ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 387 e-104
2dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic D... 387 e-104
3dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic D... 387 e-104
4dbj|AK111425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
5dbj|AK072714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 48 0.026
7emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.40
8gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.6
9emb|BX571964.1| Rhodopseudomonas palustris CGA009 plasmid pRPA 42 1.6
10gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.6
11ref|XM_481698.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
12ref|XM_482498.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
13ref|XM_474283.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
14gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 6.3
15gb|DQ160293.1| Synthetic construct cell surface glycoprotein BM8... 40 6.3
16ref|XM_420068.1| PREDICTED: Gallus gallus similar to seven trans... 40 6.3
17ref|XM_582026.2| PREDICTED: Bos taurus similar to ryanodine rece... 40 6.3
18gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.3
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
20ref|XM_883465.1| Leishmania major strain Friedlin serine-threoni... 40 6.3
21emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes 40 6.3
22emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 6.3
23emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 6.3
24emb|CR726667.2|CNS0GNN5 Tetraodon nigroviridis full-length cDNA 40 6.3
25ref|XM_848125.1| PREDICTED: Canis familiaris similar to Protein ... 40 6.3
26gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.3
27gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.3
28emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.3
29emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 6.3
30emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 6.3
31emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 6.3
32emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
33gb|AE005929.1| Caulobacter crescentus CB15 section 255 of 359 of... 40 6.3
34gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.3
35dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 40 6.3
39gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 6.3
40dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
41dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
42emb|AJ315500.2|MFO315500 Mycobacterium fortuitum insertion seque... 40 6.3
43dbj|AK103459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
44emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.3
45gb|AF009336.1|AF009336 Streptomyces coelicolor lipase (lipA), an... 40 6.3
46emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
47emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
48gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.3
49gb|M21474.1|HSBGPI Bovine herpesvirus type 1 glycoprotein 1 gene... 40 6.3 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  387 bits (195), Expect = e-104
 Identities = 264/287 (91%)
 Strand = Plus / Plus

                                                                            
Query: 134      gcggcttcggggataggatccagtgctggccatgggggcggacggtgaggcccttgaccc 193
                ||||||||||||| |||| |||||||||||| || || ||||||||||||||||| ||||
Sbjct: 19963855 gcggcttcggggagaggacccagtgctggccgtgcggccggacggtgaggcccttcaccc 19963914

                                                                            
Query: 194      tggcgaaaagcgtgacggcgcgccggacgccgcggtcgtcggcggccgtgaagtagtcgt 253
                ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 19963915 tggcgaacagcgtcacggctcgccggacgccgcggtcgtcggcggcggtgaagtagtcgt 19963974

                                                                            
Query: 254      ggccgaacatgacgccgccggggcgcagcacggcccatgccaggttgatgtccgcccacg 313
                ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 19963975 ggccgaacatgacgccgccggggcggagcacggcccaggcgaggttgatgtccgcccacg 19964034

                                                                            
Query: 314      ccgagtggaagtcgtggccggcgtccacctcgatgaggtccgcgtagacgccccaccggc 373
                |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 19964035 ccgagtggaagtcgtggccggcgtccacctcgatgaggtcggcgtagacgccccagtggc 19964094

                                                               
Query: 374      acagcgccccgagcgtggacgccgtggagaagggcagcggcagcacc 420
                | |||||  |||||| ||||||||| |||||||| ||||| ||||||
Sbjct: 19964095 agagcgcggcgagcgcggacgccgtcgagaaggggagcgggagcacc 19964141
to top
>dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
             fosmid clone:OSJNOa211K08
          Length = 41043

 Score =  387 bits (195), Expect = e-104
 Identities = 264/287 (91%)
 Strand = Plus / Plus

                                                                         
Query: 134   gcggcttcggggataggatccagtgctggccatgggggcggacggtgaggcccttgaccc 193
             ||||||||||||| |||| |||||||||||| || || ||||||||||||||||| ||||
Sbjct: 20494 gcggcttcggggagaggacccagtgctggccgtgcggccggacggtgaggcccttcaccc 20553

