ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PMD1_YEAST (P32634) Negative regulator of sporulation PMD1 29 5.7
2Y015_BUCBP (P59471) UPF0161 protein bbp_015 29 5.7
3UROM_CANFA (Q862Z3) Uromodulin precursor (Tamm-Horsfall urinary ... 29 7.5
4HLES_DROME (Q02308) Protein hairless 28 9.7

>PMD1_YEAST (P32634) Negative regulator of sporulation PMD1|
          Length = 1753

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 LGAKRSSSRYTVASDIPPPPAPSRSATDG 190
           LG    S R T AS + PPP   +S  DG
Sbjct: 771 LGLSEQSGRSTRASSVSPPPVYKKSTNDG 799



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>Y015_BUCBP (P59471) UPF0161 protein bbp_015|
          Length = 85

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 101 SRCMLVYLHCICNYVSVSLSPYC 33
           SRC+++ + C   Y+SV LSP C
Sbjct: 9   SRCLILIILCYQRYISVFLSPRC 31



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>UROM_CANFA (Q862Z3) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)|
           (THP)
          Length = 642

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 89  LVYLHC---ICNYVSVSLSPYCSETLCRNSG 6
           LVYLHC   +C+ ++    P CS T  R+ G
Sbjct: 562 LVYLHCEVYLCDIINEKCKPTCSGTRFRSGG 592



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>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 315 GELSAALRGKKRQAVPA--MSHAEH-QHQMXXXXXXXXXXXXATKPSVADLEGAGGGG 151
           G  S++  GKK    PA  +S+  H QH M             T P   D+ G+ GGG
Sbjct: 676 GSSSSSSSGKKCGDHPAAIISNVHHPQHSMYQPSSSSYPRALLTSPKSPDVSGSNGGG 733


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,659,910
Number of Sequences: 219361
Number of extensions: 1019700
Number of successful extensions: 3148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3137
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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