ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAPP_GLOVI (Q7NNJ7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 32 0.29
2HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal... 31 0.66
3PRPX_HORVU (P16273) Pathogen-related protein 31 0.86
4MMPLD_STRCO (Q9XA86) Putative membrane protein SCO0839 29 2.5
5DAB2_RAT (O88797) Disabled homolog 2 (DOC-2) (Mitogen-responsive... 28 4.3
6DAB2_MOUSE (P98078) Disabled homolog 2 (DOC-2) (Mitogen-responsi... 28 4.3
7SYA_FRATT (Q5NFW7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 5.6
8CP4S3_DROME (Q9VXY0) Probable cytochrome P450 4s3 (EC 1.14.-.-) ... 28 5.6
9SYA_RICFE (Q4UJT5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 5.6
10SYA_RICCN (Q92G00) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 5.6
11NXS3_NAJMO (P01432) Short neurotoxin 3 (Neurotoxin III) (NMM III) 28 7.3
12VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ... 28 7.3
13UNG_HHV11 (P10186) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 27 9.5
14RS1_RHIME (P14129) 30S ribosomal protein S1 27 9.5
15NHR19_CAEEL (Q09528) Nuclear hormone receptor family member nhr-19 27 9.5
16Y1684_METTH (O27719) Hypothetical protein MTH1684 27 9.5
17Y084_METJA (Q60392) Hypothetical ATP-binding protein MJ0084 27 9.5
18HIS6_SYNEL (Q8DJN7) Imidazole glycerol phosphate synthase subuni... 27 9.5

>CAPP_GLOVI (Q7NNJ7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 939

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 164 AGLRLRVGT*CRHRSRLAELPGERRLTVPLLGTLDKPREELPWVVKHLHVLRPQLLVHL 340
           AGL +R  +  RH   L E+  + RLT      LD+ +  L W+V+ L  LRP +   L
Sbjct: 423 AGLDVRQDS-TRHEDTLTEVSAKLRLTATPYAELDE-QARLEWLVRELQTLRPLIPAEL 479



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>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide|
           hydrolase) (Epoxide hydratase)
          Length = 455

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 63  ETGMQQQHPEHWRLDTFYFTRPLDHPCF 146
           ET  ++ H  H R+D F FT PL+  CF
Sbjct: 54  ETSDEEIHDLHQRIDKFRFTPPLEDSCF 81



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>PRPX_HORVU (P16273) Pathogen-related protein|
          Length = 235

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 352 VAVLKVDEQLRAEDVEVFYDPGELLAGLIKGPKEGDGEAALP 227
           V V  VDE  + E  E FY+ G  LA  +  P      +  P
Sbjct: 188 VCVFHVDEDTKVEKAEFFYERGNFLASFLTAPAASASASGCP 229



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>MMPLD_STRCO (Q9XA86) Putative membrane protein SCO0839|
          Length = 705

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 331 EQLRAEDVEVFYDPGELLAGLIKGPKEGDGEAALPGKLREAATVSASGADAQP 173
           E  R  D +  +   E L  ++    +GDG+AA+    ++AAT S +G +  P
Sbjct: 57  ESTRVVDAQQAFQQDETLPVIVVWTADGDGDAAVTAH-QQAATRSVAGLEGDP 108



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>DAB2_RAT (O88797) Disabled homolog 2 (DOC-2) (Mitogen-responsive|
           phosphoprotein) (C9)
          Length = 768

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  ETGMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDA 197
           + G+ Q+H +H   D       ++ P  P PR+G   G  SA ++
Sbjct: 689 KVGIPQEHVDHDDFDANQLLNKINEPPKPAPRQGVLSGTKSADNS 733



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>DAB2_MOUSE (P98078) Disabled homolog 2 (DOC-2) (Mitogen-responsive|
           phosphoprotein)
          Length = 766

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 63  ETGMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDA 197
           + G+ Q+H +H   D       ++ P  P PR+G   G  SA ++
Sbjct: 687 KVGIPQEHVDHDDFDANQLLNKINEPPKPAPRQGVLLGTKSADNS 731



