Clone Name | rbart40h11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467446.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1105 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1046 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 1045 gcagccatgcaccctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 987
>ref|XM_506936.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B12.9 mRNA Length = 1503 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1122 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1063 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 1062 gcagccatgcaccctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 1004
>dbj|AK104317.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C03, full insert sequence Length = 1389 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1105 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1046 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 1045 gcagccatgcaccctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 987
>dbj|AK071251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H21, full insert sequence Length = 1502 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1121 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 1062 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 1061 gcagccatgcaccctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 1003
>gb|AY104846.1| Zea mays PCO061833 mRNA sequence Length = 1380 Score = 155 bits (78), Expect = 2e-34 Identities = 111/122 (90%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||||||||| ||| |||||||||| | ||||||||| |||||||| |||||||| Sbjct: 1120 agtcaatcagactttccctcctgtgcaccgatctcctgcaggtagtgctcagcgtccaat 1061 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcacg 526 ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 1060 gcagccatgcaccctgatccagcggcagtaatggcctgacggtacttcttgtcctgcacg 1001 Query: 527 tc 528 || Sbjct: 1000 tc 999
>emb|AJ421947.1|TAE421947 Triticum aestivum mRNA for NADPH-thioredoxin reductase (ntr gene) Length = 1045 Score = 123 bits (62), Expect = 6e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||||| ||| || ||||||| || ||||||||||| |||||||| ||||||||| Sbjct: 1035 agtcaatcagtcttcccttcctgtgcgccaacctcctgcaggtagtgctccgcgtccaaa 976 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctgcacg 526 |||||||| ||||||||||| || |||||||||||||| || |||||||| ||||| ||| Sbjct: 975 gcagccatacaacctgatcctgcggcagtaatggcctggcggtacttcttgtcctgaacg 916 Query: 527 tc 528 || Sbjct: 915 tc 914
>gb|AY105128.1| Zea mays PCO155238 mRNA sequence Length = 958 Score = 113 bits (57), Expect = 6e-22 Identities = 87/97 (89%) Strand = Plus / Minus Query: 426 cctgtgcacccacctcctgcagatagtgctcggcgtccaaagcagccatgcaacctgatc 485 ||||||| || ||||||||||| |||||||| || |||| |||||||||||||||||||| Sbjct: 720 cctgtgctccaacctcctgcaggtagtgctctgcatccagagcagccatgcaacctgatc 661 Query: 486 cagcagcagtaatggcctgacgatacttcttatcctg 522 |||| |||||||||||||| || |||||||| ||||| Sbjct: 660 cagctgcagtaatggcctggcggtacttcttgtcctg 624
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 29572359 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 29572300 Query: 467 gcagccatgcaacctg 482 ||||||||||| |||| Sbjct: 29572299 gcagccatgcaccctg 29572284 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 477 aacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 29570490 aacctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 29570442
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1479_B12 Length = 127089 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 30080 agtcaatcggccttgccctcctgtgcaccgacctcctgcagatagtgctccgcgtccaaa 30021 Query: 467 gcagccatgcaacctg 482 ||||||||||| |||| Sbjct: 30020 gcagccatgcaccctg 30005 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 477 aacctgatccagcagcagtaatggcctgacgatacttcttatcctgcac 525 ||||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 28211 aacctgatccagcggcagtaatagcctggcgatacttcttgtcctgcac 28163
>dbj|AK106368.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C03, full insert sequence Length = 1383 Score = 95.6 bits (48), Expect = 1e-16 Identities = 99/116 (85%) Strand = Plus / Minus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||||| |||| | ||||||| || | |||||| || |||||||| || ||||| Sbjct: 1161 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 1102 Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcctg 522 || ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 1101 gccgccatgcaacctgatcccgcggcagtaatggcctggcgatacttcttgtcctg 1046
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 458 gcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgata 510 ||||||||||| ||||| |||||||| ||||||| ||||| ||||||||||| Sbjct: 872910 gcgtccaaagctgccatacaacctgaaccagcagaggtaatagcctgacgata 872962
