Clone Name | rbart41b05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 1348 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 1289 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 1288 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 1229 Query: 451 gagggt 456 |||||| Sbjct: 1228 gagggt 1223 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 1442 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 1383 Query: 297 atga 300 |||| Sbjct: 1382 atga 1379
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 18383878 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 18383819 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 18383818 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 18383759 Query: 451 gagggt 456 |||||| Sbjct: 18383758 gagggt 18383753 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 18383972 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 18383913 Query: 297 atga 300 |||| Sbjct: 18383912 atga 18383909
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 150309 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 150250 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 150249 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 150190 Query: 451 gagggt 456 |||||| Sbjct: 150189 gagggt 150184 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 150403 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 150344 Query: 297 atga 300 |||| Sbjct: 150343 atga 150340
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 18377919 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 18377860 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 18377859 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 18377800 Query: 451 gagggt 456 |||||| Sbjct: 18377799 gagggt 18377794 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 18378013 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 18377954 Query: 297 atga 300 |||| Sbjct: 18377953 atga 18377950
>dbj|AK119216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E12, full insert sequence Length = 1478 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 862 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 803 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 802 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 743 Query: 451 gagggt 456 |||||| Sbjct: 742 gagggt 737 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 956 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 897 Query: 297 atga 300 |||| Sbjct: 896 atga 893
>dbj|AK104779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C04, full insert sequence Length = 1085 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 443 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 384 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 383 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 324 Query: 451 gagggt 456 |||||| Sbjct: 323 gagggt 318 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 478 Query: 297 atga 300 |||| Sbjct: 477 atga 474
>dbj|AK067647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O20, full insert sequence Length = 1505 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 886 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 827 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 826 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 767 Query: 451 gagggt 456 |||||| Sbjct: 766 gagggt 761 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 980 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 921 Query: 297 atga 300 |||| Sbjct: 920 atga 917
>dbj|AK067507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109I01, full insert sequence Length = 2436 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 1820 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 1761 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 1760 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 1701 Query: 451 gagggt 456 |||||| Sbjct: 1700 gagggt 1695 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 1914 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 1855 Query: 297 atga 300 |||| Sbjct: 1854 atga 1851