                                                                         
Query: 194   tggcgaaaagcgtgacggcgcgccggacgccgcggtcgtcggcggccgtgaagtagtcgt 253
             ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 20554 tggcgaacagcgtcacggctcgccggacgccgcggtcgtcggcggcggtgaagtagtcgt 20613

                                                                         
Query: 254   ggccgaacatgacgccgccggggcgcagcacggcccatgccaggttgatgtccgcccacg 313
             ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 20614 ggccgaacatgacgccgccggggcggagcacggcccaggcgaggttgatgtccgcccacg 20673

                                                                         
Query: 314   ccgagtggaagtcgtggccggcgtccacctcgatgaggtccgcgtagacgccccaccggc 373
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 20674 ccgagtggaagtcgtggccggcgtccacctcgatgaggtcggcgtagacgccccagtggc 20733

                                                            
Query: 374   acagcgccccgagcgtggacgccgtggagaagggcagcggcagcacc 420
             | |||||  |||||| ||||||||| |||||||| ||||| ||||||
Sbjct: 20734 agagcgcggcgagcgcggacgccgtcgagaaggggagcgggagcacc 20780
to top
>dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0498F03
          Length = 54025

 Score =  387 bits (195), Expect = e-104
 Identities = 264/287 (91%)
 Strand = Plus / Plus

                                                                         
Query: 134   gcggcttcggggataggatccagtgctggccatgggggcggacggtgaggcccttgaccc 193
             ||||||||||||| |||| |||||||||||| || || ||||||||||||||||| ||||
Sbjct: 38003 gcggcttcggggagaggacccagtgctggccgtgcggccggacggtgaggcccttcaccc 38062

                                                                         
Query: 194   tggcgaaaagcgtgacggcgcgccggacgccgcggtcgtcggcggccgtgaagtagtcgt 253
             ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 38063 tggcgaacagcgtcacggctcgccggacgccgcggtcgtcggcggcggtgaagtagtcgt 38122

                                                                         
Query: 254   ggccgaacatgacgccgccggggcgcagcacggcccatgccaggttgatgtccgcccacg 313
             ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 38123 ggccgaacatgacgccgccggggcggagcacggcccaggcgaggttgatgtccgcccacg 38182

                                                                         
Query: 314   ccgagtggaagtcgtggccggcgtccacctcgatgaggtccgcgtagacgccccaccggc 373
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 38183 ccgagtggaagtcgtggccggcgtccacctcgatgaggtcggcgtagacgccccagtggc 38242

                                                            
Query: 374   acagcgccccgagcgtggacgccgtggagaagggcagcggcagcacc 420
             | |||||  |||||| ||||||||| |||||||| ||||| ||||||
Sbjct: 38243 agagcgcggcgagcgcggacgccgtcgagaaggggagcgggagcacc 38289
to top
>dbj|AK111425.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H01, full
           insert sequence
          Length = 1404

 Score =  387 bits (195), Expect = e-104
 Identities = 264/287 (91%)
 Strand = Plus / Plus

                                                                       
Query: 134 gcggcttcggggataggatccagtgctggccatgggggcggacggtgaggcccttgaccc 193
           ||||||||||||| |||| |||||||||||| || || ||||||||||||||||| ||||
Sbjct: 152 gcggcttcggggagaggacccagtgctggccgtgcggccggacggtgaggcccttcaccc 211

                                                                       
Query: 194 tggcgaaaagcgtgacggcgcgccggacgccgcggtcgtcggcggccgtgaagtagtcgt 253
           ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 tggcgaacagcgtcacggctcgccggacgccgcggtcgtcggcggcggtgaagtagtcgt 271

                                                                       
Query: 254 ggccgaacatgacgccgccggggcgcagcacggcccatgccaggttgatgtccgcccacg 313
           ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 272 ggccgaacatgacgccgccggggcggagcacggcccaggcgaggttgatgtccgcccacg 331

                                                                       
Query: 314 ccgagtggaagtcgtggccggcgtccacctcgatgaggtccgcgtagacgccccaccggc 373
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 332 ccgagtggaagtcgtggccggcgtccacctcgatgaggtcggcgtagacgccccagtggc 391

