ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 5e-50
2dbj|AK072896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 5e-50
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
4dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
5dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
6gb|DQ284478.1| Solanum tuberosum clone 148F12 putative RNA proce... 78 3e-11
7ref|NM_116386.2| Arabidopsis thaliana unknown protein AT4G01560 ... 50 0.007
8gb|AY050341.1| Arabidopsis thaliana AT4g01560/F11O4_6 mRNA, comp... 50 0.007
9emb|BX826317.1|CNS0A4KT Arabidopsis thaliana Full-length cDNA Co... 50 0.007
10emb|BX826612.1|CNS0A40N Arabidopsis thaliana Full-length cDNA Co... 50 0.007
11gb|AY086463.1| Arabidopsis thaliana clone 25253 mRNA, complete s... 50 0.007
12gb|BT020609.1| Arabidopsis thaliana At4g01560 gene, complete cds 50 0.007
13gb|AC148870.2| Chlamydomonas reinhardtii clone cr-13O11, complet... 46 0.11
14emb|CR388002.6| Zebrafish DNA sequence from clone DKEY-75M8 in l... 44 0.44
15emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, c... 44 0.44
16gb|AF096370.1|F11O4 Arabidopsis thaliana BAC F11O4 44 0.44
17emb|AL445228.13| Human DNA sequence from clone RP11-382D12 on ch... 42 1.8
18emb|AL392047.11| Human DNA sequence from clone RP11-189M8 on chr... 42 1.8
19emb|AL138775.6| Human DNA sequence from clone RP5-933E2 on chrom... 42 1.8
20gb|AF361371.1|AF361371 Escherichia coli O104 antigen gene cluste... 42 1.8
21ref|NM_001002160.1| Danio rerio zgc:86604 (zgc:86604), mRNA 42 1.8
22gb|BC071307.1| Danio rerio zgc:86604, mRNA (cDNA clone MGC:86604... 42 1.8
23gb|AF479638.1| Ovine lentivirus strain P1OLV, complete genome 40 6.9
24gb|AC135671.3| Mus musculus BAC clone RP23-440D14 from chromosom... 40 6.9
25emb|CT009545.5| M.truncatula DNA sequence from clone MTH2-107B14... 40 6.9
26gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) ge... 40 6.9
27ref|XM_739421.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.9
28gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Canc... 40 6.9
29gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7... 40 6.9
30emb|AL358777.12| Human DNA sequence from clone RP11-421M1 on chr... 40 6.9
31emb|AL031290.1|HS774I24 Human DNA sequence from clone RP4-774I24... 40 6.9
32gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Canc... 40 6.9
33gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, com... 40 6.9
34emb|BX927402.13| Zebrafish DNA sequence from clone CH211-262G12 ... 40 6.9
35gb|AF484686.1| Nuclearia moebiusi 18S small subunit ribosomal RN... 40 6.9
36gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, comple... 40 6.9
37gb|AC069302.4| Homo sapiens BAC clone RP11-322J23 from 4, comple... 40 6.9
38gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosom... 40 6.9
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
42dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.9
43gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 40 6.9
44gb|AC167564.1| Mus musculus BAC clone RP24-224G11 from chromosom... 40 6.9
45dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 40 6.9
46dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
47dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
48emb|BX511113.8| Zebrafish DNA sequence from clone DKEY-38J10 in ... 40 6.9
49dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
50emb|CR854846.8| Zebrafish DNA sequence from clone DKEY-228N9 in ... 40 6.9
51emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on ch... 40 6.9
52gb|AC156636.2| Mus musculus BAC clone RP24-401F19 from chromosom... 40 6.9
53gb|AC129975.21| Mus musculus chromosome 14, clone RP23-447I12, c... 40 6.9
54emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in... 40 6.9
55dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.9
56gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
57emb|AL672123.16| Mouse DNA sequence from clone RP23-436I3 on chr... 40 6.9
58emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.9
59dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PA... 40 6.9 
>dbj|AK121945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107G04, full
           insert sequence
          Length = 1301

