ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative... 204 2e-49
2gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III ... 204 2e-49
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
4gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds 204 2e-49
5gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 204 2e-49
6dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 204 2e-49
8dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
9ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative... 46 0.11
10gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 46 0.11
11gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III ch... 46 0.11
12dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
13dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
14dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
15dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
16ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative... 44 0.42
17gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequ... 44 0.42
18dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
19dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
20dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
21dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
22dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
23gb|AY308825.1| Sus scrofa isolate LR2 prolactin receptor (PRLR) ... 42 1.7
24gb|AY308824.1| Sus scrofa isolate Minipig prolactin receptor (PR... 42 1.7
25gb|U96306.1|SSU96306 Sus scrofa prolactin receptor (PRLR) gene, ... 42 1.7
26gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, comple... 40 6.5
27gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 6.5
28emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 o... 40 6.5
29emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.5
30emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.5
31emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 6.5
32emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.5
33gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 6.5
34gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q2... 40 6.5
35gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 6.5
36gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 6.5
37gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 6.5
38gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, comp... 40 6.5
39gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 6.5 
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           RCB4 (OSJNBa0032I20.7), mRNA
          Length = 924

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
           |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 882 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 823

                                                                       
Query: 180 gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
            ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 822 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 763

                                                                       
Query: 240 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 762 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 703

                                                                       
Query: 300 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 702 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 643

                      
Query: 360 ctggaagttga 370
           |||||||||||
Sbjct: 642 ctggaagttga 632
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>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4
           (Rcb4) mRNA, complete cds
          Length = 1158

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
           |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 934 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 875

                                                                       
Query: 180 gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
            ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 874 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 815

                                                                       
Query: 240 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 814 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 755

                                                                       
Query: 300 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 754 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 695

                      
Query: 360 ctggaagttga 370
           |||||||||||
Sbjct: 694 ctggaagttga 684
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                            
Query: 120      tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
                |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 14045725 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 14045666

                                                                            
Query: 180      gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
                 ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 14045665 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 14045606

                                                                            
Query: 240      ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
                |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 14045605 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 14045546

                                                                            
Query: 300      ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
                ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 14045545 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 14045486

                           
Query: 360      ctggaagttga 370
                |||||||||||
Sbjct: 14045485 ctggaagttga 14045475



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 343      gcgccgtaggcgtaaaactggaagttgacatagtc 377
                ||||||||| |||| |||||||||||||| |||||
Sbjct: 14076530 gcgccgtagccgtagaactggaagttgacgtagtc 14076496



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                      
Query: 399      ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
                |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 14088926 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 14088873



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 344      cgccgtaggcgtaaaactggaagttgac 371
                |||||||| |||| ||||||||||||||
Sbjct: 14088981 cgccgtagccgtagaactggaagttgac 14088954
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>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds
          Length = 941

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
           |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 807 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 748

                                                                       
Query: 180 gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
            ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 747 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 688

                                                                       
Query: 240 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 687 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 628

                                                                       
Query: 300 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 627 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 568

                      
Query: 360 ctggaagttga 370
           |||||||||||
Sbjct: 567 ctggaagttga 557
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                         
Query: 120   tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
             |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 61854 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 61795

                                                                         
Query: 180   gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
              ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 61794 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 61735

                                                                         
Query: 240   ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
             |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 61734 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 61675

                                                                         
Query: 300   ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
             ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 61674 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 61615

                        
Query: 360   ctggaagttga 370
             |||||||||||
Sbjct: 61614 ctggaagttga 61604



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 343   gcgccgtaggcgtaaaactggaagttgacatagtc 377
             ||||||||| |||| |||||||||||||| |||||
Sbjct: 92659 gcgccgtagccgtagaactggaagttgacgtagtc 92625



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                    
Query: 399    ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
              |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 105055 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 105002



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 344    cgccgtaggcgtaaaactggaagttgac 371
              |||||||| |||| ||||||||||||||
Sbjct: 105110 cgccgtagccgtagaactggaagttgac 105083
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>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full
           insert sequence
          Length = 1211