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 478 acctgatccagcagcagtaatggcctgacgatacttcttatcctg 522 ||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 12694510 acctgatcccgcggcagtaatggcctggcgatacttcttgtcctg 12694554 Score = 48.1 bits (24), Expect = 0.029 Identities = 63/76 (82%) Strand = Plus / Plus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||||| |||| | ||||||| || | |||||| || |||||||| || ||||| Sbjct: 12691717 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 12691776 Query: 467 gcagccatgcaacctg 482 || ||||||||||||| Sbjct: 12691777 gccgccatgcaacctg 12691792
>dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0039F24 Length = 132107 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 478 acctgatccagcagcagtaatggcctgacgatacttcttatcctg 522 ||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct: 48031 acctgatcccgcggcagtaatggcctggcgatacttcttgtcctg 48075 Score = 48.1 bits (24), Expect = 0.029 Identities = 63/76 (82%) Strand = Plus / Plus Query: 407 agtcaatcagacttgcccacctgtgcacccacctcctgcagatagtgctcggcgtccaaa 466 |||||||||| |||| | ||||||| || | |||||| || |||||||| || ||||| Sbjct: 45238 agtcaatcagtcttgtcttcctgtgctccaatctcctgtaggtagtgctccgcatccaac 45297 Query: 467 gcagccatgcaacctg 482 || ||||||||||||| Sbjct: 45298 gccgccatgcaacctg 45313
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome Length = 791654 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 467 gcagccatgcaacctgatccagcagcagtaatggcctgacgata 510 |||||||| |||||||||||||| |||||||| || |||||||| Sbjct: 471980 gcagccatacaacctgatccagctgcagtaattgcttgacgata 471937
>ref|NM_119711.3| Arabidopsis thaliana NTR1 AT4G35460 (NTR1) mRNA, complete cds Length = 1500 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 452 tgctcggcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgatac 511 ||||| || |||||||| |||||||| || | ||| |||||||| ||||| || | |||| Sbjct: 1115 tgctctgcatccaaagctgccatgcacccagttcctgcagcagtgatggcttgcctatac 1056 Query: 512 ttcttatcctg 522 ||||||||||| Sbjct: 1055 ttcttatcctg 1045
>emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3 Length = 267050 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 467 gcagccatgcaacctgatccagcagcagtaatggc 501 |||||||| ||||| |||||||||||||||||||| Sbjct: 178485 gcagccatacaaccggatccagcagcagtaatggc 178451
>emb|BX826366.1|CNS0A2D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1293 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 452 tgctcggcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgatac 511 ||||| || |||||||| |||||||| || | ||| |||||||| ||||| || | |||| Sbjct: 1115 tgctctgcatccaaagctgccatgcacccagttcctgcagcagtgatggcttgcctatac 1056 Query: 512 ttcttatcctg 522 ||||||||||| Sbjct: 1055 ttcttatcctg 1045
>gb|BT004322.1| Arabidopsis thaliana clone RAFL16-02-L06 (R50174) putative thioredoxin reductase (NADPH) 2 (At4g35460) mRNA, complete cds Length = 1433 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 452 tgctcggcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgatac 511 ||||| || |||||||| |||||||| || | ||| |||||||| ||||| || | |||| Sbjct: 1032 tgctctgcatccaaagctgccatgcacccagttcctgcagcagtgatggcttgcctatac 973 Query: 512 ttcttatcctg 522 ||||||||||| Sbjct: 972 ttcttatcctg 962
>emb|Z23109.1|ATTHIREDB A.thaliana mRNA for NADPH thioredoxin reductase Length = 1261 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 452 tgctcggcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgatac 511 ||||| || |||||||| |||||||| || | ||| |||||||| ||||| || | |||| Sbjct: 1051 tgctctgcatccaaagctgccatgcacccagttcctgcagcagtgatggcttgcctatac 992 Query: 512 ttcttatcctg 522 ||||||||||| Sbjct: 991 ttcttatcctg 981
>ref|NM_129731.3| Arabidopsis thaliana disulfide oxidoreductase/ electron transporter/ oxidoreductase/ thioredoxin-disulfide reductase AT2G41680 mRNA, complete cds Length = 1800 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1171 caaagcagctatgcatcctgatccagcagcagt 1139
>gb|BT000516.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680/T32G6.20) mRNA, complete cds Length = 1590 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1155 caaagcagctatgcatcctgatccagcagcagt 1123
>gb|AY093250.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680) mRNA, complete cds Length = 803 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 261 caaagcagctatgcatcctgatccagcagcagt 229
>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete sequence Length = 91979 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 78015 caaagcagctatgcatcctgatccagcagcagt 78047
>gb|AY062479.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680; T32G6.20) mRNA, complete cds Length = 1802 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1188 caaagcagctatgcatcctgatccagcagcagt 1156
>gb|AY056394.1| Arabidopsis thaliana At2g41680/T32G6.20 mRNA, complete cds Length = 1783 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1168 caaagcagctatgcatcctgatccagcagcagt 1136