 Score =  206 bits (104), Expect = 5e-50
 Identities = 149/164 (90%)
 Strand = Plus / Minus

                                                                       
Query: 350 tttcttgtccttcgaaacaattttcttttctttctcctcaaagatgtacctgtgatgacg 409
           |||||||||||| ||| ||||||| |||||||||  ||||||||||||||||||||||||
Sbjct: 959 tttcttgtcctttgaagcaattttgttttctttcatctcaaagatgtacctgtgatgacg 900

                                                                       
Query: 410 aaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggccgcggaaatttgg 469
            ||||| |||||||||| ||| |||||||||||||||||||| || || |||||||| ||
Sbjct: 899 gaaaaaaatatagtctctctgattatggaaggtcacaactcgccgaccacggaaattggg 840

                                                       
Query: 470 gtcttgagggaaaagagattgtatcatcctcccaacacgatgac 513
            ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 839 ttcttgagggaaaagagattgtatcatccttccaacacgatgac 796



 Score =  129 bits (65), Expect = 1e-26
 Identities = 137/161 (85%)
 Strand = Plus / Minus

                                                                        
Query: 170  aaatcacaggaaaaaccttctcctgctcgtgtccaggtcgggcttgtgaacccactcgta 229
            |||| ||| |||||| ||||| ||||||||||||| ||| |||||||||||||| || ||
Sbjct: 1148 aaattacaagaaaaatcttcttctgctcgtgtccatgtccggcttgtgaacccattcata 1089

                                                                        
Query: 230  ctccccgcttttcgtgtcgaaggtcccgtgttgcaaggtttgcagcttcagagtgaagcg 289
            ||||||  |||| ||||| |||||||| ||||| |||||  ||||||| || ||||||||
Sbjct: 1088 ctccccattttttgtgtcaaaggtcccatgttgtaaggtgagcagcttgagggtgaagcg 1029

                                                     
Query: 290  agggccacattcctgaaggcgacagttcacttgcttctcag 330
            ||| ||||||||||| ||||||||  | ||||||| |||||
Sbjct: 1028 aggaccacattcctggaggcgacaaattacttgctcctcag 988
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>dbj|AK072896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C13, full
           insert sequence
          Length = 3286

 Score =  206 bits (104), Expect = 5e-50
 Identities = 149/164 (90%)
 Strand = Plus / Minus

                                                                       
Query: 350 tttcttgtccttcgaaacaattttcttttctttctcctcaaagatgtacctgtgatgacg 409
           |||||||||||| ||| ||||||| |||||||||  ||||||||||||||||||||||||
Sbjct: 946 tttcttgtcctttgaagcaattttgttttctttcatctcaaagatgtacctgtgatgacg 887

                                                                       
Query: 410 aaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggccgcggaaatttgg 469
            ||||| |||||||||| ||| |||||||||||||||||||| || || |||||||| ||
Sbjct: 886 gaaaaaaatatagtctctctgattatggaaggtcacaactcgccgaccacggaaattggg 827

                                                       
Query: 470 gtcttgagggaaaagagattgtatcatcctcccaacacgatgac 513
            ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 826 ttcttgagggaaaagagattgtatcatccttccaacacgatgac 783



 Score =  101 bits (51), Expect = 2e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                        
Query: 212  cttgtgaacccactcgtactccccgcttttcgtgtcgaaggtcccgtgttgcaaggtttg 271
            |||||||||||| || ||||||||  |||| ||||| |||||||| ||||| |||||  |
Sbjct: 1093 cttgtgaacccattcatactccccattttttgtgtcaaaggtcccatgttgtaaggtgag 1034

                                                                       
Query: 272  cagcttcagagtgaagcgagggccacattcctgaaggcgacagttcacttgcttctcag 330
            |||||| || ||||||||||| ||||||||||| ||||||||  | |||||||||||||
Sbjct: 1033 cagcttgagggtgaagcgaggaccacattcctggaggcgacaaattacttgcttctcag 975
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  133 bits (67), Expect = 6e-28
 Identities = 94/103 (91%)
 Strand = Plus / Plus