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>SYA_FRATT (Q5NFW7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 865

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239
           E+FYD GE +AG + G  E DG+
Sbjct: 174 EIFYDHGEDVAGGLPGTPEQDGD 196



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>CP4S3_DROME (Q9VXY0) Probable cytochrome P450 4s3 (EC 1.14.-.-) (CYPIVS3)|
          Length = 495

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = -1

Query: 194 IRCRRAAAGLPLPWFG-------KAGVIEWPREIKRVESPVFRV 84
           +R +R A  LP P  G       K  ++ W +E++    PVFR+
Sbjct: 26  LRLQRFAKTLPGPTIGELIANVKKGEILNWLKELREKHGPVFRI 69



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>SYA_RICFE (Q4UJT5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 878

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239
           E+FYD GE + G + G K+ DG+
Sbjct: 176 EIFYDHGEQIYGGLPGTKDEDGD 198



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>SYA_RICCN (Q92G00) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 878

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 307 EVFYDPGELLAGLIKGPKEGDGE 239
           E+FYD GE + G + G K+ DG+
Sbjct: 176 EIFYDHGEQIYGGLPGTKDEDGD 198



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>NXS3_NAJMO (P01432) Short neurotoxin 3 (Neurotoxin III) (NMM III)|
          Length = 62

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 345 CSRWTSNCGRRTWR 304
           CSRW +NC ++ WR
Sbjct: 17  CSRWETNCYKKRWR 30



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>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 227 GERRLTVPLLGTLDKPREELPWVVKHLHVLRPQLLVHLEH 346
           G RR T  + GT      +L WV+KH   L P +   +E+
Sbjct: 146 GRRRGTTAVYGT------DLAWVLKHFSDLEPSIAAQIEN 179



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>UNG_HHV11 (P10186) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 334

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 259 PKEGDGEAALPGKLREAATVSASGADAQPQAC 164
           P++ D +   PG   +A+T +  G+  +P AC
Sbjct: 29  PQKADADDPTPGASNDASTETRPGSGGEPAAC 60



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>RS1_RHIME (P14129) 30S ribosomal protein S1|
          Length = 568

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 325 LRAEDVEVFYDPGELLAGLIKGPKEGDGEAALPGKLREAATVSA 194
           +RA  ++V  D   +  G+ +  ++  GEAA  G+LR+ A VSA
Sbjct: 421 VRAVVLDVDVDKERISLGIKQLGRDAVGEAAASGELRKNAVVSA 464



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>NHR19_CAEEL (Q09528) Nuclear hormone receptor family member nhr-19|
          Length = 477

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 28  SPKLTIKISLIAKQGCNSNTLNTGDST-RFISRGHSITPAFPNQG 159
           S +  + ++++AKQGC S T  +G ST R++  G S     PN G
Sbjct: 210 SRQAAVDLAVLAKQGCMSITDTSGPSTSRYVPGGTS-----PNGG 249



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>Y1684_METTH (O27719) Hypothetical protein MTH1684|
          Length = 431

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 229 PGKLREAATVSASGADAQPQACP 161
           PG  R+AA+V  +G  A P  CP
Sbjct: 86  PGSFRKAASVELNGIPAYPGPCP 108



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>Y084_METJA (Q60392) Hypothetical ATP-binding protein MJ0084|
          Length = 249

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 43  IKISLIAKQGCNSNTLNTGDSTRFISRGHSI 135
           +KIS+  K GC  +++ T  +  F  +GH++
Sbjct: 1   MKISICGKGGCGKSSITTLLAKEFAKKGHNV 31



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>HIS6_SYNEL (Q8DJN7) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 281

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 198 RHQVPTRSRRPAPSLVRESRGD 133
           +HQVP R   P P   RE  GD
Sbjct: 251 QHQVPVRQAEPLPQPAREGLGD 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,154,747
Number of Sequences: 219361
Number of extensions: 805907
Number of successful extensions: 3440
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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