                                                          
Query: 374 acagcgccccgagcgtggacgccgtggagaagggcagcggcagcacc 420
           | |||||  |||||| ||||||||| |||||||| ||||| ||||||
Sbjct: 392 agagcgcggcgagcgcggacgccgtcgagaaggggagcgggagcacc 438
to top
>dbj|AK072714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142B15, full
            insert sequence
          Length = 1302

 Score =  387 bits (195), Expect = e-104
 Identities = 264/287 (91%)
 Strand = Plus / Minus

                                                                        
Query: 134  gcggcttcggggataggatccagtgctggccatgggggcggacggtgaggcccttgaccc 193
            ||||||||||||| |||| |||||||||||| || || ||||||||||||||||| ||||
Sbjct: 1044 gcggcttcggggagaggacccagtgctggccgtgcggccggacggtgaggcccttcaccc 985

                                                                        
Query: 194  tggcgaaaagcgtgacggcgcgccggacgccgcggtcgtcggcggccgtgaagtagtcgt 253
            ||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 984  tggcgaacagcgtcacggctcgccggacgccgcggtcgtcggcggcggtgaagtagtcgt 925

                                                                        
Query: 254  ggccgaacatgacgccgccggggcgcagcacggcccatgccaggttgatgtccgcccacg 313
            ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 924  ggccgaacatgacgccgccggggcggagcacggcccaggcgaggttgatgtccgcccacg 865

                                                                        
Query: 314  ccgagtggaagtcgtggccggcgtccacctcgatgaggtccgcgtagacgccccaccggc 373
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 864  ccgagtggaagtcgtggccggcgtccacctcgatgaggtcggcgtagacgccccagtggc 805

                                                           
Query: 374  acagcgccccgagcgtggacgccgtggagaagggcagcggcagcacc 420
            | |||||  |||||| ||||||||| |||||||| ||||| ||||||
Sbjct: 804  agagcgcggcgagcgcggacgccgtcgagaaggggagcgggagcacc 758
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 416     gcaccgtggccgcggcctcgggccccgcggcg 447
               ||||| ||||||||||||||||| ||||||||
Sbjct: 1423097 gcaccatggccgcggcctcgggcgccgcggcg 1423128
to top
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 209    cggcgcgccggacgccgcggtcgtcg 234
              ||||||||||||||||||| ||||||
Sbjct: 211463 cggcgcgccggacgccgcgatcgtcg 211488
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 254     ggccgaacatgacgccgccggggcgcagc 282
               ||||||||||| |||||||| ||||||||
Sbjct: 3328765 ggccgaacatgccgccgccgcggcgcagc 3328737



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     ggacgccgcggtcgtcggcg 237
               ||||||||||||||||||||
Sbjct: 2943929 ggacgccgcggtcgtcggcg 2943910



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 266     cgccgccggggcgcagcacg 285
               ||||||||||||||||||||
Sbjct: 1681232 cgccgccggggcgcagcacg 1681251
to top
>emb|BX571964.1| Rhodopseudomonas palustris CGA009 plasmid pRPA
          Length = 8427

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 410  gcggcagcaccgtggccgcgg 430
            |||||||||||||||||||||
Sbjct: 7773 gcggcagcaccgtggccgcgg 7753
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    ccgccggcgacggcgacaagc 74
             |||||||||||||||||||||
Sbjct: 57083 ccgccggcgacggcgacaagc 57063
to top
>ref|XM_481698.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 441

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 gacgccgtggagaagggcagcggc 414
           |||||||||||| |||||||||||
Sbjct: 98  gacgccgtggagcagggcagcggc 75
to top
>ref|XM_482498.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1868