>dbj|AK060946.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F02, full insert sequence Length = 1085 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 331 accacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtgcagcagcagcg 390 |||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||| Sbjct: 443 accacctgccatccttcctgatctgcaggccgggcgtgtcgtcgagctgcagcagcagcg 384 Query: 391 tcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtggcggcacg 450 |||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct: 383 tcaggccgagaccatcggagtgcggcgtgatgccgatcaccttgtctgggtggcggcaag 324 Query: 451 gagggt 456 |||||| Sbjct: 323 gagggt 318 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 237 ctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttg 296 ||||||||| |||||||||||| ||||||||| |||| || ||| |||||| |||| ||| Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaaggacctcgagtatgtcggcgacattg 478 Query: 297 atga 300 |||| Sbjct: 477 atga 474
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 105 bits (53), Expect = 1e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggcagcgg 319 |||||||||||| | || ||| | ||||||| |||||||| || ||| ||||||||||| Sbjct: 11269919 gccattggtgagaacctcgagggtctcgccgatgttgatgatgaaggcacctggcagcgg 11269860 Query: 320 gttcagcgggtaccacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtg 379 || ||| | ||||| |||| || || ||||||||||| || ||||| || || || Sbjct: 11269859 ccgcaccggatgccaccggccgccgttgctaacctgcaggcccggcgtgtcatcgacttg 11269800 Query: 380 cagcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgg 439 |||||| || ||||| |||| ||||||| |||||||| ||||||||||||||| ||||| Sbjct: 11269799 cagcagtagagtcagcccgaagccgtcggagtgcggcgcgatgccgatcaccttctccgg 11269740 Query: 440 gtggcggcacggagggt 456 ||||||||| ||||||| Sbjct: 11269739 gtggcggcaaggagggt 11269723 Score = 83.8 bits (42), Expect = 5e-13 Identities = 168/210 (80%) Strand = Plus / Plus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 |||||||||| |||||||||||| | || ||| || ||||||||||| ||||||| || Sbjct: 11295657 cgctcttgtagtagccattggtgagaacctcgaggatctcgccgacgttaatgacgaagg 11295716 Query: 307 cgcctggcagcgggttcagcgggtaccacctgccgtttttcctcacctgcaggccggggg 366 | || |||||||| || || ||||| ||||| || || ||||||||||| || | Sbjct: 11295717 cacccggcagcggccgcacaggtcgccaccggccgtccttgctaacctgcaggcccggcg 11295776 Query: 367 tgtcgtccacgtgcagcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccga 426 |||| | || ||||||| ||||||||| |||| ||||||| |||||||| ||||| | Sbjct: 11295777 tgtcattgacttgcagcaacagcgtcagcccgaagccgtcggagtgcggcgcaatgccca 11295836 Query: 427 tcaccttgtccgggtggcggcacggagggt 456 ||||||| ||||| |||||||| ||||||| Sbjct: 11295837 tcaccttctccggatggcggcaaggagggt 11295866 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 381 agcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccggg 440 |||||||| || || |||| ||||||| |||||||| ||||||||||||||| |||||| Sbjct: 11257535 agcagcagagttagcccgaagccgtcggagtgcggcgagatgccgatcaccttctccggg 11257476 Query: 441 tggcggcacggagggt 456 |||||||| ||||||| Sbjct: 11257475 tggcggcagggagggt 11257460 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 386 cagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtgg 443 ||||||||| |||| |||||| |||||||| ||||||||||||||| ||||||||| Sbjct: 11238266 cagcgtcagtccgaagccgtcagagtgcggcgcgatgccgatcaccttctccgggtgg 11238209
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 105 bits (53), Expect = 1e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggcagcgg 319 |||||||||||| | || ||| | ||||||| |||||||| || ||| ||||||||||| Sbjct: 105091 gccattggtgagaacctcgagggtctcgccgatgttgatgatgaaggcacctggcagcgg 105032 Query: 320 gttcagcgggtaccacctgccgtttttcctcacctgcaggccgggggtgtcgtccacgtg 379 || ||| | ||||| |||| || || ||||||||||| || ||||| || || || Sbjct: 105031 ccgcaccggatgccaccggccgccgttgctaacctgcaggcccggcgtgtcatcgacttg 104972 Query: 380 cagcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgg 439 |||||| || ||||| |||| ||||||| |||||||| ||||||||||||||| ||||| Sbjct: 104971 cagcagtagagtcagcccgaagccgtcggagtgcggcgcgatgccgatcaccttctccgg 104912 Query: 440 gtggcggcacggagggt 456 ||||||||| ||||||| Sbjct: 104911 gtggcggcaaggagggt 104895 Score = 83.8 bits (42), Expect = 5e-13 Identities = 168/210 (80%) Strand = Plus / Plus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 |||||||||| |||||||||||| | || ||| || ||||||||||| ||||||| || Sbjct: 130829 cgctcttgtagtagccattggtgagaacctcgaggatctcgccgacgttaatgacgaagg 130888 Query: 307 