ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 252 bits (127), Expect = 9e-64 Identities = 196/219 (89%) Strand = Plus / Minus Query: 238 gctaagcaatgccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcgg 297 |||||||||||||||| || || ||||| ||||| ||||||||||| || || ||||||| Sbjct: 3744848 gctaagcaatgccgccattgactcgaatcacctggccgttgacccactcggcggcgtcgg 3744789 Query: 298 tgcagaggaacccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||||||| |||||| | || |||||||||||||||||||| |||||||||||||||| Sbjct: 3744788 tgcagaggaagccgaccaccggagcgatgtcgccgacctcgccgagccgccccatcgggt 3744729 Query: 358 gcccggccctgaacctctccaccgcctcctcgctcttcccctcgaagaagagctccgtcg 417 ||||||| |||||||||||||||||||||||||||| || ||||||| |||||||||| Sbjct: 3744728 tcccggccttgaacctctccaccgcctcctcgctcttgccggcgaagaacagctccgtcg 3744669 Query: 418 ccacacgccccggcgcgacgcagttcaccgtcacccgcg 456 |||| | |||||||||||||||||||| |||||||||| Sbjct: 3744668 ccacggggcccggcgcgacgcagttcacggtcacccgcg 3744630 Score = 129 bits (65), Expect = 9e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 249 ccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaac 308 |||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||| Sbjct: 22363504 ccgccgttgacccggatgacctggccgttgacccactcggcggcgtcggtgcagaggaac 22363445 Query: 309 ccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | ||||||||||||||| ||||||| |||||||||||||||| Sbjct: 22363444 ccgaccactggcgcgatgtcgccggcctcgccgagccgccccatcgggt 22363396 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 277 tgacccattcagccgcgtcggtgcagaggaacccgaccgcaggcgcgatgtcgc 330 ||||||| || || |||||| ||| ||||||||||||||| ||||||||||||| Sbjct: 3749384 tgacccactcggcggcgtcgatgcggaggaacccgaccgccggcgcgatgtcgc 3749437 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 248 gccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaa 307 ||||||||| || || || ||||| |||||| ||| || || ||||||||||||||||| Sbjct: 3745459 gccgccgttgacacgtatgacctggccgttggtccactcggcggcgtcggtgcagaggaa 3745518 Query: 308 cccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | |||||||||||| ||||| ||||||||| |||||| Sbjct: 3745519 gccgaccatggcggcgatgtcgccgggatcgccgagccgccccgtcgggt 3745568 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 411 tccgtcgccacacgccccggcgcgacgcagttcaccgt 448 ||||||||||| | |||||||||||||||||| |||| Sbjct: 3745622 tccgtcgccacggggcccggcgcgacgcagttcgccgt 3745659 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 acctctccaccgcctcctcgc 390 ||||||||||||||||||||| Sbjct: 9964803 acctctccaccgcctcctcgc 9964783 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ttagttgtagtttagttatttaga 137 |||||||||||||||| ||||||| Sbjct: 28043976 ttagttgtagtttagtaatttaga 28043999
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 252 bits (127), Expect = 9e-64 Identities = 196/219 (89%) Strand = Plus / Minus Query: 238 gctaagcaatgccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcgg 297 |||||||||||||||| || || ||||| ||||| ||||||||||| || || ||||||| Sbjct: 89199 gctaagcaatgccgccattgactcgaatcacctggccgttgacccactcggcggcgtcgg 89140 Query: 298 tgcagaggaacccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||||||| |||||| | || |||||||||||||||||||| |||||||||||||||| Sbjct: 89139 tgcagaggaagccgaccaccggagcgatgtcgccgacctcgccgagccgccccatcgggt 89080 Query: 358 gcccggccctgaacctctccaccgcctcctcgctcttcccctcgaagaagagctccgtcg 417 ||||||| |||||||||||||||||||||||||||| || ||||||| |||||||||| Sbjct: 89079 tcccggccttgaacctctccaccgcctcctcgctcttgccggcgaagaacagctccgtcg 89020 Query: 418 ccacacgccccggcgcgacgcagttcaccgtcacccgcg 456 |||| | |||||||||||||||||||| |||||||||| Sbjct: 89019 ccacggggcccggcgcgacgcagttcacggtcacccgcg 88981 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 277 tgacccattcagccgcgtcggtgcagaggaacccgaccgcaggcgcgatgtcgc 330 ||||||| || || |||||| ||| ||||||||||||||| ||||||||||||| Sbjct: 93735 tgacccactcggcggcgtcgatgcggaggaacccgaccgccggcgcgatgtcgc 93788 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 248 gccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaa 307 ||||||||| || || || ||||| |||||| ||| || || ||||||||||||||||| Sbjct: 89810 gccgccgttgacacgtatgacctggccgttggtccactcggcggcgtcggtgcagaggaa 89869 Query: 308 cccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | |||||||||||| ||||| ||||||||| |||||| Sbjct: 89870 gccgaccatggcggcgatgtcgccgggatcgccgagccgccccgtcgggt 89919 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 411 tccgtcgccacacgccccggcgcgacgcagttcaccgt 448 ||||||||||| | |||||||||||||||||| |||| Sbjct: 89973 tccgtcgccacggggcccggcgcgacgcagttcgccgt 90010
>ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 786 Score = 250 bits (126), Expect = 4e-63 Identities = 195/218 (89%) Strand = Plus / Minus Query: 239 ctaagcaatgccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggt 298 ||||||||||||||| || || ||||| ||||| ||||||||||| || || |||||||| Sbjct: 786 ctaagcaatgccgccattgactcgaatcacctggccgttgacccactcggcggcgtcggt 727 Query: 299 gcagaggaacccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggtg 358 ||||||||| |||||| | || |||||||||||||||||||| |||||||||||||||| Sbjct: 726 gcagaggaagccgaccaccggagcgatgtcgccgacctcgccgagccgccccatcgggtt 667 Query: 359 cccggccctgaacctctccaccgcctcctcgctcttcccctcgaagaagagctccgtcgc 418 ||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||| Sbjct: 666 cccggccttgaacctctccaccgcctcctcgctcttgccggcgaagaacagctccgtcgc 607 Query: 419 cacacgccccggcgcgacgcagttcaccgtcacccgcg 456 ||| | |||||||||||||||||||| |||||||||| Sbjct: 606 cacggggcccggcgcgacgcagttcacggtcacccgcg 569
>ref|XM_478715.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 129 bits (65), Expect = 9e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 249 ccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaac 308 |||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||| Sbjct: 788 ccgccgttgacccggatgacctggccgttgacccactcggcggcgtcggtgcagaggaac 729 Query: 309 ccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | ||||||||||||||| ||||||| |||||||||||||||| Sbjct: 728 ccgaccactggcgcgatgtcgccggcctcgccgagccgccccatcgggt 680
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 129 bits (65), Expect = 9e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 249 ccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaac 308 |||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||| Sbjct: 168750 ccgccgttgacccggatgacctggccgttgacccactcggcggcgtcggtgcagaggaac 168691 Query: 309 ccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | ||||||||||||||| ||||||| |||||||||||||||| Sbjct: 168690 ccgaccactggcgcgatgtcgccggcctcgccgagccgccccatcgggt 168642
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 129 bits (65), Expect = 9e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 249 ccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaac 308 |||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||| Sbjct: 24571 ccgccgttgacccggatgacctggccgttgacccactcggcggcgtcggtgcagaggaac 24512 Query: 309 ccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | ||||||||||||||| ||||||| |||||||||||||||| Sbjct: 24511 ccgaccactggcgcgatgtcgccggcctcgccgagccgccccatcgggt 24463
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 10 aacggttttactaaaacacaactagatgtgagataagtattacacatttaagttctatat 69 ||||||||| ||||| |||| |||||||||||||||| ||| ||||| |||||| ||||| Sbjct: 6674 aacggttttgctaaagcacacctagatgtgagataagcattgcacatctaagttatatat 6615 Query: 70 cattgatcttacatcaagattcat 93 | |||||||||| | ||||||||| Sbjct: 6614 ctttgatcttacgtgaagattcat 6591
>gb|AY347806.1| Malus x domestica clone 8-3 alcohol dehydrogenase mRNA, partial cds Length = 369 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 402 aagaagagctccgtcgccacacgccccggcgcgacgcagttcac 445 ||||| ||||||||||||||| |||||||||| ||||| ||||| Sbjct: 347 aagaacagctccgtcgccacaggccccggcgcaacgcaattcac 304
>ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 248 gccgccgttaacccgaataacctgaccgttgacccattcagccgcgtcggtgcagaggaa 307 ||||||||| || || || ||||| |||||| ||| || || ||||||||||||||||| Sbjct: 786 gccgccgttgacacgtatgacctggccgttggtccactcggcggcgtcggtgcagaggaa 727 Query: 308 cccgaccgcaggcgcgatgtcgccgacctcgccaagccgccccatcgggt 357 |||||| | |||||||||||| ||||| ||||||||| |||||| Sbjct: 726 gccgaccatggcggcgatgtcgccgggatcgccgagccgccccgtcgggt 677 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 411 tccgtcgccacacgccccggcgcgacgcagttcaccgt 448 ||||||||||| | |||||||||||||||||| |||| Sbjct: 623 tccgtcgccacggggcccggcgcgacgcagttcgccgt 586
>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete sequence Length = 272840 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 165 ctgtgtcctggttaaaaagaaa 186 |||||||||||||||||||||| Sbjct: 209161 ctgtgtcctggttaaaaagaaa 209182