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
           |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 935 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 876

                                                                       
Query: 180 gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
            ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 875 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 816

                                                                       
Query: 240 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 815 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 756

                                                                       
Query: 300 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 755 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 696

                      
Query: 360 ctggaagttga 370
           |||||||||||
Sbjct: 695 ctggaagttga 685
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                            
Query: 120      tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
                |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 14053967 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 14053908

                                                                            
Query: 180      gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
                 ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 14053907 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 14053848

                                                                            
Query: 240      ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
                |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 14053847 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 14053788

                                                                            
Query: 300      ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
                ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 14053787 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 14053728

                           
Query: 360      ctggaagttga 370
                |||||||||||
Sbjct: 14053727 ctggaagttga 14053717



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 343      gcgccgtaggcgtaaaactggaagttgacatagtc 377
                ||||||||| |||| |||||||||||||| |||||
Sbjct: 14084772 gcgccgtagccgtagaactggaagttgacgtagtc 14084738



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                      
Query: 399      ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
                |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 14097168 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 14097115



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 344      cgccgtaggcgtaaaactggaagttgac 371
                |||||||| |||| ||||||||||||||
Sbjct: 14097223 cgccgtagccgtagaactggaagttgac 14097196
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>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full
           insert sequence
          Length = 1096

 Score =  196 bits (99), Expect = 5e-47
 Identities = 213/251 (84%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccagacaaagatgccgta 179
           |||||| |||||||| |||||| |||||||||| || ||||||||||  |||||||||||
Sbjct: 820 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 761

                                                                       
Query: 180 gagcttgccccgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 239
            ||||| |||  || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 760 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 701

                                                                       
Query: 240 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 299
           | |  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 700 gatcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 641

                                                                       
Query: 300 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtaaaa 359
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||| ||
Sbjct: 640 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 581

                      
Query: 360 ctggaagttga 370
           |||||||||||
Sbjct: 580 ctggaagttga 570
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>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.10), mRNA
          Length = 861

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 602 gcgccgtagccgtagaactggaagttgacgtagtc 568
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>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 343   gcgccgtaggcgtaaaactggaagttgacatagtc 377
             ||||||||| |||| |||||||||||||| |||||
Sbjct: 16168 gcgccgtagccgtagaactggaagttgacgtagtc 16134



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 399   ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
             |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 28564 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 28511



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 344   cgccgtaggcgtaaaactggaagttgac 371
             |||||||| |||| ||||||||||||||
Sbjct: 28619 cgccgtagccgtagaactggaagttgac 28592
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>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene,
           complete cds
          Length = 1038

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 653 gcgccgtagccgtagaactggaagttgacgtagtc 619
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>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full
           insert sequence
          Length = 989

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full
           insert sequence
          Length = 1053

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full
           insert sequence
          Length = 1026

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full
           insert sequence
          Length = 1069

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 343 gcgccgtaggcgtaaaactggaagttgacatagtc 377
           ||||||||| |||| |||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.12), mRNA
          Length = 867

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 552 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 499



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 607 cgccgtagccgtagaactggaagttgac 580
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>gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequence
          Length = 146276

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 25     attccatatgatttcactcata 46
              ||||||||||||||||||||||
Sbjct: 122897 attccatatgatttcactcata 122918
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>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full
           insert sequence
          Length = 1089

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 576 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 523



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full
           insert sequence
          Length = 1108

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 571 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 518



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 626 cgccgtagccgtagaactggaagttgac 599
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>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full
           insert sequence
          Length = 1069

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 576 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 523



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full
           insert sequence
          Length = 1068

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 575 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 522



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 630 cgccgtagccgtagaactggaagttgac 603
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>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full
           insert sequence
          Length = 1134

