ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41b06 |
|---|---|
| Clone Library Name | barley_pub |
>NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear distribution| protein C homolog) Length = 341 Score = 129 bits (325), Expect = 3e-30 Identities = 57/83 (68%), Positives = 69/83 (83%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322 K N+MEWW ++ DPE++T+K+ PENSKLS+LD ETR VEKMM+DQRQK MGLPTSDE Sbjct: 257 KINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 316 Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253 +KQD+LK+FM QHPEMDFS K Sbjct: 317 QKKQDILKKFMEQHPEMDFSKAK 339
>NUDC_HUMAN (Q9Y266) Nuclear migration protein nudC (Nuclear distribution| protein C homolog) Length = 331 Score = 128 bits (322), Expect = 8e-30 Identities = 56/83 (67%), Positives = 69/83 (83%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322 K N+MEWW ++ DPE++T+K+ PENSKLS+LD ETR VEKMM+DQRQK MGLPTSDE Sbjct: 247 KINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 306 Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253 +KQ++LK+FM QHPEMDFS K Sbjct: 307 QKKQEILKKFMDQHPEMDFSKAK 329
>NUDC_RAT (Q63525) Nuclear migration protein nudC (Nuclear distribution| protein C homolog) (c15) Length = 332 Score = 128 bits (321), Expect = 1e-29 Identities = 56/83 (67%), Positives = 69/83 (83%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322 K N+MEWW ++ DPE++T+K+ PENSKLS+LD ETR VEKMM+DQRQK MGLPTSDE Sbjct: 248 KINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 307 Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253 +KQ++LK+FM QHPEMDFS K Sbjct: 308 QKKQEILKKFMDQHPEMDFSKAK 330
>NUDC_MOUSE (O35685) Nuclear migration protein nudC (Nuclear distribution| protein C homolog) (Silica-induced gene 92 protein) (SIG-92) Length = 332 Score = 128 bits (321), Expect = 1e-29 Identities = 56/83 (67%), Positives = 69/83 (83%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322 K N+MEWW ++ DPE++T+K+ PENSKLS+LD ETR VEKMM+DQRQK MGLPTSDE Sbjct: 248 KINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 307 Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253 +KQ++LK+FM QHPEMDFS K Sbjct: 308 QKKQEILKKFMDQHPEMDFSKAK 330
>NUDC_EMENI (P17624) Nuclear movement protein nudC| Length = 198 Score = 119 bits (299), Expect = 4e-27 Identities = 53/84 (63%), Positives = 65/84 (77%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322 K NQMEWW V+ P++D K+ PENS LS+LD ETR VEKMM+DQRQK+MG PTSDE Sbjct: 114 KVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDE 173 Query: 321 MQKQDMLKRFMSQHPEMDFSNVKM 250 +K D+LK+F +HPEMDFSN K+ Sbjct: 174 QRKMDILKKFQKEHPEMDFSNAKI 197
>ACPM_ARATH (P53665) Acyl carrier protein, mitochondrial precursor (ACP)| (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (MtACP-1) Length = 122 Score = 32.0 bits (71), Expect = 0.97 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -2 Query: 471 VIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLP--TSDEMQKQDMLK 298 V+K P+VD KV PE ++L ++ TVE +M + + ++ +P +D++ + Sbjct: 53 VVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAI 112 Query: 297 RFMSQHP 277 ++ HP Sbjct: 113 EYVYNHP 119
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = +3 Query: 69 TLCP*EVHLWVLQWKPQSDTKIRSNNQTLNHKTLKLKITRIDVIPP*KTFCISLDPAHLK 248 T+ P E+ WV + P++ ++ S + L + L++ ++D+ + AH+ Sbjct: 80 TILPTEIETWVREHCPENRERVVSLIEDLQRE-LEIPEQQVDMHDMLLEELAPVGTAHIP 138 Query: 249 PSSHLRSPSL 278 P+ HL SP+L Sbjct: 139 PTMHLESPAL 148
>SYE1_CAMJR (Q5HUV1) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA| ligase 1) (GluRS 1) Length = 431 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +2 Query: 200 SSIKNFLHFLGSSTP*AIFTFEKSI 274 S+I N+L LG+ TP IFT EK+I Sbjct: 256 SAIANYLIMLGNKTPCEIFTLEKAI 280