>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence Length = 171720 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 210 agaaactgagaaacagagacac 231 |||||||||||||||||||||| Sbjct: 22185 agaaactgagaaacagagacac 22206
>gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosome 12, complete sequence Length = 196418 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 agaaactgagaaacagagaca 230 ||||||||||||||||||||| Sbjct: 120432 agaaactgagaaacagagaca 120452
>ref|XM_477378.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 acctctccaccgcctcctcgc 390 ||||||||||||||||||||| Sbjct: 211 acctctccaccgcctcctcgc 231
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 21825 gaagaaactgagaaacagaga 21805 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 catttaagttctatatcatt 73 |||||||||||||||||||| Sbjct: 1544499 catttaagttctatatcatt 1544480
>ref|XM_742177.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g04640) partial mRNA Length = 1212 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 ctgaacctctccaccgcctcc 386 ||||||||||||||||||||| Sbjct: 570 ctgaacctctccaccgcctcc 550
>gb|AY055589.1| Ipomoea batatas cysteine proteinase precursor (SPG31) gene, complete cds Length = 2294 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 tttagttgtagtttagttatttaga 137 |||| |||||||||||||||||||| Sbjct: 191 tttaattgtagtttagttatttaga 215
>gb|AC153663.6| Mus musculus BAC clone RP23-12J8 from chromosome 12, complete sequence Length = 248166 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 agaaactgagaaacagagaca 230 ||||||||||||||||||||| Sbjct: 132222 agaaactgagaaacagagaca 132202
>ref|XM_967620.1| PREDICTED: Tribolium castaneum similar to CG14215-PA (LOC661465), mRNA Length = 5982 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 5287 gaagaaactgagaaacagaga 5307
>gb|AC104464.2| Homo sapiens chromosome 1 clone RP5-994L8, complete sequence Length = 153772 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 131217 gaagaaactgagaaacagaga 131237
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 acggttttactaaaacacaactagatgtg 39 |||||||| ||||| |||||||||||||| Sbjct: 180300 acggttttgctaaagcacaactagatgtg 180328
>gb|AC141053.2| Homo sapiens chromosome 16 clone CTD-3076M17, complete sequence Length = 98702 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 21998 gaagaaactgagaaacagaga 21978
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 acctctccaccgcctcctcgc 390 ||||||||||||||||||||| Sbjct: 36974663 acctctccaccgcctcctcgc 36974643
>gb|AC127090.4| Homo sapiens BAC clone CTD-2150M5 from 4, complete sequence Length = 41770 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 10609 gaagaaactgagaaacagaga 10589
>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1402_H07 Length = 140620 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 acctctccaccgcctcctcgc 390 ||||||||||||||||||||| Sbjct: 64967 acctctccaccgcctcctcgc 64947
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 21825 gaagaaactgagaaacagaga 21805
>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0685B06 Length = 140293 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 acctctccaccgcctcctcgc 390 ||||||||||||||||||||| Sbjct: 94335 acctctccaccgcctcctcgc 94315
>emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20, complete sequence Length = 248581 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tttactaaaacacaactagat 36 ||||||||||||||||||||| Sbjct: 190590 tttactaaaacacaactagat 190610
>dbj|AP001124.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-775A1, complete sequences Length = 90354 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 gaagaaactgagaaacagaga 228 ||||||||||||||||||||| Sbjct: 20327 gaagaaactgagaaacagaga 20347
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 cctcctcgctcttcccctcg 401 |||||||||||||||||||| Sbjct: 3594371 cctcctcgctcttcccctcg 3594352
>gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome 3, complete sequence Length = 203513 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aagaaactgagaaacagaga 228 |||||||||||||||||||| Sbjct: 12302 aagaaactgagaaacagaga 12321
>gb|AC158141.8| Mus musculus chromosome 5, clone RP23-281M20, complete sequence Length = 220396 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tttactaaaacacaactaga 35 |||||||||||||||||||| Sbjct: 191386 tttactaaaacacaactaga 191405