>emb|BX821094.1|CNS0A9Z3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL14ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 644 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 42 caaagcagctatgcatcctgatccagcagcagt 10
>emb|BX820757.1|CNS0A9JK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZD05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1726 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1161 caaagcagctatgcatcctgatccagcagcagt 1129
>emb|BX819883.1|CNS0A9GU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZF11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1356 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 798 caaagcagctatgcatcctgatccagcagcagt 766
>emb|BX820128.1|CNS0A9G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS78ZB05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1730 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 463 caaagcagccatgcaacctgatccagcagcagt 495 ||||||||| ||||| ||||||||||||||||| Sbjct: 1171 caaagcagctatgcatcctgatccagcagcagt 1139
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 466 agcagccatgcaacctgatccagcagcagtaatggcctgacgata 510 ||||||| ||||||||||||| ||||| || || ||||||||||| Sbjct: 1215392 agcagccttgcaacctgatccggcagccgtgatagcctgacgata 1215348
>emb|CR955012.2| Medicago truncatula chromosome 5 clone mth2-84f14, COMPLETE SEQUENCE Length = 117704 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 482 gatccagcagcagtaatggcctgacgatacttcttatcctg 522 ||||||||||||||||| || || | ||||||||||||||| Sbjct: 14159 gatccagcagcagtaatagcttgtctatacttcttatcctg 14119
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 160 ttccaccaatgataaatatgaat 182 ||||||||||||||||||||||| Sbjct: 108155 ttccaccaatgataaatatgaat 108177
>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence Length = 129742 Score = 44.1 bits (22), Expect = 0.46 Identities = 34/38 (89%) Strand = Plus / Minus Query: 485 ccagcagcagtaatggcctgacgatacttcttatcctg 522 |||||||||||||| ||||| | |||||||||||||| Sbjct: 5063 ccagcagcagtaatagcctgtctgtacttcttatcctg 5026
>gb|AC149427.1| Populus trichocarpa clone Pop1-065A01, complete sequence Length = 84222 Score = 44.1 bits (22), Expect = 0.46 Identities = 34/38 (89%) Strand = Plus / Minus Query: 485 ccagcagcagtaatggcctgacgatacttcttatcctg 522 |||||||||||||| ||||| | |||||||||||||| Sbjct: 51433 ccagcagcagtaatagcctgtctgtacttcttatcctg 51396
>gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, complete sequence Length = 183113 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 166 caatgataaatatgaatcattt 187 |||||||||||||||||||||| Sbjct: 590 caatgataaatatgaatcattt 569
>gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, complete sequence Length = 162774 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 caatgataaatatgaatcattt 187 |||||||||||||||||||||| Sbjct: 102148 caatgataaatatgaatcattt 102169
>emb|AL672056.4| Mouse DNA sequence from clone RP23-467O2 on chromosome X, complete sequence Length = 150695 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 atgataaatatgaatcatttcc 189 |||||||||||||||||||||| Sbjct: 126180 atgataaatatgaatcatttcc 126201
>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence Length = 203962 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aataataatgtgatttcccca 135 ||||||||||||||||||||| Sbjct: 154707 aataataatgtgatttcccca 154727
>gb|AY504728.1| Barnadesia caryophylla NADH dehydrogenase (ndhF) gene, partial cds; chloroplast Length = 664 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 530 agaaaaatacaagaacatata 510
>gb|AY504727.1| Dasyphyllum reticulatum NADH dehydrogenase (ndhF) gene, partial cds; chloroplast Length = 641 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 536 agaaaaatacaagaacatata 516
>gb|AC115860.9| Mus musculus chromosome 1, clone RP24-290C11, complete sequence Length = 240785 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 aataataatgtgatttcccca 135 ||||||||||||||||||||| Sbjct: 203942 aataataatgtgatttcccca 203922
>gb|AC116404.12| Mus musculus chromosome 5, clone RP23-143M9, complete sequence Length = 211381 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aataataatgtgatttcccca 135 ||||||||||||||||||||| Sbjct: 11866 aataataatgtgatttcccca 11886
>gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complete sequence Length = 163985 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aataataatgtgatttcccca 135 ||||||||||||||||||||| Sbjct: 143591 aataataatgtgatttcccca 143611
>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete sequence Length = 185984 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 418 cttgcccacctgtgcacccacctcctgca 446 |||||||||||| ||||||||||||||| Sbjct: 66965 cttgcccacctgcccacccacctcctgca 66993
