Clone Name | rbart41b08 |
---|---|
Clone Library Name | barley_pub |
>CAPP_GLOVI (Q7NNJ7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 939 Score = 32.3 bits (72), Expect = 0.29 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = +2 Query: 164 AGLRLRVGT*CRHRSRLAELPGERRLTVPLLGTLDKPREELPWVVKHLHVLRPQLLVHL 340 AGL +R + RH L E+ + RLT LD+ + L W+V+ L LRP + L Sbjct: 423 AGLDVRQDS-TRHEDTLTEVSAKLRLTATPYAELDE-QARLEWLVRELQTLRPLIPAEL 479
>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide| hydrolase) (Epoxide hydratase) Length = 455 Score = 31.2 bits (69), Expect = 0.66 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 63 ETGMQQQHPEHWRLDTFYFTRPLDHPCF 146 ET ++ H H R+D F FT PL+ CF Sbjct: 54 ETSDEEIHDLHQRIDKFRFTPPLEDSCF 81
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 30.8 bits (68), Expect = 0.86 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -2 Query: 352 VAVLKVDEQLRAEDVEVFYDPGELLAGLIKGPKEGDGEAALP 227 V V VDE + E E FY+ G LA + P + P Sbjct: 188 VCVFHVDEDTKVEKAEFFYERGNFLASFLTAPAASASASGCP 229
>MMPLD_STRCO (Q9XA86) Putative membrane protein SCO0839| Length = 705 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -2 Query: 331 EQLRAEDVEVFYDPGELLAGLIKGPKEGDGEAALPGKLREAATVSASGADAQP 173 E R D + + E L ++ +GDG+AA+ ++AAT S +G + P Sbjct: 57 ESTRVVDAQQAFQQDETLPVIVVWTADGDGDAAVTAH-QQAATRSVAGLEGDP 108
>DAB2_RAT (O88797) Disabled homolog 2 (DOC-2) (Mitogen-responsive| phosphoprotein) (C9) Length = 768 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 63 ETGMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDA 197 + G+ Q+H +H D ++ P P PR+G G SA ++ Sbjct: 689 KVGIPQEHVDHDDFDANQLLNKINEPPKPAPRQGVLSGTKSADNS 733
>DAB2_MOUSE (P98078) Disabled homolog 2 (DOC-2) (Mitogen-responsive| phosphoprotein) Length = 766 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 63 ETGMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDA 197 + G+ Q+H +H D ++ P P PR+G G SA ++ Sbjct: 687 KVGIPQEHVDHDDFDANQLLNKINEPPKPAPRQGVLLGTKSADNS 731
>SYA_FRATT (Q5NFW7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 865 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239 E+FYD GE +AG + G E DG+ Sbjct: 174 EIFYDHGEDVAGGLPGTPEQDGD 196
>CP4S3_DROME (Q9VXY0) Probable cytochrome P450 4s3 (EC 1.14.-.-) (CYPIVS3)| Length = 495 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%) Frame = -1 Query: 194 IRCRRAAAGLPLPWFG-------KAGVIEWPREIKRVESPVFRV 84 +R +R A LP P G K ++ W +E++ PVFR+ Sbjct: 26 LRLQRFAKTLPGPTIGELIANVKKGEILNWLKELREKHGPVFRI 69
>SYA_RICFE (Q4UJT5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 878 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -2 Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239 E+FYD GE + G + G K+ DG+ Sbjct: 176 EIFYDHGEQIYGGLPGTKDEDGD 198
>SYA_RICCN (Q92G00) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 878 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -2 Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239 E+FYD GE + G + G K+ DG+ Sbjct: 176 EIFYDHGEQIYGGLPGTKDEDGD 198
>NXS3_NAJMO (P01432) Short neurotoxin 3 (Neurotoxin III) (NMM III)| Length = 62 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -3 Query: 345 CSRWTSNCGRRTWR 304 CSRW +NC ++ WR Sbjct: 17 CSRWETNCYKKRWR 30
>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)| (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24 (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 605 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 227 GERRLTVPLLGTLDKPREELPWVVKHLHVLRPQLLVHLEH 346 G RR T + GT +L WV+KH L P + +E+ Sbjct: 146 GRRRGTTAVYGT------DLAWVLKHFSDLEPSIAAQIEN 179
>UNG_HHV11 (P10186) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 334 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -2 Query: 259 PKEGDGEAALPGKLREAATVSASGADAQPQAC 164 P++ D + PG +A+T + G+ +P AC Sbjct: 29 PQKADADDPTPGASNDASTETRPGSGGEPAAC 60
>RS1_RHIME (P14129) 30S ribosomal protein S1| Length = 568 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -2 Query: 325 LRAEDVEVFYDPGELLAGLIKGPKEGDGEAALPGKLREAATVSA 194 +RA ++V D + G+ + ++ GEAA G+LR+ A VSA Sbjct: 421 VRAVVLDVDVDKERISLGIKQLGRDAVGEAAASGELRKNAVVSA 464
>NHR19_CAEEL (Q09528) Nuclear hormone receptor family member nhr-19| Length = 477 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +1 Query: 28 SPKLTIKISLIAKQGCNSNTLNTGDST-RFISRGHSITPAFPNQG 159 S + + ++++AKQGC S T +G ST R++ G S PN G Sbjct: 210 SRQAAVDLAVLAKQGCMSITDTSGPSTSRYVPGGTS-----PNGG 249
>Y1684_METTH (O27719) Hypothetical protein MTH1684| Length = 431 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 229 PGKLREAATVSASGADAQPQACP 161 PG R+AA+V +G A P CP Sbjct: 86 PGSFRKAASVELNGIPAYPGPCP 108
>Y084_METJA (Q60392) Hypothetical ATP-binding protein MJ0084| Length = 249 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +1 Query: 43 IKISLIAKQGCNSNTLNTGDSTRFISRGHSI 135 +KIS+ K GC +++ T + F +GH++ Sbjct: 1 MKISICGKGGCGKSSITTLLAKEFAKKGHNV 31
>HIS6_SYNEL (Q8DJN7) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 281 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -3 Query: 198 RHQVPTRSRRPAPSLVRESRGD 133 +HQVP R P P RE GD Sbjct: 251 QHQVPVRQAEPLPQPAREGLGD 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,154,747 Number of Sequences: 219361 Number of extensions: 805907 Number of successful extensions: 3440 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3440 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)