ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41b02 |
|---|---|
| Clone Library Name | barley_pub |
>Y577_METJA (Q57997) Protein MJ0577| Length = 162 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/41 (46%), Positives = 28/41 (68%) Frame = -1 Query: 506 GANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK 384 G ++++MGSHG K LLGSV++ + +N PVL+VK K Sbjct: 120 GVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 160
>Y531_METJA (Q57951) Hypothetical protein MJ0531| Length = 170 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/42 (47%), Positives = 31/42 (73%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 +K A+++VMG+ G +R LLGSV++ + NA+CPVL+VK Sbjct: 124 EKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHCPVLVVK 165
>Y2028_MYCBO (P64922) Hypothetical protein Mb2028c| Length = 295 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/56 (42%), Positives = 31/56 (55%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK*QDEQFMGD*Q*CPYL 336 A ++V+GS G G R LLGSVS V A CPV ++ S D+ + D Q P L Sbjct: 111 AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHS---DDAVIPDPQHAPVL 163 Score = 33.5 bits (75), Expect = 0.35 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A ++V+GSHG G LLGSVS+ + A PV++ + Sbjct: 256 AQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>Y2005_MYCTU (P64921) Hypothetical protein Rv2005c/MT2061| Length = 295 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/56 (42%), Positives = 31/56 (55%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK*QDEQFMGD*Q*CPYL 336 A ++V+GS G G R LLGSVS V A CPV ++ S D+ + D Q P L Sbjct: 111 AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHS---DDAVIPDPQHAPVL 163 Score = 33.5 bits (75), Expect = 0.35 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A ++V+GSHG G LLGSVS+ + A PV++ + Sbjct: 256 AQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 38.5 bits (88), Expect = 0.011 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK 384 D + +++VMGS G K LLGS S+Y V+ ++ PV++ + K Sbjct: 528 DYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPVMVARKK 571
>YXIE_BACSU (P42297) Hypothetical protein yxiE precursor| Length = 148 Score = 35.8 bits (81), Expect = 0.071 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 506 GANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 G +++V+GS G K +LGSVS + CPVLIV+ Sbjct: 110 GVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
>YQA3_THEAQ (P74897) Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase| 3'region Length = 137 Score = 35.4 bits (80), Expect = 0.093 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A+++VMG+ G G LGS S V+ A CPVL+V+ Sbjct: 100 ADLIVMGTRGLGAVGSLFLGSQSQKVVAEAPCPVLLVR 137
>Y2019_MYCBO (P0A5F8) Hypothetical protein Mb2019| Length = 317 Score = 33.9 bits (76), Expect = 0.27 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A ++V+GSHG G F LGSVS V++ PV++ + Sbjct: 271 AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -1 Query: 497 VLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 393 ++V+G G G ALLGSVS V +A+ PV ++ Sbjct: 124 MVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>Y1996_MYCTU (P0A5F7) Hypothetical protein Rv1996/MT2052| Length = 317 Score = 33.9 bits (76), Expect = 0.27 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A ++V+GSHG G F LGSVS V++ PV++ + Sbjct: 271 AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -1 Query: 497 VLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 393 ++V+G G G ALLGSVS V +A+ PV ++ Sbjct: 124 MVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>NHAX_BACSU (O07552) Stress response protein nhaX| Length = 166 Score = 33.1 bits (74), Expect = 0.46 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 +++ A+++V GS K+ + GSVS+ + ++ PVLIVK Sbjct: 125 NRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIVK 166
>Y1388_SYNY3 (P74148) Hypothetical protein sll1388| Length = 154 Score = 32.7 bits (73), Expect = 0.60 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 A+++V+G G LGSVS Y + + C VLIV+ Sbjct: 116 ADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>Y1654_SYNY3 (P72817) Hypothetical protein sll1654| Length = 157 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 393 D++ A+++VMG G G + SV+ ++ + CPVL+V Sbjct: 116 DEVNADLIVMGCRGLGLTTEGVAESVTARVINLSPCPVLVV 156
>Y1916_COXBU (P45680) Hypothetical protein CBU1916| Length = 146 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = -1 Query: 506 GANVLVMGSHG-YGFFKRALLGSVSDYCVSNANCPVLIVKSK 384 G +++++GSHG +G + LLGS S+ + A C VL V+ K Sbjct: 105 GVDLIIVGSHGRHGI--QLLLGSTSNAVLHGAKCDVLAVRIK 144
>USPG_SHIFL (Q83M07) Universal stress protein G| Length = 142 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 102 EELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>USPG_ECOLI (P39177) Universal stress protein G| Length = 142 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 102 EELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>USPG_ECO57 (Q8XBT3) Universal stress protein G| Length = 142 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 390 ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 102 EELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>Y1101_SYNY3 (P72745) Hypothetical protein slr1101| Length = 108 Score = 29.6 bits (65), Expect = 5.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 503 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 393 ++++V+G G LLGSV +Y +A+C V +V Sbjct: 68 SDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVV 104
>Y2346_MYCBO (P64996) Hypothetical protein Mb2346c| Length = 292 Score = 29.6 bits (65), Expect = 5.1 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLI 396 ++L A VLV+GS G R L+GS +D + ++ PV I Sbjct: 100 EELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>Y2319_MYCTU (P64995) Hypothetical protein Rv2319c/MT2382| Length = 292 Score = 29.6 bits (65), Expect = 5.1 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = -1 Query: 515 DKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLI 396 ++L A VLV+GS G R L+GS +D + ++ PV I Sbjct: 100 EELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor| TEC) (Translocated in extraskeletal chondrosarcoma) Length = 627 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 315 GFFKRTVQKNAKYVCLANKNCPV 337
>NR4A2_RAT (Q07917) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) (Regenerating liver nuclear receptor 1) (RNR-1) (SL-322) (Nuclear orphan receptor HZF-3) Length = 598 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NR4A2_MOUSE (Q06219) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) Length = 598 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NR4A2_HUMAN (P43354) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (Immediate-early response protein NOT) (Transcriptionally-inducible nuclear receptor) Length = 598 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NHR9_CAEEL (Q23489) Nuclear hormone receptor family member nhr-9| Length = 332 Score = 29.3 bits (64), Expect = 6.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 467 FFKRALLGSVSDYCVSNANC 408 FF+RA LG +C++N NC Sbjct: 37 FFRRATLGKSEKFCINNDNC 56
>NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1) (Neuron-derived orphan receptor 1) (Mitogen-induced nuclear orphan receptor) Length = 626 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 314 GFFKRTVQKNAKYVCLANKNCPV 336
>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2) Length = 628 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 470 GFFKRALLGSVSDYCVSNANCPV 402 GFFKR + + C++N NCPV Sbjct: 316 GFFKRTVQKNAKYVCLANKNCPV 338 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,333,753 Number of Sequences: 219361 Number of extensions: 1209953 Number of successful extensions: 3118 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3061 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3117 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
