ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear dist... 129 3e-30
2NUDC_HUMAN (Q9Y266) Nuclear migration protein nudC (Nuclear dist... 128 8e-30
3NUDC_RAT (Q63525) Nuclear migration protein nudC (Nuclear distri... 128 1e-29
4NUDC_MOUSE (O35685) Nuclear migration protein nudC (Nuclear dist... 128 1e-29
5NUDC_EMENI (P17624) Nuclear movement protein nudC 119 4e-27
6ACPM_ARATH (P53665) Acyl carrier protein, mitochondrial precurso... 32 0.97
7ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SC... 31 2.2
8SYE1_CAMJR (Q5HUV1) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Gl... 30 3.7
9RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial p... 30 3.7
10IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 ... 30 4.8
11C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-de... 30 4.8
12NOC3L_PONPY (Q5R952) Nucleolar complex protein 3 homolog (NOC3 p... 29 6.3
13NOC3L_HUMAN (Q8WTT2) Nucleolar complex protein 3 homolog (NOC3 p... 29 8.2
14NOC3L_CRIGR (Q91Y26) Nucleolar complex protein 3 homolog (NOC3 p... 29 8.2
15HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC ... 29 8.2
16CENPJ_PANTR (Q5BQN8) Centromere protein J 29 8.2
17CENPJ_HUMAN (Q9HC77) Centromere protein J (Centrosomal P4.1-asso... 29 8.2

>NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog)
          Length = 341

 Score =  129 bits (325), Expect = 3e-30
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322
           K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ETR  VEKMM+DQRQK MGLPTSDE
Sbjct: 257 KINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 316

Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253
            +KQD+LK+FM QHPEMDFS  K
Sbjct: 317 QKKQDILKKFMEQHPEMDFSKAK 339



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>NUDC_HUMAN (Q9Y266) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog)
          Length = 331

 Score =  128 bits (322), Expect = 8e-30
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322
           K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ETR  VEKMM+DQRQK MGLPTSDE
Sbjct: 247 KINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 306

Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253
            +KQ++LK+FM QHPEMDFS  K
Sbjct: 307 QKKQEILKKFMDQHPEMDFSKAK 329



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>NUDC_RAT (Q63525) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog) (c15)
          Length = 332

 Score =  128 bits (321), Expect = 1e-29
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322
           K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ETR  VEKMM+DQRQK MGLPTSDE
Sbjct: 248 KINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 307

Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253
            +KQ++LK+FM QHPEMDFS  K
Sbjct: 308 QKKQEILKKFMDQHPEMDFSKAK 330



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>NUDC_MOUSE (O35685) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog) (Silica-induced gene 92 protein)
           (SIG-92)
          Length = 332

 Score =  128 bits (321), Expect = 1e-29
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322
           K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ETR  VEKMM+DQRQK MGLPTSDE
Sbjct: 248 KINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDE 307

Query: 321 MQKQDMLKRFMSQHPEMDFSNVK 253
            +KQ++LK+FM QHPEMDFS  K
Sbjct: 308 QKKQEILKKFMDQHPEMDFSKAK 330



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>NUDC_EMENI (P17624) Nuclear movement protein nudC|
          Length = 198

 Score =  119 bits (299), Expect = 4e-27
 Identities = 53/84 (63%), Positives = 65/84 (77%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLPTSDE 322
           K NQMEWW  V+   P++D  K+ PENS LS+LD ETR  VEKMM+DQRQK+MG PTSDE
Sbjct: 114 KVNQMEWWAHVVTTAPKIDVSKITPENSSLSDLDGETRAMVEKMMYDQRQKEMGAPTSDE 173

Query: 321 MQKQDMLKRFMSQHPEMDFSNVKM 250
            +K D+LK+F  +HPEMDFSN K+
Sbjct: 174 QRKMDILKKFQKEHPEMDFSNAKI 197



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>ACPM_ARATH (P53665) Acyl carrier protein, mitochondrial precursor (ACP)|
           (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)
           (MtACP-1)
          Length = 122

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -2

Query: 471 VIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLP--TSDEMQKQDMLK 298
           V+K  P+VD  KV PE    ++L  ++  TVE +M  + + ++ +P   +D++    +  
Sbjct: 53  VVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAI 112

Query: 297 RFMSQHP 277
            ++  HP
Sbjct: 113 EYVYNHP 119



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>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN|
           domain-containing protein 19)
          Length = 518

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +3

Query: 69  TLCP*EVHLWVLQWKPQSDTKIRSNNQTLNHKTLKLKITRIDVIPP*KTFCISLDPAHLK 248
           T+ P E+  WV +  P++  ++ S  + L  + L++   ++D+          +  AH+ 
Sbjct: 80  TILPTEIETWVREHCPENRERVVSLIEDLQRE-LEIPEQQVDMHDMLLEELAPVGTAHIP 138