                                                                           
Query: 397     acctgtgatgacgaaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggc 456
               ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |
Sbjct: 2003754 acctgtgatgacggaaaaaaatatagtctctctgattatggaaggtcacaactcgccgac 2003813

                                                          
Query: 457     cgcggaaatttgggtcttgagggaaaagagattgtatcatcct 499
               | |||||||| || |||||||||||||||||||||||||||||
Sbjct: 2003814 cacggaaattgggttcttgagggaaaagagattgtatcatcct 2003856



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                           
Query: 212     cttgtgaacccactcgtactccccgcttttcgtgtcgaaggtcccgtgttgcaaggtttg 271
               |||||||||||| || ||||||||  |||| ||||| |||||||| ||||| |||||  |
Sbjct: 2002966 cttgtgaacccattcatactccccattttttgtgtcaaaggtcccatgttgtaaggtgag 2003025

                                               
Query: 272     cagcttcagagtgaagcgagggccacattcct 303
               |||||| || ||||||||||| ||||||||||
Sbjct: 2003026 cagcttgagggtgaagcgaggaccacattcct 2003057



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                  
Query: 350     tttcttgtccttcgaaacaattttcttttctttctcctcaaagatgtacct 400
               |||||||||||| ||| ||||||| |||||||||  |||||||||||||||
Sbjct: 2003418 tttcttgtcctttgaagcaattttgttttctttcatctcaaagatgtacct 2003468



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 170     aaatcacaggaaaaaccttctcctgctcgtgtccaggtcgggct 213
               |||| ||| |||||| ||||| ||||||||||||| ||| ||||
Sbjct: 2002829 aaattacaagaaaaatcttcttctgctcgtgtccatgtccggct 2002872
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score =  133 bits (67), Expect = 6e-28
 Identities = 94/103 (91%)
 Strand = Plus / Plus

                                                                          
Query: 397    acctgtgatgacgaaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggc 456
              ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |
Sbjct: 132534 acctgtgatgacggaaaaaaatatagtctctctgattatggaaggtcacaactcgccgac 132593

                                                         
Query: 457    cgcggaaatttgggtcttgagggaaaagagattgtatcatcct 499
              | |||||||| || |||||||||||||||||||||||||||||
Sbjct: 132594 cacggaaattgggttcttgagggaaaagagattgtatcatcct 132636



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                          
Query: 212    cttgtgaacccactcgtactccccgcttttcgtgtcgaaggtcccgtgttgcaaggtttg 271
              |||||||||||| || ||||||||  |||| ||||| |||||||| ||||| |||||  |
Sbjct: 131746 cttgtgaacccattcatactccccattttttgtgtcaaaggtcccatgttgtaaggtgag 131805

                                              
Query: 272    cagcttcagagtgaagcgagggccacattcct 303
              |||||| || ||||||||||| ||||||||||
Sbjct: 131806 cagcttgagggtgaagcgaggaccacattcct 131837



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 350    tttcttgtccttcgaaacaattttcttttctttctcctcaaagatgtacct 400
              |||||||||||| ||| ||||||| |||||||||  |||||||||||||||
Sbjct: 132198 tttcttgtcctttgaagcaattttgttttctttcatctcaaagatgtacct 132248



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 170    aaatcacaggaaaaaccttctcctgctcgtgtccaggtcgggct 213
              |||| ||| |||||| ||||| ||||||||||||| ||| ||||
Sbjct: 131609 aaattacaagaaaaatcttcttctgctcgtgtccatgtccggct 131652
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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score =  133 bits (67), Expect = 6e-28
 Identities = 94/103 (91%)
 Strand = Plus / Plus

                                                                         
Query: 397   acctgtgatgacgaaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggc 456
             ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |
Sbjct: 24616 acctgtgatgacggaaaaaaatatagtctctctgattatggaaggtcacaactcgccgac 24675