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 acgccgccggggcgcagcacggcc 288
           ||||||||| ||||||||||||||
Sbjct: 474 acgccgccgcggcgcagcacggcc 497
to top
>ref|XM_474283.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 391 gacgccgtggagaagggcagcggc 414
           |||||||||||| |||||||||||
Sbjct: 310 gacgccgtggaggagggcagcggc 333
to top
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   cgccgccggggcgcagcacg 285
             ||||||||||||||||||||
Sbjct: 64525 cgccgccggggcgcagcacg 64506
to top
>gb|DQ160293.1| Synthetic construct cell surface glycoprotein BM86 (BM86) mRNA,
           complete cds
          Length = 1953

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 408 cagcggcagcaccgtggccg 427
           ||||||||||||||||||||
Sbjct: 702 cagcggcagcaccgtggccg 721
to top
>ref|XM_420068.1| PREDICTED: Gallus gallus similar to seven transmembrane helix
           receptor (LOC422063), mRNA
          Length = 7653

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 375 cagcgccccgagcgtggacgccgt 398
           |||||||||||||| |||||||||
Sbjct: 799 cagcgccccgagcggggacgccgt 822
to top
>ref|XM_582026.2| PREDICTED: Bos taurus similar to ryanodine receptor 1, skeletal
            muscle (LOC505697), mRNA
          Length = 9500

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 424  gccgcggcctcgggccccgcggcg 447
            |||||| |||||||||||||||||
Sbjct: 7106 gccgcgccctcgggccccgcggcg 7083
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    cgccgcggtcgtcggcggcc 240
              ||||||||||||||||||||
Sbjct: 403396 cgccgcggtcgtcggcggcc 403377
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       ccgccggcgacggcgacaag 73
                ||||||||||||||||||||
Sbjct: 28708513 ccgccggcgacggcgacaag 28708532
to top
>ref|XM_883465.1| Leishmania major strain Friedlin serine-threonine protein kinase
            (P1105.06) partial mRNA
          Length = 3711

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 264  gacgccgccggggcgcagcacggc 287
            |||||||||||||||| |||||||
Sbjct: 2734 gacgccgccggggcgccgcacggc 2757
to top
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes
          Length = 37000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ggcccgccggcgacggcgac 70
             ||||||||||||||||||||
Sbjct: 26146 ggcccgccggcgacggcgac 26165
to top
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ggcccgccggcgacggcgac 70
             ||||||||||||||||||||
Sbjct: 56946 ggcccgccggcgacggcgac 56965
to top
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 264   gacgccgccggggcgcagcacggc 287
             |||||||||||||||| |||||||
Sbjct: 44819 gacgccgccggggcgccgcacggc 44796
to top
>emb|CR726667.2|CNS0GNN5 Tetraodon nigroviridis full-length cDNA
          Length = 1283

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 tggacgccgtggagaagggc 408
           ||||||||||||||||||||
Sbjct: 342 tggacgccgtggagaagggc 361
to top
>ref|XM_848125.1| PREDICTED: Canis familiaris similar to Protein KIAA0934 (LOC610591),
            mRNA
          Length = 5061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  gccggggcgcagcacggccc 289
            ||||||||||||||||||||
Sbjct: 4466 gccggggcgcagcacggccc 4447
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 407     gcagcggcagcaccgtggcc 426
               ||||||||||||||||||||
Sbjct: 2798013 gcagcggcagcaccgtggcc 2798032
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 268     ccgccggggcgcagcacggc 287
               ||||||||||||||||||||
Sbjct: 1944849 ccgccggggcgcagcacggc 1944830
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     cgccgcggtcgtcggcggcc 240
               ||||||||||||||||||||
Sbjct: 1722869 cgccgcggtcgtcggcggcc 1722850
to top
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 212    cgcgccggacgccgcggtcgtcggcggccgtg 243
              ||||||| || ||| |||||||||||||||||
Sbjct: 242957 cgcgccgcaccccgaggtcgtcggcggccgtg 242988
to top
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    ggacgccgtggagaagggca 409
              ||||||||||||||||||||
Sbjct: 116237 ggacgccgtggagaagggca 116256
to top
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ggcccgccggcgacggcgac 70
              ||||||||||||||||||||
Sbjct: 162553 ggcccgccggcgacggcgac 162572
to top
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   gacgccgtggagaagggcagcggc 414
             |||||||||||| |||||||||||
Sbjct: 88238 gacgccgtggaggagggcagcggc 88261
to top
>gb|AE005929.1| Caulobacter crescentus CB15 section 255 of 359 of the complete genome
          Length = 13698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   gagcgcctggtcaccggccgtcgc 130
             ||||||| ||||||||||||||||
Sbjct: 12910 gagcgccgggtcaccggccgtcgc 12933
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     cgccgcggtcgtcggcggcc 240
               ||||||||||||||||||||
Sbjct: 1061042 cgccgcggtcgtcggcggcc 1061061
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 391      gacgccgtggagaagggcagcggc 414
                |||||||||||| |||||||||||
Sbjct: 34176856 gacgccgtggaggagggcagcggc 34176879
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 265      acgccgccggggcgcagcacggcc 288
                ||||||||| ||||||||||||||
Sbjct: 20619695 acgccgccgcggcgcagcacggcc 20619672