cgcctggcagcgggttcagcgggtaccacctgccgtttttcctcacctgcaggccggggg 366 | || |||||||| || || ||||| ||||| || || ||||||||||| || | Sbjct: 130889 cacccggcagcggccgcacaggtcgccaccggccgtccttgctaacctgcaggcccggcg 130948 Query: 367 tgtcgtccacgtgcagcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccga 426 |||| | || ||||||| ||||||||| |||| ||||||| |||||||| ||||| | Sbjct: 130949 tgtcattgacttgcagcaacagcgtcagcccgaagccgtcggagtgcggcgcaatgccca 131008 Query: 427 tcaccttgtccgggtggcggcacggagggt 456 ||||||| ||||| |||||||| ||||||| Sbjct: 131009 tcaccttctccggatggcggcaaggagggt 131038 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Minus Query: 381 agcagcagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccggg 440 |||||||| || || |||| ||||||| |||||||| ||||||||||||||| |||||| Sbjct: 92707 agcagcagagttagcccgaagccgtcggagtgcggcgagatgccgatcaccttctccggg 92648 Query: 441 tggcggcacggagggt 456 |||||||| ||||||| Sbjct: 92647 tggcggcagggagggt 92632 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 386 cagcgtcaggccgaggccgtcgtggtgcggcgtgatgccgatcaccttgtccgggtgg 443 ||||||||| |||| |||||| |||||||| ||||||||||||||| ||||||||| Sbjct: 73438 cagcgtcagtccgaagccgtcagagtgcggcgcgatgccgatcaccttctccgggtgg 73381
>gb|AY110951.1| Zea mays CL945_1 mRNA sequence Length = 1121 Score = 103 bits (52), Expect = 5e-19 Identities = 85/96 (88%) Strand = Plus / Minus Query: 353 ctgcaggccgggggtgtcgtccacgtgcagcagcagcgtcaggccgaggccgtcgtggtg 412 |||||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 302 ctgcaggccgggcgtgtcgtccacgtgcagcagcagcgtgaggcccagcccgtccgtgtg 243 Query: 413 cggcgtgatgccgatcaccttgtccgggtggcggca 448 |||||||||||| |||||||| ||| | |||||||| Sbjct: 242 cggcgtgatgcccatcaccttctcccgctggcggca 207
>ref|NM_190055.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 886 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 827 Query: 307 cgcc 310 |||| Sbjct: 826 cgcc 823
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 41049859 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 41049918 Query: 307 cgcc 310 |||| Sbjct: 41049919 cgcc 41049922 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 4002951 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 4002990
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 86789 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 86848 Query: 307 cgcc 310 |||| Sbjct: 86849 cgcc 86852
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 247 cgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgaggg 306 ||||||||||| ||||||||||||| | || ||| ||||||||||||||| |||||||| Sbjct: 178284 cgctcttgtacctgccattggtgagcacctcgagcgtgtcgccgacgttgacgacgaggg 178343 Query: 307 cgcc 310 |||| Sbjct: 178344 cgcc 178347
>ref|NM_197730.1| Oryza sativa (japonica cultivar-group) putative ethylene-forming enzyme (OSJNBa0042H09.19), mRNA Length = 1083 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 249 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 307 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 863 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 805
>dbj|AK108419.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H11, full insert sequence Length = 1216 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 249 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 307 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 694 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 636
>dbj|AK072706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138C05, full insert sequence Length = 2491 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 249 ctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgttgatgacgagggc 307 ||||||||| |||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct: 874 ctcttgtacttgccattggtgaggatctcaagaacgtcgccgacattgacgacgagggc 816
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||||||||||||||| Sbjct: 108303 ctcttgtacttgccattggtgaggatctg 108275 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||| ||||||||||| Sbjct: 114198 ctcttgtacttgccatttgtgaggatctg 114170
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||||||||||||||| Sbjct: 21501754 ctcttgtacttgccattggtgaggatctg 21501782 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||| ||||||||||| Sbjct: 21495859 ctcttgtacttgccatttgtgaggatctg 21495887
