ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41b03 |
|---|---|
| Clone Library Name | barley_pub |
>ATPBM_MAIZE (P19023) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 553 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 100 RPRAPGHRPSPRGF 141 RPRAP HRPSP G+ Sbjct: 26 RPRAPPHRPSPAGY 39
>EX7L_CAUCR (Q9A649) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 505 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 257 GHDYFTAADDRGVRRAVTLFARVKGLTVRP-HGQHWILSPK 138 GH Y T DD+ V V+GL VRP HG I++ K Sbjct: 49 GHVYLTIKDDKSAIDGVVWKGNVRGLGVRPEHGLEVIVTGK 89
>RL22_MYCTU (P61181) 50S ribosomal protein L22| Length = 197 Score = 29.6 bits (65), Expect = 4.0 Identities = 34/102 (33%), Positives = 43/102 (42%) Frame = +1 Query: 100 RPRAPGHRPSPRGFGDRIQCWPWGRTVRPLTLAKSVTARRTPRSSAAVK*SWPNMTPPGR 279 RPRA G R I R + AKS ARRT S AA K Sbjct: 96 RPRAQGRAFRIRRRTSHITVVVESRPAKDQRSAKSSRARRTEASKAASKVG--------- 146 Query: 280 STAHARLMSAHAEWKSWPASTSMRSA*TPHRHSAPSVDAVEK 405 +TA A+ +A A K PAS+ ++ TP + AP+ A K Sbjct: 147 ATAPAKKAAAKAPAKKAPASSGVKK--TPAK-KAPAKKAPAK 185
>RL22_MYCBO (P61180) 50S ribosomal protein L22| Length = 197 Score = 29.6 bits (65), Expect = 4.0 Identities = 34/102 (33%), Positives = 43/102 (42%) Frame = +1 Query: 100 RPRAPGHRPSPRGFGDRIQCWPWGRTVRPLTLAKSVTARRTPRSSAAVK*SWPNMTPPGR 279 RPRA G R I R + AKS ARRT S AA K Sbjct: 96 RPRAQGRAFRIRRRTSHITVVVESRPAKDQRSAKSSRARRTEASKAASKVG--------- 146 Query: 280 STAHARLMSAHAEWKSWPASTSMRSA*TPHRHSAPSVDAVEK 405 +TA A+ +A A K PAS+ ++ TP + AP+ A K Sbjct: 147 ATAPAKKAAAKAPAKKAPASSGVKK--TPAK-KAPAKKAPAK 185
>PYRG_NEUCR (Q7RZV2) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 568 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 11/51 (21%) Frame = -3 Query: 371 RWGVYADLIEVDAGH-----------DFHSAWADINLAWAVLRPGGVMFGH 252 R G +LI VD+ H +H AW D+ +A +L PGG FGH Sbjct: 319 RCGRKLNLIWVDSEHLEEKTQKEDPTKYHKAWHDVCVAKGILVPGG--FGH 367
>ATG4_CRYNE (Q5K9L9) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related| protein 4) Length = 1193 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +1 Query: 190 TLAKSVTARRTPRSSAAVK*SWPNMTPPGRSTAHARLMSAHAEWKSWPASTSMRSA*TPH 369 T S+ +RR+PR+S AH+R S ++ SWPA S+RS+ T H Sbjct: 188 TRQNSIQSRRSPRTSFG--------------QAHSRRASQDSQM-SWPAPRSIRSSTTSH 232 Query: 370 RHSA 381 S+ Sbjct: 233 DPSS 236
>GLI3_CHICK (P55879) Zinc finger protein GLI3 (Fragment)| Length = 663 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 87 DGCSCLSPSPAGRDTHSLQPSSGNRGI 7 D CS ++P+P GR+T L P SGN I Sbjct: 542 DSCSWVNPAPQGRNT-KLPPISGNGSI 567
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +1 Query: 259 NMTPPGRSTAHARLMSAHAEWKSWPASTSMRSA*TP 366 N +PP S A S HA KSWP S SA P Sbjct: 3594 NDSPPPPSAAAPSSASPHASRKSWPQVVSRASAAKP 3629
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 259 NMTPPGRSTAHARLMSAHAEWKSWPASTSMRSA*TP 366 N +PP S A + S HA KSWP S SA P Sbjct: 3617 NDSPPPPSAAPSSSASPHASRKSWPPVGSRASAAKP 3652
>PUR9_RHILO (Q98ES7) Bifunctional purine biosynthesis protein purH [Includes:| Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] Length = 538 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 293 AWAVLRPGGVMFGHDYFTAADDRGVRRAVT 204 A AV++PGG M D AAD+ G+ T Sbjct: 502 ATAVIQPGGSMNDKDVIAAADEHGIAMVFT 531
>EC_MAIZE (P43401) EC protein homolog (Zinc-metallothionein class II)| Length = 76 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = -2 Query: 93 CVDGCSCLSPSPAGRDTHSLQPSSGNR 13 C D C C P P G+D S G R Sbjct: 2 CDDKCGCAVPCPGGKDCRCTSGSGGQR 28
>RIN2_MOUSE (Q9D684) Ras and Rab interactor 2 (Ras interaction/interference| protein 2) Length = 903 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/87 (26%), Positives = 35/87 (40%) Frame = +1 Query: 97 ERPRAPGHRPSPRGFGDRIQCWPWGRTVRPLTLAKSVTARRTPRSSAAVK*SWPNMTPPG 276 ERPR+P RP P + + P P T + T + + A+ + P PP Sbjct: 302 ERPRSPPPRPPPPAI-NSLHTSPGLSRTEPQT-SMPETVNHSKHGNVALLGTKPTPIPPP 359 Query: 277 RSTAHARLMSAHAEWKSWPASTSMRSA 357 R A + A + K+ A RS+ Sbjct: 360 RLKKQASFLEAESSAKTLTARRPSRSS 386
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Frame = -2 Query: 186 GPHR------PPPWPALDPIPEAAXXXXXXXXXXXXRCVDGCSCLSPSPAG 52 GPH PP PAL P+P A GCS S S G Sbjct: 412 GPHSCVFADAPPALPALPPLPPRAPSSRPGEGAPAAAAAAGCSASSASSPG 462 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,912,715 Number of Sequences: 219361 Number of extensions: 1027410 Number of successful extensions: 3571 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3568 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