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 399 ccacagcgtctggtagtagcgttgcacgtcggcgttgccgtacggcgcgatgga 452
           |||||||| |||||||||||| |||||  ||||||   || |||||||||||||
Sbjct: 576 ccacagcggctggtagtagcgctgcaccacggcgtcctcgaacggcgcgatgga 523



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 344 cgccgtaggcgtaaaactggaagttgac 371
           |||||||| |||| ||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>gb|AY308825.1| Sus scrofa isolate LR2 prolactin receptor (PRLR) mRNA, complete cds
          Length = 1878

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  gccgtggtgaagctggccagg 273
            |||||||||||||||||||||
Sbjct: 1802 gccgtggtgaagctggccagg 1782
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>gb|AY308824.1| Sus scrofa isolate Minipig prolactin receptor (PRLR) mRNA, complete
            cds
          Length = 1878

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 253  gccgtggtgaagctggccagg 273
            |||||||||||||||||||||
Sbjct: 1802 gccgtggtgaagctggccagg 1782
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>gb|U96306.1|SSU96306 Sus scrofa prolactin receptor (PRLR) gene, partial cds
          Length = 449

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 253 gccgtggtgaagctggccagg 273
           |||||||||||||||||||||
Sbjct: 214 gccgtggtgaagctggccagg 194
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>gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, complete sequence
          Length = 180397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     aatttactcaaacctagaaactgg 74
              ||||||| ||||||||||||||||
Sbjct: 153371 aatttacacaaacctagaaactgg 153394
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>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     aatttactcaaacctagaaactgg 74
              ||||||| ||||||||||||||||
Sbjct: 205401 aatttacacaaacctagaaactgg 205378
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>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3
             Contains a CpG island, complete sequence
          Length = 199016

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    ataaatcaatttactcaaacctag 67
             ||||||||||||||||||| ||||
Sbjct: 49631 ataaatcaatttactcaaatctag 49608
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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    gccgtggtgaagctggccag 272
              ||||||||||||||||||||
Sbjct: 247443 gccgtggtgaagctggccag 247462
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    gccgtggtgaagctggccag 272
              ||||||||||||||||||||
Sbjct: 281491 gccgtggtgaagctggccag 281472
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gccgtggtgaagctggccag 272
             ||||||||||||||||||||
Sbjct: 99234 gccgtggtgaagctggccag 99253
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ttggtcgccgccgtggtgaa 263
             ||||||||||||||||||||
Sbjct: 55465 ttggtcgccgccgtggtgaa 55484
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     gcgatctgctcgtcgaagag 314
               ||||||||||||||||||||
Sbjct: 3444739 gcgatctgctcgtcgaagag 3444720
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>gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q21-q23, complete
             sequence
          Length = 109808

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    atgatttcactcataaatca 51
             ||||||||||||||||||||
Sbjct: 16336 atgatttcactcataaatca 16317
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>gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940143D9, complete sequence
          Length = 118759

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  tggcgatctgctcgtcgaag 312
            ||||||||||||||||||||
Sbjct: 5058 tggcgatctgctcgtcgaag 5077
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>gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940139D9, complete sequence
          Length = 118752

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  tggcgatctgctcgtcgaag 312
            ||||||||||||||||||||
Sbjct: 5058 tggcgatctgctcgtcgaag 5077
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 429     ggcgttgccgtacggcgcgatgga 452
               |||||||||| |||||||||||||
Sbjct: 1704825 ggcgttgccggacggcgcgatgga 1704802
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>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    cttgaatccttggttcctgg 148
              ||||||||||||||||||||
Sbjct: 115713 cttgaatccttggttcctgg 115732
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>gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940124D9, complete sequence
          Length = 118889

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    tggcgatctgctcgtcgaag 312
              ||||||||||||||||||||
Sbjct: 113701 tggcgatctgctcgtcgaag 113682


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,237,139
Number of Sequences: 3902068
Number of extensions: 3237139
Number of successful extensions: 63167
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62956
Number of HSP's gapped (non-prelim): 211
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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