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||||||||||||||| Sbjct: 21513417 ctcttgtacttgccattggtgaggatctg 21513445 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 ctcttgtacgtgccattggtgaggatctg 277 ||||||||| ||||||| ||||||||||| Sbjct: 21507522 ctcttgtacttgccatttgtgaggatctg 21507550
>dbj|AB189152.1| Hordeum vulgare GA3ox mRNA for gibberellin 3beta-hydroxylase, complete cds Length = 1332 Score = 48.1 bits (24), Expect = 0.025 Identities = 48/56 (85%) Strand = Plus / Minus Query: 260 gccattggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggca 315 ||||||||||||||| |||| | |||||||||||||| ||| | |||||| |||| Sbjct: 974 gccattggtgaggatgtggaagaggtcgccgacgttgacgaccatggcgcccggca 919
>gb|DQ118252.1| Triticum aestivum gibberellin 3-oxidase 2-3 (GA3ox2-3) mRNA, complete cds Length = 1602 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttga 297 |||||||||||||||| | |||||||||||||| Sbjct: 940 ttggtgaggatctggaagaggtcgccgacgttga 907
>gb|DQ118251.1| Triticum aestivum gibberellin 3-oxidase 2-2 (GA3ox2-2) mRNA, complete cds Length = 1653 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttga 297 |||||||||||||||| | |||||||||||||| Sbjct: 955 ttggtgaggatctggaagaggtcgccgacgttga 922
>gb|DQ118250.1| Triticum aestivum gibberellin 3-oxidase 2-1 (GA3ox2-1) mRNA, complete cds Length = 1473 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttga 297 |||||||||||||||| | |||||||||||||| Sbjct: 954 ttggtgaggatctggaagaggtcgccgacgttga 921
>gb|L02630.5| Xanthomonas campestris XpsE (xpsE), XpsF (xpsF), XpsG (xpsG), XpsH (xpsH), XpsI (xpsI), XpsJ (xpsJ), XpsK (xpsK), and XpsL (xpsL) genes, complete cds Length = 7813 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 373 ccacgtgcagcagcagcgtcaggccg 398 |||||||||||||||||| ||||||| Sbjct: 849 ccacgtgcagcagcagcggcaggccg 824
>ref|XM_465196.1| Oryza sativa (japonica cultivar-group), mRNA Length = 573 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatga 300 |||||||||| || ||||||||||||| |||||||| Sbjct: 140 ttggtgaggacctcaagaatgtcgccgatgttgatga 104
>ref|NM_197716.1| Oryza sativa (japonica cultivar-group) putative dioxygenase (OSJNBa0010C11.16), mRNA Length = 1053 Score = 42.1 bits (21), Expect = 1.6 Identities = 57/69 (82%) Strand = Plus / Minus Query: 235 ccctgtgctcggcgctcttgtacgtgccattggtgaggatctggagaatgtcgccgacgt 294 |||||||||| ||||| ||||| | |||||| | || |||| || ||||||||||||| Sbjct: 847 ccctgtgctcaacgctcctgtacctcccattgctcagaatctcaagcatgtcgccgacgt 788 Query: 295 tgatgacga 303 ||| ||||| Sbjct: 787 tgacgacga 779
>ref|XM_425382.1| PREDICTED: Gallus gallus similar to 6330406P08Rik protein (LOC427811), mRNA Length = 1152 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 atccacgaaccttgtcccttc 79 ||||||||||||||||||||| Sbjct: 204 atccacgaaccttgtcccttc 184
>emb|CR648949.2|CNS0EZP7 Tetraodon nigroviridis full-length cDNA Length = 1157 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 392 caggccgaggccgtcgtggtgcggc 416 |||||||||||||| |||||||||| Sbjct: 628 caggccgaggccgtggtggtgcggc 652
>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence Length = 214250 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 cattggtgaggatctggagaa 282 ||||||||||||||||||||| Sbjct: 55988 cattggtgaggatctggagaa 56008
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatga 300 |||||||||| || ||||||||||||| |||||||| Sbjct: 12229466 ttggtgaggacctcaagaatgtcgccgatgttgatga 12229502
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 gctccgggagcggcttcacca 168 ||||||||||||||||||||| Sbjct: 806886 gctccgggagcggcttcacca 806866
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatga 300 |||||||||| || ||||||||||||| |||||||| Sbjct: 52927 ttggtgaggacctcaagaatgtcgccgatgttgatga 52963
>gb|AY804252.1| Musa acuminata ACC oxidase (MAO3) gene, complete cds Length = 3718 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 2746 cgctcttgtacttgccattggtga 2723
>ref|NM_191620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1122 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>ref|XM_524885.1| PREDICTED: Pan troglodytes LOC469502 (LOC469502), mRNA Length = 987 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 83 tgcagaagcagcgtcaggccgagg 106
>gb|AY726597.1| Homo sapiens clone MO-27 mRNA sequence Length = 2379 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 22 tgcagaagcagcgtcaggccgagg 45