                                                        
Query: 457   cgcggaaatttgggtcttgagggaaaagagattgtatcatcct 499
             | |||||||| || |||||||||||||||||||||||||||||
Sbjct: 24676 cacggaaattgggttcttgagggaaaagagattgtatcatcct 24718



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                         
Query: 212   cttgtgaacccactcgtactccccgcttttcgtgtcgaaggtcccgtgttgcaaggtttg 271
             |||||||||||| || ||||||||  |||| ||||| |||||||| ||||| |||||  |
Sbjct: 23828 cttgtgaacccattcatactccccattttttgtgtcaaaggtcccatgttgtaaggtgag 23887

                                             
Query: 272   cagcttcagagtgaagcgagggccacattcct 303
             |||||| || ||||||||||| ||||||||||
Sbjct: 23888 cagcttgagggtgaagcgaggaccacattcct 23919



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 350   tttcttgtccttcgaaacaattttcttttctttctcctcaaagatgtacct 400
             |||||||||||| ||| ||||||| |||||||||  |||||||||||||||
Sbjct: 24280 tttcttgtcctttgaagcaattttgttttctttcatctcaaagatgtacct 24330



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 170   aaatcacaggaaaaaccttctcctgctcgtgtccaggtcgggct 213
             |||| ||| |||||| ||||| ||||||||||||| ||| ||||
Sbjct: 23691 aaattacaagaaaaatcttcttctgctcgtgtccatgtccggct 23734
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>gb|DQ284478.1| Solanum tuberosum clone 148F12 putative RNA processing factor
           1-like mRNA, complete cds
          Length = 1277

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 95/111 (85%), Gaps = 2/111 (1%)
 Strand = Plus / Minus

                                                                       
Query: 402 tgatgacgaaaaaatatatagtctcgctggttatggaaggtcacaactcgtcggccgcgg 461
           ||||| |||||||||||  | || |||||||| ||||||||||||||||| || || | |
Sbjct: 862 tgatggcgaaaaaatatgaaatcacgctggttgtggaaggtcacaactcgacgtccac-g 804

                                                              
Query: 462 aaatttggg-tcttgagggaaaagagattgtatcatcctcccaacacgatg 511
           ||||| ||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 803 aaattcgggatcttgtgggaaaagtgactgtatcatcctcccaactcgatg 753
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>ref|NM_116386.2| Arabidopsis thaliana unknown protein AT4G01560 mRNA, complete cds
          Length = 1309

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 183  aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
            ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 1087 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 1047
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>gb|AY050341.1| Arabidopsis thaliana AT4g01560/F11O4_6 mRNA, complete cds
          Length = 1282

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 183  aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
            ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 1066 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 1026
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>emb|BX826317.1|CNS0A4KT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB15ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 436

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 183 aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
           ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 290 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 250
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>emb|BX826612.1|CNS0A40N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB47ZF05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1224

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 183  aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
            ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 1066 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 1026
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>gb|AY086463.1| Arabidopsis thaliana clone 25253 mRNA, complete sequence
          Length = 1227

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 183  aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
            ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 1087 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 1047
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>gb|BT020609.1| Arabidopsis thaliana At4g01560 gene, complete cds
          Length = 1032

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 183  aaccttctcctgctcgtgtccaggtcgggcttgtgaaccca 223
            ||||||||||||||||||||||  || ||||| ||||||||
Sbjct: 1022 aaccttctcctgctcgtgtccatttcaggcttatgaaccca 982
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>gb|AC148870.2| Chlamydomonas reinhardtii clone cr-13O11, complete sequence
          Length = 56858

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 421 agtctcgctggttatggaaggtcacaactcgtcggccgcggaa 463
           |||| |||||||| ||||||||||| ||||| || ||||||||
Sbjct: 95  agtcgcgctggttgtggaaggtcaccactcgccgcccgcggaa 53
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>emb|CR388002.6| Zebrafish DNA sequence from clone DKEY-75M8 in linkage group 1,
             complete sequence
          Length = 228120