>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1207 Score = 30.0 bits (66), Expect = 3.7 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = -2 Query: 465 KGDPEVDTQKVEPENSKLSELDPETRQT-VEKMMFDQRQKQMGLPTSDEMQKQDMLKRFM 289 +G PE+ +KV+ + ++ EK + +RQK++ + QKQ + + F Sbjct: 74 EGTPEMRVKKVQVDRPPQGHSSRWAQKLEAEKRVKQRRQKEV------DQQKQALTQEFW 127 Query: 288 SQHPEMDFSNVKMA*GVLDPRK 223 + H E N K+A G L P K Sbjct: 128 TLHKEPKIWNKKLA-GYLQPSK 148
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 29.6 bits (65), Expect = 4.8 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = -2 Query: 480 WKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKM---MFDQRQKQMGLPTSDEMQK 313 WK K D + D +PEN K EL + R + K+ MF+Q KQ+ T D ++ Sbjct: 733 WKPSQKRDSQAD----DPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEER 787
>C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty| acid omega-hydroxylase) Length = 514 Score = 29.6 bits (65), Expect = 4.8 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -2 Query: 417 KLSELDPETRQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKRFMSQ-HPEMDF 265 +L E E R +K++ R+K+ L ++ +DML RF+S H + DF Sbjct: 256 RLKEAVTEVRSFAKKLV---REKKRELEEKSSLETEDMLSRFLSSGHSDEDF 304
>NOC3L_PONPY (Q5R952) Nucleolar complex protein 3 homolog (NOC3 protein homolog)| (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) Length = 800 Score = 29.3 bits (64), Expect = 6.3 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 474 SVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367 S I DPE + +K++ S L E DP+ TV K++ Sbjct: 223 SAILSDPESNIKKLKELRSMLMEQDPDVAVTVRKLV 258
>NOC3L_HUMAN (Q8WTT2) Nucleolar complex protein 3 homolog (NOC3 protein homolog)| (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) (Factor for adipocyte differentiation 24) Length = 800 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 474 SVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367 S I DPE + +K++ S L E DP+ TV K++ Sbjct: 223 SAILSDPENNIKKLKELRSMLMEQDPDVAVTVRKLV 258
>NOC3L_CRIGR (Q91Y26) Nucleolar complex protein 3 homolog (NOC3 protein homolog)| (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) Length = 800 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -2 Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367 K Q+ S I DPE + +K++ S L E DP+ TV K++ Sbjct: 214 KKIQIATLASSILSDPESNIKKLKELRSMLMEQDPDVAVTVRKLV 258
>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)| [Contains: Hyaluronan-binding protein 2 50 kDa heavy chain; Hyaluronan-binding protein 2 50 kDa heavy chain alternate form; Hyaluronan-binding protein 2 27 kDa light chain; Hyaluro Length = 558 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%) Frame = -3 Query: 338 CQQVM-KCRSKTCSRGSCLSTQ 276 CQ V KC++ C RG CL TQ Sbjct: 106 CQNVQNKCKNNPCGRGDCLITQ 127
>CENPJ_PANTR (Q5BQN8) Centromere protein J| Length = 1338 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = -2 Query: 453 EVDTQKVEPENSKLSELDPETRQTVEKMMFD----QRQKQMGLPTSDEMQKQDMLK 298 E + +K + EN+ L++L E +EK+ + ++QK L +E +K++M K Sbjct: 915 ETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRK 970
>CENPJ_HUMAN (Q9HC77) Centromere protein J (Centrosomal P4.1-associated protein)| (LAG-3-associated protein) (LYST-interacting protein 1) Length = 1338 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = -2 Query: 453 EVDTQKVEPENSKLSELDPETRQTVEKMMFD----QRQKQMGLPTSDEMQKQDMLK 298 E + +K + EN+ L++L E +EK+ + ++QK L +E +K++M K Sbjct: 914 ETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRK 969 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,585,769 Number of Sequences: 219361 Number of extensions: 1369942 Number of successful extensions: 3925 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3924 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