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cccggcgcgacgcagttcac 445 |||||||||||||||||||| Sbjct: 559096 cccggcgcgacgcagttcac 559077
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatcttacatcaagattcat 93 |||||||||||||||||||| Sbjct: 8641 gatcttacatcaagattcat 8660
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 cccggcgcgacgcagttcac 445 |||||||||||||||||||| Sbjct: 3215675 cccggcgcgacgcagttcac 3215694
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatcttacatcaagattcat 93 |||||||||||||||||||| Sbjct: 51406 gatcttacatcaagattcat 51425
>ref|XM_452132.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B13497g predicted mRNA Length = 1227 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 taaaaagaaatcggaaacatccat 200 |||||||||||| ||||||||||| Sbjct: 849 taaaaagaaatccgaaacatccat 826
>gb|AC002299.1|HUAC002299 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-113A6 ~complete genomic sequence, complete sequence Length = 171681 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gaagaaactgagaaacagag 227 |||||||||||||||||||| Sbjct: 139468 gaagaaactgagaaacagag 139487
>ref|XM_807317.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503579.40) partial mRNA Length = 1359 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 cctctccaccgcctcctcgctctt 394 ||||||||||||||||||| |||| Sbjct: 678 cctctccaccgcctcctcgatctt 655
>gb|AC125138.4| Mus musculus BAC clone RP24-324N8 from chromosome 5, complete sequence Length = 171978 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttactaaaacacaactaga 35 |||||||||||||||||||| Sbjct: 157227 tttactaaaacacaactaga 157208
>gb|AC130448.2| Homo sapiens chromosome 16 clone CTA-113A6, complete sequence Length = 171572 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagag 227 |||||||||||||||||||| Sbjct: 32214 gaagaaactgagaaacagag 32195
>gb|AC139292.4| Mus musculus BAC clone RP24-279K6 from chromosome 3, complete sequence Length = 165051 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagaaactgagaaacagaga 228 |||||||||||||||||||| Sbjct: 96093 aagaaactgagaaacagaga 96074
>emb|AL139081.21| Human DNA sequence from clone RP11-179A7 on chromosome 13 Contains parts of 2 novel genes and the RFC3 gene for replication factor C (activator 1) 3, 38kDa, complete sequence Length = 185602 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagaaactgagaaacagaga 228 |||||||||||||||||||| Sbjct: 157040 aagaaactgagaaacagaga 157021
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 taaaaagaaatcggaaacatccat 200 |||||||||||| ||||||||||| Sbjct: 1181884 taaaaagaaatccgaaacatccat 1181861
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 cccggcgcgacgcagttcac 445 |||||||||||||||||||| Sbjct: 2945540 cccggcgcgacgcagttcac 2945559
>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 Length = 272698 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gataagtattacacatttaa 60 |||||||||||||||||||| Sbjct: 140832 gataagtattacacatttaa 140851
>gb|AC161369.3| Mus musculus BAC clone RP23-426C11 from chromosome 3, complete sequence Length = 202655 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aagaaactgagaaacagaga 228 |||||||||||||||||||| Sbjct: 145023 aagaaactgagaaacagaga 145042
>gb|AC096740.3| Homo sapiens BAC clone RP11-326O23 from 4, complete sequence Length = 196859 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ctcctttttagttgtagttt 126 |||||||||||||||||||| Sbjct: 90700 ctcctttttagttgtagttt 90681
>dbj|AK148671.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120432N14 product:unclassifiable, full insert sequence Length = 1516 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttactaaaacacaactaga 35 |||||||||||||||||||| Sbjct: 100 tttactaaaacacaactaga 81
>gb|AY911661.1| Fraxinus excelsior isolate frax207 rpl16-like (rpl16) gene, partial sequence; chloroplast Length = 950 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ttacacatttaagttctatatcattgat 76 ||||| |||| ||||||||||||||||| Sbjct: 238 ttacatatttgagttctatatcattgat 211
>gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosome 9, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 aaggaagaaactgagaaacagaga 228 ||||||||||| |||||||||||| Sbjct: 57337 aaggaagaaacagagaaacagaga 57314
>gb|AC091118.2|AC091118 Homo sapiens chromosome 16 clone CTC-510K1, complete sequence Length = 158829 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagag 227 |||||||||||||||||||| Sbjct: 39797 gaagaaactgagaaacagag 39778