Query: 249 PSSHLRSPSL 278
           P+ HL SP+L
Sbjct: 139 PTMHLESPAL 148



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>SYE1_CAMJR (Q5HUV1) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA|
           ligase 1) (GluRS 1)
          Length = 431

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 200 SSIKNFLHFLGSSTP*AIFTFEKSI 274
           S+I N+L  LG+ TP  IFT EK+I
Sbjct: 256 SAIANYLIMLGNKTPCEIFTLEKAI 280



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>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 465 KGDPEVDTQKVEPENSKLSELDPETRQT-VEKMMFDQRQKQMGLPTSDEMQKQDMLKRFM 289
           +G PE+  +KV+ +           ++   EK +  +RQK++      + QKQ + + F 
Sbjct: 74  EGTPEMRVKKVQVDRPPQGHSSRWAQKLEAEKRVKQRRQKEV------DQQKQALTQEFW 127

Query: 288 SQHPEMDFSNVKMA*GVLDPRK 223
           + H E    N K+A G L P K
Sbjct: 128 TLHKEPKIWNKKLA-GYLQPSK 148



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>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1585

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 480 WKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKM---MFDQRQKQMGLPTSDEMQK 313
           WK   K D + D    +PEN K  EL  + R  + K+   MF+Q  KQ+   T D  ++
Sbjct: 733 WKPSQKRDSQAD----DPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEER 787



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>C94A1_VICSA (O81117) Cytochrome P450 94A1 (EC 1.14.-.-) (P450-dependent fatty|
           acid omega-hydroxylase)
          Length = 514

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 417 KLSELDPETRQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKRFMSQ-HPEMDF 265
           +L E   E R   +K++   R+K+  L     ++ +DML RF+S  H + DF
Sbjct: 256 RLKEAVTEVRSFAKKLV---REKKRELEEKSSLETEDMLSRFLSSGHSDEDF 304



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>NOC3L_PONPY (Q5R952) Nucleolar complex protein 3 homolog (NOC3 protein homolog)|
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 800

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 474 SVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367
           S I  DPE + +K++   S L E DP+   TV K++
Sbjct: 223 SAILSDPESNIKKLKELRSMLMEQDPDVAVTVRKLV 258



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>NOC3L_HUMAN (Q8WTT2) Nucleolar complex protein 3 homolog (NOC3 protein homolog)|
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein) (Factor for adipocyte
           differentiation 24)
          Length = 800

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 474 SVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367
           S I  DPE + +K++   S L E DP+   TV K++
Sbjct: 223 SAILSDPENNIKKLKELRSMLMEQDPDVAVTVRKLV 258



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>NOC3L_CRIGR (Q91Y26) Nucleolar complex protein 3 homolog (NOC3 protein homolog)|
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 800

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 501 KHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMM 367
           K  Q+    S I  DPE + +K++   S L E DP+   TV K++
Sbjct: 214 KKIQIATLASSILSDPESNIKKLKELRSMLMEQDPDVAVTVRKLV 258



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>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)|
           [Contains: Hyaluronan-binding protein 2 50 kDa heavy
           chain; Hyaluronan-binding protein 2 50 kDa heavy chain
           alternate form; Hyaluronan-binding protein 2 27 kDa
           light chain; Hyaluro
          Length = 558

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 338 CQQVM-KCRSKTCSRGSCLSTQ 276
           CQ V  KC++  C RG CL TQ
Sbjct: 106 CQNVQNKCKNNPCGRGDCLITQ 127



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>CENPJ_PANTR (Q5BQN8) Centromere protein J|
          Length = 1338

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -2

Query: 453  EVDTQKVEPENSKLSELDPETRQTVEKMMFD----QRQKQMGLPTSDEMQKQDMLK 298
            E + +K + EN+ L++L  E    +EK+  +    ++QK   L   +E +K++M K
Sbjct: 915  ETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRK 970



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>CENPJ_HUMAN (Q9HC77) Centromere protein J (Centrosomal P4.1-associated protein)|
            (LAG-3-associated protein) (LYST-interacting protein 1)
          Length = 1338

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -2

Query: 453  EVDTQKVEPENSKLSELDPETRQTVEKMMFD----QRQKQMGLPTSDEMQKQDMLK 298
            E + +K + EN+ L++L  E    +EK+  +    ++QK   L   +E +K++M K
Sbjct: 914  ETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRK 969


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,585,769
Number of Sequences: 219361
Number of extensions: 1369942
Number of successful extensions: 3925
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3924
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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