (49), Expect(2) = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 121 VAKKCMATF*ILVLINLTKKRCTRNML 201
           V  +C A F  L  + L KK CT+N L
Sbjct: 44  VCGRCCAEFFELSDLLLHKKNCTKNQL 70



 Score = 23.5 bits (49), Expect(2) = 7.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 48  REGDTWNGGAHEE*KSCDFQPAARCC 125
           R+GDT  G      KS D     RCC
Sbjct: 24  RDGDTEKGQPSRPTKSKDAHVCGRCC 49



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>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1574

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 459  CGGGMDCGPIRPGGRCYEPDTVQG 388
            CGGG DC PI   G+C+  D+  G
Sbjct: 1526 CGGGADCDPI--SGQCHCVDSYMG 1547



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>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol|
           1,4,5-trisphosphate 3-kinase C) (IP3K-C)
          Length = 678

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 375 RTPRGPGPCPARSTARPAVSDHSPC 449
           RT  GP PCP    A P   +H  C
Sbjct: 73  RTDFGPAPCPDGPQAEPCGDEHEEC 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,616,477
Number of Sequences: 219361
Number of extensions: 1505136
Number of successful extensions: 4295
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4289
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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