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 165   gcgcaaaatcacaggaaaaaccttct 190
             ||||||||||||||||||||| ||||
Sbjct: 17486 gcgcaaaatcacaggaaaaacattct 17461
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>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4
          Length = 198697

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 183   aaccttctcctgctcgtgtcca 204
             ||||||||||||||||||||||
Sbjct: 99841 aaccttctcctgctcgtgtcca 99862
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>gb|AF096370.1|F11O4 Arabidopsis thaliana BAC F11O4
          Length = 72872

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 183  aaccttctcctgctcgtgtcca 204
            ||||||||||||||||||||||
Sbjct: 3736 aaccttctcctgctcgtgtcca 3715
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>emb|AL445228.13| Human DNA sequence from clone RP11-382D12 on chromosome 1 Contains a
             novel gene, the 5' end of the C1orf21 gene for chromosome
             1 open reading frame 21 and a CpG island, complete
             sequence
          Length = 116252

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 361   tcgaaacaattttcttttctt 381
             |||||||||||||||||||||
Sbjct: 19977 tcgaaacaattttcttttctt 19957
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>emb|AL392047.11| Human DNA sequence from clone RP11-189M8 on chromosome 10, complete
             sequence
          Length = 59314

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 372   ttcttttctttctcctcaaag 392
             |||||||||||||||||||||
Sbjct: 57486 ttcttttctttctcctcaaag 57506
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>emb|AL138775.6| Human DNA sequence from clone RP5-933E2 on chromosome 10 Contains a
           novel gene, complete sequence
          Length = 115304

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 372 ttcttttctttctcctcaaag 392
           |||||||||||||||||||||
Sbjct: 172 ttcttttctttctcctcaaag 192
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>gb|AF361371.1|AF361371 Escherichia coli O104 antigen gene cluster, complete sequence
          Length = 12105

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 473  ttgagggaaaagagattgtat 493
            |||||||||||||||||||||
Sbjct: 2132 ttgagggaaaagagattgtat 2152
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>ref|NM_001002160.1| Danio rerio zgc:86604 (zgc:86604), mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 211  gcttgtgaacccactcgtactcccc 235
            ||||||||||||||||||| |||||
Sbjct: 1080 gcttgtgaacccactcgtattcccc 1056
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>gb|BC071307.1| Danio rerio zgc:86604, mRNA (cDNA clone MGC:86604 IMAGE:6892081),
            complete cds
          Length = 1551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 211  gcttgtgaacccactcgtactcccc 235
            ||||||||||||||||||| |||||
Sbjct: 1080 gcttgtgaacccactcgtattcccc 1056
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>gb|AF479638.1| Ovine lentivirus strain P1OLV, complete genome
          Length = 9189

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 attttcttttctttctcctc 388
           ||||||||||||||||||||
Sbjct: 883 attttcttttctttctcctc 864
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>gb|AC135671.3| Mus musculus BAC clone RP23-440D14 from chromosome 17, complete sequence
          Length = 188307

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    aattttcttttctttctcct 387
              ||||||||||||||||||||
Sbjct: 111203 aattttcttttctttctcct 111184
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>emb|CT009545.5| M.truncatula DNA sequence from clone MTH2-107B14 on chromosome 3,
             complete sequence
          Length = 96467

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gtgatgacgaaaaaatatat 420
             ||||||||||||||||||||
Sbjct: 76721 gtgatgacgaaaaaatatat 76740
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>gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) gene, complete cds;
             alternatively spliced isoforms
          Length = 219836

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tcttttctttctcctcaaag 392
             ||||||||||||||||||||
Sbjct: 67354 tcttttctttctcctcaaag 67335
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>ref|XM_739421.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001426.02.0)
            partial mRNA
          Length = 3582