>gb|AY551431.1| Hordeum vulgare subsp. vulgare GA 3-oxidase 2 (GA3ox2) mRNA, complete cds Length = 1594 Score = 40.1 bits (20), Expect = 6.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacgagggcgcctggca 315 ||||||||||| |||| | |||||||||||||| ||| | |||||| |||| Sbjct: 964 ttggtgaggatgtggaagaggtcgccgacgttgacgaccatggcgcccggca 913
>gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, complete sequence Length = 205291 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 149931 tgcagaagcagcgtcaggccgagg 149954
>gb|AY294419.1| Anas platyrhynchos MHC class I antigen alpha chain (Anpl-U) mRNA, Anpl-U*05 allele, complete cds Length = 1955 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 cagcagcagcgtcaggccgaggcc 403 |||||||||| ||||||||||||| Sbjct: 57 cagcagcagcctcaggccgaggcc 34
>ref|XM_880751.1| PREDICTED: Bos taurus similar to transducer of regulated cAMP response element-binding protein (CREB) 2, transcript variant 3 (LOC540959), mRNA Length = 904 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 207 tgcagaagcagcgtcaggccgagg 230
>ref|XM_613875.2| PREDICTED: Bos taurus similar to transducer of regulated cAMP response element-binding protein (CREB) 2, transcript variant 1 (LOC540959), mRNA Length = 2635 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 207 tgcagaagcagcgtcaggccgagg 230
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gcctggcagcgggttcagcg 327 |||||||||||||||||||| Sbjct: 364519 gcctggcagcgggttcagcg 364500
>gb|DQ185515.1| Rattus norvegicus transducer of regulated cAMP response element-binding protein 2 (Torc2) mRNA, complete cds Length = 2076 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 83 tgcagaagcagcgtcaggccgagg 106
>ref|XR_003034.1| PREDICTED: Mus musculus similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) (LOC383644), mRNA Length = 983 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttccctcctcgaccaaggtt 37 |||||||||||||||||||| Sbjct: 530 ttccctcctcgaccaaggtt 511
>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence Length = 211640 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 aacacaagcattctgaaacatcac 199 |||||||||||||||| ||||||| Sbjct: 25333 aacacaagcattctgacacatcac 25310
>ref|XM_532851.2| PREDICTED: Canis familiaris similar to N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase precursor (Glycosylasparaginase) (Aspartylglucosaminidase) (N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase) (AGA) (LOC475638), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gcagcagcagcgtcaggccg 398 |||||||||||||||||||| Sbjct: 133 gcagcagcagcgtcaggccg 114
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tctcgacgtccggcagcacc 236 |||||||||||||||||||| Sbjct: 111423 tctcgacgtccggcagcacc 111442
>gb|AC123557.4| Mus musculus BAC clone RP23-183P22 from 1, complete sequence Length = 198349 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttccctcctcgaccaaggtt 37 |||||||||||||||||||| Sbjct: 44647 ttccctcctcgaccaaggtt 44666
>ref|NM_001033895.1| Rattus norvegicus CREB regulated transcription coactivator 2 (Crtc2), mRNA Length = 2076 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 83 tgcagaagcagcgtcaggccgagg 106
>gb|AY360172.1| Homo sapiens transducer of regulated CREB protein 2 (TORC2) mRNA, complete cds Length = 2359 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 213 tgcagaagcagcgtcaggccgagg 236
>gb|U86045.1|MSU86045 Musa sp. 1-aminocyclopropane-1-carboxylate oxidase (MAO2) gene, complete cds Length = 3718 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 2746 cgctcttgtacttgccattggtga 2723
>gb|BC086958.1| Homo sapiens cDNA clone IMAGE:5210435, **** WARNING: chimeric clone **** Length = 4419 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 1943 tgcagaagcagcgtcaggccgagg 1966
>ref|NM_181715.1| Homo sapiens CREB regulated transcription coactivator 2 (CRTC2), mRNA Length = 2598 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 153 tgcagaagcagcgtcaggccgagg 176
