ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41a02 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 138 bits (348), Expect = 6e-33 Identities = 71/76 (93%), Positives = 72/76 (94%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 SVTMEAMASAFGVTVDFID EL RFIAAGKLHCKIDKVA VLETNRPD RNAFYQ+TIKQ Sbjct: 313 SVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQ 372 Query: 292 GDFLLNRIQKLSRVID 245 GDFLLNRIQKLSRVID Sbjct: 373 GDFLLNRIQKLSRVID 388
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 136 bits (343), Expect = 2e-32 Identities = 68/76 (89%), Positives = 72/76 (94%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 SVT+EAMA AFGV+VDFIDQEL RFIAAGKLHCKIDKVAGVLETNRPD +NA YQ+TIKQ Sbjct: 311 SVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQ 370 Query: 292 GDFLLNRIQKLSRVID 245 GDFLLNRIQKLSRVID Sbjct: 371 GDFLLNRIQKLSRVID 386
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 113 bits (282), Expect = 3e-25 Identities = 53/76 (69%), Positives = 67/76 (88%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S+T++ MA +FGVTV++IDQEL RFIAAG+LH K+D+V G++ETNRPD +N YQ+TIKQ Sbjct: 313 SLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQ 372 Query: 292 GDFLLNRIQKLSRVID 245 GD LLNRIQKLSRVI+ Sbjct: 373 GDLLLNRIQKLSRVIN 388
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 111 bits (278), Expect = 8e-25 Identities = 55/76 (72%), Positives = 64/76 (84%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S+T+ MA AFGV VDFIDQEL RFIAAG+LHCKIDKV ++ETNRPD +N YQ TIK+ Sbjct: 313 SLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372 Query: 292 GDFLLNRIQKLSRVID 245 GD LLNR+QKLSRVI+ Sbjct: 373 GDLLLNRVQKLSRVIN 388
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 110 bits (274), Expect = 2e-24 Identities = 54/76 (71%), Positives = 64/76 (84%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S+T+ MA AFGV V+FIDQEL RFIAAG+LHCKIDKV ++ETNRPD +N YQ TIK+ Sbjct: 313 SLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372 Query: 292 GDFLLNRIQKLSRVID 245 GD LLNR+QKLSRVI+ Sbjct: 373 GDLLLNRVQKLSRVIN 388
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 85.9 bits (211), Expect = 5e-17 Identities = 38/75 (50%), Positives = 58/75 (77%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 ++++++MA++FGV+VD+ID++L FI KL+C ID+V GV+ TNRPDE+N YQ +KQ Sbjct: 328 ALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQ 387 Query: 292 GDFLLNRIQKLSRVI 248 GD LLN++QK + Sbjct: 388 GDVLLNKLQKYQATV 402
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 85.9 bits (211), Expect = 5e-17 Identities = 42/76 (55%), Positives = 55/76 (72%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 +V ++ MA FGV+ FID+EL R IA G+L C+ID V GV+E N D +N Y++ IK Sbjct: 334 TVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKD 393 Query: 292 GDFLLNRIQKLSRVID 245 GD LLNRIQKL+RVI+ Sbjct: 394 GDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 80.1 bits (196), Expect = 3e-15 Identities = 36/75 (48%), Positives = 56/75 (74%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 ++++++MASAFGV+V F+D +L +FI +L+C ID+V G++ETNRPD +NA Y +KQ Sbjct: 347 TLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQ 406 Query: 292 GDFLLNRIQKLSRVI 248 GD LL ++QK + Sbjct: 407 GDGLLTKLQKYGAAV 421
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/62 (30%), Positives = 33/62 (53%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 SV + MA AF +V +++EL I ++ +ID +L D+RNA +Q ++ Sbjct: 352 SVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQM 411 Query: 292 GD 287 G+ Sbjct: 412 GN 413
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 38.9 bits (89), Expect = 0.007 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S M MA+AF TV ++ EL + I G ++ +ID + +L D+R+ ++ +++ Sbjct: 379 SADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQM 438 Query: 292 G 290 G Sbjct: 439 G 439
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S M MA+AF TV ++ EL + I G ++ +ID + +L D+R+ ++ ++ Sbjct: 363 SADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLM 422 Query: 292 G 290 G Sbjct: 423 G 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 37.4 bits (85), Expect = 0.019 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S M MA+AF TV ++ EL + I G ++ +ID + +L D+R+ ++ ++ Sbjct: 363 SADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLM 422 Query: 292 G 290 G Sbjct: 423 G 423
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/74 (24%), Positives = 38/74 (51%) Frame = -1 Query: 469 VTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 290 +TM+ MA ++VD + L + + K+D++AGV+ RP + N ++ Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKL 431 Query: 289 DFLLNRIQKLSRVI 248 + L++ + K + +I Sbjct: 432 NSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 35.8 bits (81), Expect = 0.057 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = -1 Query: 469 VTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 290 +TM+ MA ++VD + L + + K+D++AG++ RP + N ++ Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 431 Query: 289 DFLLNRIQKLSRVI 248 + L++ + K + +I Sbjct: 432 NSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 35.8 bits (81), Expect = 0.057 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = -1 Query: 469 VTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 290 +TM+ MA ++VD + L + + K+D++AG++ RP + N ++ Sbjct: 372 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 431 Query: 289 DFLLNRIQKLSRVI 248 + L++ + K + +I Sbjct: 432 NSLMSLVNKTTHLI 445
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 35.4 bits (80), Expect = 0.074 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = -1 Query: 472 SVTMEAMASAFGVTVDFIDQELFRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQ 293 S M MA AF +V ++ E+ + I G++ +ID +L D+RN+ ++ + Sbjct: 412 SADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIM 471 Query: 292 G 290 G Sbjct: 472 G 472
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 373 KIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVI 248 K KVA V+ NRP NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,866,597 Number of Sequences: 219361 Number of extensions: 1343052 Number of successful extensions: 3280 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3280 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