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  gaaacaattttcttttcttt 382
            ||||||||||||||||||||
Sbjct: 1575 gaaacaattttcttttcttt 1594
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>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 155643

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 363    gaaacaattttcttttctttctcc 386
              ||||||||| ||||||||||||||
Sbjct: 136291 gaaacaattatcttttctttctcc 136268
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>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete
              sequence
          Length = 253924

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    aattttcttttctttctcct 387
              ||||||||||||||||||||
Sbjct: 227453 aattttcttttctttctcct 227434
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>emb|AL358777.12| Human DNA sequence from clone RP11-421M1 on chromosome 6 Contains the
              gene for a novel glucosaminyl (N-acetyl) transferase family
              protein, the 3' end of the GCNT2 gene for glucosaminyl
              (N-acetyl) transferase 2 I-branching enzyme, the gene for a
              novel protein similar to GCNT2, a novel gene, the gene for
              PAK/PLC-interacting protein 1, the gene for a novel protein
              similar to PTD011 and four CpG islands, complete sequence
          Length = 155359

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    aacaattttcttttctttct 384
              ||||||||||||||||||||
Sbjct: 130377 aacaattttcttttctttct 130358
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>emb|AL031290.1|HS774I24 Human DNA sequence from clone RP4-774I24 on chromosome 1q24.1-24.3
             Contains the 3' end of the PLAC3 gene for
             placenta-specific 3 (PLAC3) and the 3' end of the ASTN
             gene for astrotactin, complete sequence
          Length = 121780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   gaaacaattttcttttcttt 382
             ||||||||||||||||||||
Sbjct: 18090 gaaacaattttcttttcttt 18071
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>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 147660

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 363    gaaacaattttcttttctttctcc 386
              ||||||||| ||||||||||||||
Sbjct: 142118 gaaacaattatcttttctttctcc 142141
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>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence
          Length = 184805

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   attttcttttctttctcctc 388
             ||||||||||||||||||||
Sbjct: 51622 attttcttttctttctcctc 51641
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>emb|BX927402.13| Zebrafish DNA sequence from clone CH211-262G12 in linkage group 10,
             complete sequence
          Length = 155963

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   tttcttttctttctcctcaaagat 394
             |||||||||||||| |||||||||
Sbjct: 71115 tttcttttctttcttctcaaagat 71138
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>gb|AF484686.1| Nuclearia moebiusi 18S small subunit ribosomal RNA, partial sequence;
            internal transcribed spacer 1, 5.8S ribosomal RNA and
            internal transcribed spacer 2, complete sequence; and 28S
            large subunit ribosomal RNA, partial sequence
          Length = 3018

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  attttcttttctttctcctc 388
            ||||||||||||||||||||
Sbjct: 2364 attttcttttctttctcctc 2345
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>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence
          Length = 167590

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    gaaacaattttcttttcttt 382
              ||||||||||||||||||||
Sbjct: 141748 gaaacaattttcttttcttt 141767
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>gb|AC069302.4| Homo sapiens BAC clone RP11-322J23 from 4, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    aattttcttttctttctcct 387
              ||||||||||||||||||||
Sbjct: 121987 aattttcttttctttctcct 122006
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>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence
          Length = 194368

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    ttttcttttctttctcctca 389
              ||||||||||||||||||||
Sbjct: 162505 ttttcttttctttctcctca 162524
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 367      caattttcttttctttctcctcaa 390
                |||||||||| |||||||||||||
Sbjct: 24744201 caattttcttgtctttctcctcaa 24744224
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 132      aacggaacagagatagaact 151
                ||||||||||||||||||||
Sbjct: 20698482 aacggaacagagatagaact 20698501
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    acaattttcttttctttctc 385
              ||||||||||||||||||||
Sbjct: 251232 acaattttcttttctttctc 251251
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>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    aacaattttcttttctttct 384
              ||||||||||||||||||||
Sbjct: 244311 aacaattttcttttctttct 244292
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 253     tcccgtgttgcaaggtttgcagcttcag 280
               |||||||||||||||||| |||| ||||
Sbjct: 1702295 tcccgtgttgcaaggtttacagcctcag 1702322
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>gb|AC167564.1| Mus musculus BAC clone RP24-224G11 from chromosome 14, complete sequence
          Length = 204945