>emb|AL358472.54| Human DNA sequence from clone RP11-422P24 on chromosome 1 Contains the 5' UTR of the gene for transcription repressor p66 beta component of the MeCP1 complex (P66beta), the KIAA0476 gene for a novel protein, the gene for transducer of regulated cAMP response element-binding protein (CREB) 2 (TORC2), the SLC39A1 gene for solute carrier family 39 (zinc transporter), member 1, the CREB3L4 gene for cAMP responsive element binding protein 3-like 4, the JTB gene for jumping translocation breakpoint, the RAB13 gene for RAB13, member RAS oncogene family, the RPS27 gene for ribosomal protein S27 (metallopanstimulin 1), the 3' end of the gene for nuclear pore membrane glycoprotein 210-like (LOC91181), a ribosomal protein S7 (RPS7) pseudogene and a CpG island, complete sequence Length = 175827 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 39041 tgcagaagcagcgtcaggccgagg 39018
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cagcagcagcgtcaggccga 399 |||||||||||||||||||| Sbjct: 196781 cagcagcagcgtcaggccga 196800
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cagcagcagcgtcaggccga 399 |||||||||||||||||||| Sbjct: 133270 cagcagcagcgtcaggccga 133289
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 cagcagcagcgtcaggccga 399 |||||||||||||||||||| Sbjct: 295256 cagcagcagcgtcaggccga 295237
>emb|AJ223232.1|MAAJ3232 Musa acuminata ACO1 gene Length = 1593 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 1203 cgctcttgtacttgccattggtga 1180
>dbj|AK096382.1| Homo sapiens cDNA FLJ39063 fis, clone NT2RP7014348 Length = 2263 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 150 tgcagaagcagcgtcaggccgagg 173
>gb|AC096622.14| Mus musculus strain 129/SvJ clone mgs1-182e11, complete sequence Length = 131919 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 16697 tgcagaagcagcgtcaggccgagg 16674
>gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, complete sequence Length = 173960 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 attggtgaggatctggagaa 282 |||||||||||||||||||| Sbjct: 158790 attggtgaggatctggagaa 158771
>dbj|AK156192.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830011E10 product:hypothetical Proline-rich region profile/Serine-rich region profile containing protein, full insert sequence Length = 2600 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 187 tgcagaagcagcgtcaggccgagg 210
>dbj|AK169944.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630005C13 product:hypothetical Proline-rich region profile/Serine-rich region profile containing protein, full insert sequence Length = 2323 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 207 tgcagaagcagcgtcaggccgagg 230
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tggtgcggcgtgatgccgat 427 |||||||||||||||||||| Sbjct: 807195 tggtgcggcgtgatgccgat 807214
>dbj|AK172084.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830035H11 product:hypothetical protein, full insert sequence Length = 928 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 166 tgcagaagcagcgtcaggccgagg 189
>dbj|AK079382.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630054L03 product:RIKEN cDNA 4632407F12 gene, full insert sequence Length = 2970 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 166 tgcagaagcagcgtcaggccgagg 189
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgacgttgatgacgagggcg 308 |||||||||||||||||||| Sbjct: 24691685 cgacgttgatgacgagggcg 24691704
>emb|AJ505611.2|MAC505611 Musa acuminata mRNA for putative aminocyclopropane carboxylate oxidase (aco gene), cultivar Ney Poovan Length = 1181 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 768 cgctcttgtacttgccattggtga 745
>gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complete sequence Length = 90527 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 attggtgaggatctggagaa 282 |||||||||||||||||||| Sbjct: 64756 attggtgaggatctggagaa 64775
>dbj|AK223559.1| Homo sapiens mRNA for hypothetical protein LOC200186 variant, clone: FCC127E09 Length = 2293 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 195 tgcagaagcagcgtcaggccgagg 218
>gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone mgs1-30a13, complete sequence Length = 196824 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 120198 tgcagaagcagcgtcaggccgagg 120221
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 124855 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 124894
>ref|NM_028881.1| Mus musculus CREB regulated transcription coactivator 2 (Crtc2), mRNA Length = 2675 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 203 tgcagaagcagcgtcaggccgagg 226