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 391      gacgccgtggagaagggcagcggc 414
                |||||||||||| |||||||||||
Sbjct: 14784693 gacgccgtggagcagggcagcggc 14784670
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       ccgccggcgacggcgacaag 73
                ||||||||||||||||||||
Sbjct: 28799837 ccgccggcgacggcgacaag 28799856
to top
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ccgccggcgacggcgacaag 73
             ||||||||||||||||||||
Sbjct: 15494 ccgccggcgacggcgacaag 15513
to top
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cgtggccgaacatgacgccgccggggcg 278
             ||||||||| ||||||||||| ||||||
Sbjct: 43782 cgtggccgaccatgacgccgcgggggcg 43755
to top
>dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0030G18
          Length = 167557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 391   gacgccgtggagaagggcagcggc 414
             |||||||||||| |||||||||||
Sbjct: 76780 gacgccgtggagcagggcagcggc 76757
to top
>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1663_D06
          Length = 139103

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 265   acgccgccggggcgcagcacggcc 288
             ||||||||| ||||||||||||||
Sbjct: 94067 acgccgccgcggcgcagcacggcc 94044
to top
>emb|AJ315500.2|MFO315500 Mycobacterium fortuitum insertion sequence IS220
          Length = 3268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  cagcaccgtggccgcggcct 433
            ||||||||||||||||||||
Sbjct: 2440 cagcaccgtggccgcggcct 2459
to top
>dbj|AK103459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129L12, full
           insert sequence
          Length = 1868

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 acgccgccggggcgcagcacggcc 288
           ||||||||| ||||||||||||||
Sbjct: 474 acgccgccgcggcgcagcacggcc 497
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     acggcgcgccggacgccgcg 227
               ||||||||||||||||||||
Sbjct: 3304444 acggcgcgccggacgccgcg 3304463
to top
>gb|AF009336.1|AF009336 Streptomyces coelicolor lipase (lipA), and LipR activator (lipR)
            genes, complete cds
          Length = 6286

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   ggcccgccggcgacggcgac 70
            ||||||||||||||||||||
Sbjct: 5715 ggcccgccggcgacggcgac 5696
to top
>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   gacgccgtggagaagggcagcggc 414
             |||||||||||| |||||||||||
Sbjct: 93168 gacgccgtggaggagggcagcggc 93191
to top
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
             sequence
          Length = 101125

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   gacgccgtggagaagggcagcggc 414
             |||||||||||| |||||||||||
Sbjct: 27538 gacgccgtggaggagggcagcggc 27561
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    acggcgcgccggacgccgcg 227
              ||||||||||||||||||||
Sbjct: 956337 acggcgcgccggacgccgcg 956318
to top
>gb|M21474.1|HSBGPI Bovine herpesvirus type 1 glycoprotein 1 gene, complete cds
          Length = 3426

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ggcccgccggcgacggcgac 70
            ||||||||||||||||||||
Sbjct: 1936 ggcccgccggcgacggcgac 1955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,792,565
Number of Sequences: 3902068
Number of extensions: 2792565
Number of successful extensions: 86037
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83485
Number of HSP's gapped (non-prelim): 2552
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top