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tgttgttacactgtccaagg 77
              ||||||||||||||||||||
Sbjct: 111576 tgttgttacactgtccaagg 111557
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 253     tcccgtgttgcaaggtttgcagcttcag 280
               |||||||||||||||||| |||| ||||
Sbjct: 1696081 tcccgtgttgcaaggtttacagcctcag 1696108
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  acaattttcttttctttctc 385
            ||||||||||||||||||||
Sbjct: 3070 acaattttcttttctttctc 3089
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0436E04
          Length = 144644

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   acaattttcttttctttctc 385
             ||||||||||||||||||||
Sbjct: 92902 acaattttcttttctttctc 92921
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>emb|BX511113.8| Zebrafish DNA sequence from clone DKEY-38J10 in linkage group 17,
              complete sequence
          Length = 191193

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    gcaaggtttgcagcttcagagtga 285
              |||||||||||||||| |||||||
Sbjct: 178220 gcaaggtttgcagcttgagagtga 178197
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>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C08
          Length = 152460

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   aacggaacagagatagaact 151
             ||||||||||||||||||||
Sbjct: 70935 aacggaacagagatagaact 70954
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>emb|CR854846.8| Zebrafish DNA sequence from clone DKEY-228N9 in linkage group 11,
            complete sequence
          Length = 202364

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 212  cttgtgaacccactcgtactcccc 235
            |||||||||||||||||| |||||
Sbjct: 2145 cttgtgaacccactcgtattcccc 2168
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>emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on chromosome 12, complete
             sequence
          Length = 240699

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   aattttcttttctttctcct 387
             ||||||||||||||||||||
Sbjct: 18226 aattttcttttctttctcct 18207
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>gb|AC156636.2| Mus musculus BAC clone RP24-401F19 from chromosome 12, complete sequence
          Length = 170370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ttttcttttctttctcctca 389
              ||||||||||||||||||||
Sbjct: 124892 ttttcttttctttctcctca 124873
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>gb|AC129975.21| Mus musculus chromosome 14, clone RP23-447I12, complete sequence
          Length = 168905

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  tgttgttacactgtccaagg 77
           ||||||||||||||||||||
Sbjct: 319 tgttgttacactgtccaagg 300
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>emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in linkage group 3, complete
              sequence
          Length = 232247

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    gaaacaattttcttttcttt 382
              ||||||||||||||||||||
Sbjct: 136710 gaaacaattttcttttcttt 136729
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>dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-44A17, complete
             sequence
          Length = 134973

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   tcttttctttctcctcaaag 392
             ||||||||||||||||||||
Sbjct: 59903 tcttttctttctcctcaaag 59922
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 367      caattttcttttctttctcctcaa 390
                |||||||||| |||||||||||||
Sbjct: 24672407 caattttcttgtctttctcctcaa 24672430
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>emb|AL672123.16| Mouse DNA sequence from clone RP23-436I3 on chromosome X, complete
              sequence
          Length = 219385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    caattttcttttctttctcc 386
              ||||||||||||||||||||
Sbjct: 215537 caattttcttttctttctcc 215518
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>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140383

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   caattttcttttctttctcctcaa 390
             |||||||||| |||||||||||||
Sbjct: 51358 caattttcttgtctttctcctcaa 51381
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>dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PAC clone:P27A22,
             CBR1-HLCS region
          Length = 171703

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   aacaattttcttttctttct 384
             ||||||||||||||||||||
Sbjct: 59497 aacaattttcttttctttct 59478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,265,755
Number of Sequences: 3902068
Number of extensions: 5265755
Number of successful extensions: 162116
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161718
Number of HSP's gapped (non-prelim): 397
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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