>emb|AJ604546.1| Musa acuminata mRNA for 1-aminocyclopropane-1-carboxylate oxidase (aco gene), cultivar Robusta Length = 1171 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 744 cgctcttgtacttgccattggtga 721
>emb|AJ505610.1|MIN505610 Mangifera indica partial mRNA for putative aminocyclopropane carboxylate oxidase (aco gene), cultivar Alphonso Length = 806 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 583 cgctcttgtacttgccattggtga 560
>gb|BC023091.1| Mus musculus CREB regulated transcription coactivator 2, mRNA (cDNA clone MGC:28395 IMAGE:4023064), complete cds Length = 2226 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 148 tgcagaagcagcgtcaggccgagg 171
>gb|BC032183.1| Mus musculus CREB regulated transcription coactivator 2, mRNA (cDNA clone MGC:36402 IMAGE:5310152), complete cds Length = 2643 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 213 tgcagaagcagcgtcaggccgagg 236
>gb|BC023831.1| Mus musculus CREB regulated transcription coactivator 2, mRNA (cDNA clone MGC:36615 IMAGE:5345301), complete cds Length = 2675 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 203 tgcagaagcagcgtcaggccgagg 226
>gb|BC033300.1| Mus musculus CREB regulated transcription coactivator 2, mRNA (cDNA clone MGC:19311 IMAGE:4166411), complete cds Length = 2641 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 203 tgcagaagcagcgtcaggccgagg 226
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 agcagcagcgtcaggccgaggccg 404 ||||||||||||||||| |||||| Sbjct: 2626448 agcagcagcgtcaggcccaggccg 2626425
>gb|AF081917.1|AF081917 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1209 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 740 cgctcttgtacttgccattggtga 717
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgacgttgatgacgagggcg 308 |||||||||||||||||||| Sbjct: 24619891 cgacgttgatgacgagggcg 24619910
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgacgttgatgacgagggcg 308 |||||||||||||||||||| Sbjct: 136551 cgacgttgatgacgagggcg 136570
>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete sequence Length = 188228 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 aacacaagcattctgaaacatcac 199 |||||||||||||||| ||||||| Sbjct: 132902 aacacaagcattctgacacatcac 132925
>gb|BC053562.1| Homo sapiens CREB regulated transcription coactivator 2, mRNA (cDNA clone MGC:61711 IMAGE:6188068), complete cds Length = 2598 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 tgcagcagcagcgtcaggccgagg 401 ||||| |||||||||||||||||| Sbjct: 153 tgcagaagcagcgtcaggccgagg 176
>gb|U80233.1|MSU80233 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1171 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 728 cgctcttgtacttgccattggtga 705
>gb|U55770.1|MAU55770 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1169 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 726 cgctcttgtacttgccattggtga 703
>emb|X91076.1|MIDNAACCO M.acuminata acco1 gene Length = 2496 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgctcttgtacgtgccattggtga 270 ||||||||||| |||||||||||| Sbjct: 1868 cgctcttgtacttgccattggtga 1845
>dbj|AB054083.1| Oryza sativa gene for GA 3beta-hydroxylase, complete cds Length = 1122 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>dbj|AB056519.1| Oryza sativa (japonica cultivar-group) D18 mRNA for GA 3beta-hydroxylase, complete cds Length = 1122 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 830 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 791
>dbj|AB056518.1| Oryza sativa d18-dy mRNA for GA 3beta-hydroxylase, complete cds Length = 1113 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 821 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 782
>dbj|AB056517.1| Oryza sativa d18-Id18h mRNA for GA 3beta-hydroxylase, complete cds Length = 1121 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 264 ttggtgaggatctggagaatgtcgccgacgttgatgacga 303 ||||||||||| |||| | |||||||||||||| ||||| Sbjct: 829 ttggtgaggatgtggaagaggtcgccgacgttgacgacga 790 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,206,259 Number of Sequences: 3902068 Number of extensions: 3206259 Number of successful extensions: 67359 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66609 Number of HSP's gapped (non-prelim): 750 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)