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taactattttacatctagat 164 |||||||||||||||||||| Sbjct: 19481310 taactattttacatctagat 19481329
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatcttacatcaagattcat 93 |||||||||||||||||||| Sbjct: 29125182 gatcttacatcaagattcat 29125201
>gb|AC025438.5|AC025438 Homo sapiens chromosome 16 clone CTC-470N16, complete sequence Length = 158827 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gaagaaactgagaaacagag 227 |||||||||||||||||||| Sbjct: 39797 gaagaaactgagaaacagag 39778
>gb|AC096712.3| Homo sapiens BAC clone RP11-1I10 from 4, complete sequence Length = 81505 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 acatccatttggaaggaaga 212 |||||||||||||||||||| Sbjct: 21771 acatccatttggaaggaaga 21790
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ttagttgtagtttagttatttaga 137 |||||||||||||||| ||||||| Sbjct: 133310 ttagttgtagtttagtaatttaga 133333
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ttagttgtagtttagttatttaga 137 |||||||||||||||| ||||||| Sbjct: 27272 ttagttgtagtttagtaatttaga 27295
>emb|AL929536.7| Zebrafish DNA sequence from clone CH211-158E23, complete sequence Length = 151341 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 taagttctatatcattgatcttac 81 |||||||| ||||||||||||||| Sbjct: 118663 taagttctctatcattgatcttac 118640
>gb|AC145042.3| Macropus eugenii clone ME_KBa-289E24, complete sequence Length = 161181 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 catttaagttctatatcatt 73 |||||||||||||||||||| Sbjct: 67480 catttaagttctatatcatt 67461
>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155839 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 aagtattacacatttaagttctat 67 |||||||||||||| ||||||||| Sbjct: 101275 aagtattacacattcaagttctat 101298
>gb|AC118685.10| Mus musculus chromosome 5, clone RP23-412L2, complete sequence Length = 200341 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tggaaggaagaaactgagaa 221 |||||||||||||||||||| Sbjct: 150931 tggaaggaagaaactgagaa 150912
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cccggcgcgacgcagttcac 445 |||||||||||||||||||| Sbjct: 1928952 cccggcgcgacgcagttcac 1928933
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taactattttacatctagat 164 |||||||||||||||||||| Sbjct: 19407523 taactattttacatctagat 19407542
>emb|AL645601.13| Mouse DNA sequence from clone RP23-393B19 on chromosome 11 Contains two novel genes, the 5' end of the Msi2h gene for Musashi homolog 2 (Drosophila) and a CpG island, complete sequence Length = 206389 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaaactgagaaacagagaca 230 |||||||||||||||||||| Sbjct: 139809 gaaactgagaaacagagaca 139828
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taactattttacatctagat 164 |||||||||||||||||||| Sbjct: 159004 taactattttacatctagat 159023
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 taactattttacatctagat 164 |||||||||||||||||||| Sbjct: 13491 taactattttacatctagat 13510
>emb|AL663073.9| Mouse DNA sequence from clone RP23-197O6 on chromosome X, complete sequence Length = 192304 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ggaaggaagaaactgagaaa 222 |||||||||||||||||||| Sbjct: 138941 ggaaggaagaaactgagaaa 138960
>emb|AL132666.8|CNS01DT8 Human chromosome 14 DNA sequence BAC R-16N22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 145250 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 aagaaactgagaaacagaga 228 |||||||||||||||||||| Sbjct: 38908 aagaaactgagaaacagaga 38889
>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete sequence Length = 252953 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 ttggaaggaagaaactgaga 220 |||||||||||||||||||| Sbjct: 222862 ttggaaggaagaaactgaga 222881
>emb|AL833252.1|HSM804565 Homo sapiens mRNA; cDNA DKFZp761J0720 (from clone DKFZp761J0720) Length = 3602 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gaagaaactgagaaacagag 227 |||||||||||||||||||| Sbjct: 314 gaagaaactgagaaacagag 333 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,149,380 Number of Sequences: 3902068 Number of extensions: 4149380 Number of successful extensions: 82998 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82320 Number of HSP's gapped (non-prelim): 671 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