>dbj|AP002777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-640G3, complete sequence Length = 169515 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 418 cttgcccacctgtgcacccacctcctgca 446 |||||||||||| ||||||||||||||| Sbjct: 149742 cttgcccacctgcccacccacctcctgca 149770
>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence Length = 211924 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 aataataatgtgatttcccca 135 ||||||||||||||||||||| Sbjct: 44716 aataataatgtgatttcccca 44696
>gb|L39392.1|DPUCPNDHF Dasyphyllum argenteum chloroplast NADH dehydrogenase (ndhF) gene, complete cds Length = 2235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 2190 agaaaaatacaagaacatata 2170
>gb|L39396.1|DOICPNDHF Doniophyton anomalum chloroplast NADH dehydrogenase (ndhF) gene, complete cds Length = 2235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 2190 agaaaaatacaagaacatata 2170
>gb|L39393.1|CQRCPNDHF Chuquiraga jussieui chloroplast NADH dehydrogenase (ndhF) gene, complete cds Length = 2235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 2190 agaaaaatacaagaacatata 2170
>gb|L39394.1|BRICPNDHF Barnadesia caryophylla chloroplast NADH dehydrogenase (ndhF) gene, complete cds Length = 2235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 agaaaaatacaagaacatata 85 ||||||||||||||||||||| Sbjct: 2190 agaaaaatacaagaacatata 2170
>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome Length = 697724 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Minus Query: 458 gcgtccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgata 510 ||||| |||||||||||||| || |||||| ||| ||||| || |||||||| Sbjct: 569457 gcgtctaaagcagccatgcatccaaatccagaagctgtaattgcttgacgata 569405
>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete sequence Length = 188804 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 423 ccacctgtgcacccacctcctgcag 447 ||||||||||| ||||||||||||| Sbjct: 129083 ccacctgtgcagccacctcctgcag 129059
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 470 gccatgcaacctgatccagcagcagtaatggcctgacgata 510 |||||||| |||| ||||||| ||||||||||||||||| Sbjct: 2175532 gccatgcagcctgtaccagcagatgtaatggcctgacgata 2175492
>gb|L36129.1|HNNNTR Helianthus annuus NADPH thioredoxin reductase mRNA, 3' end Length = 491 Score = 42.1 bits (21), Expect = 1.8 Identities = 54/65 (83%) Strand = Plus / Minus Query: 461 tccaaagcagccatgcaacctgatccagcagcagtaatggcctgacgatacttcttatcc 520 |||| ||| ||||||||||| || || |||||||||| ||||| | || ||||||||| Sbjct: 302 tccagagctgccatgcaaccagagcctgcagcagtaaccgcctgcctgtatttcttatcc 243 Query: 521 tgcac 525 ||||| Sbjct: 242 tgcac 238
>gb|AY728222.1| Plethodon petraeus mitochondrion, complete genome Length = 19235 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cactccaaacatagaaaaat 72 |||||||||||||||||||| Sbjct: 9388 cactccaaacatagaaaaat 9407
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 445 cagatagtgctcggcgtccaaagcagccatgcaacc 480 ||||||| |||||||||| | |||||||||||||| Sbjct: 519711 cagatagcgctcggcgtcgagggcagccatgcaacc 519676
>gb|AC124731.5| Mus musculus BAC clone RP23-287B7 from 3, complete sequence Length = 201529 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 atccagcagcagtaatggcc 502 |||||||||||||||||||| Sbjct: 90312 atccagcagcagtaatggcc 90331
>gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, complete sequence Length = 120141 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tgcccacctgtgcacccacc 439 |||||||||||||||||||| Sbjct: 42071 tgcccacctgtgcacccacc 42090
>gb|AY029520.1| Fiji disease virus RNA-dependent RNA polymerase gene, complete cds Length = 4532 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tagaaaaatacaagaacata 83 |||||||||||||||||||| Sbjct: 78 tagaaaaatacaagaacata 97
>gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, complete sequence Length = 167242 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 atttccccaatgatacataagaat 150 ||||||||||||||| |||||||| Sbjct: 130177 atttccccaatgatagataagaat 130200
>emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene, two novel genes, the C9orf10 gene for chromosome 9 open reading frame 10, the 5' end of the PHF2 gene for PHD finger protein 2 and three CpG islands, complete sequence Length = 170845 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ctgtgcacccacctcctgca 446 |||||||||||||||||||| Sbjct: 61161 ctgtgcacccacctcctgca 61142
>gb|AC158149.3| Mus musculus chromosome 5, clone RP24-296L6, complete sequence Length = 155517 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacatagaaaaatacaagaa 79 |||||||||||||||||||| Sbjct: 62066 aacatagaaaaatacaagaa 62085
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 atagaaaaatacaagaacatatatatct 90 ||||||||| |||| ||||||||||||| Sbjct: 69033 atagaaaaaaacaacaacatatatatct 69006
>dbj|AK126368.1| Homo sapiens cDNA FLJ44404 fis, clone TUTER2001387 Length = 3359 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cagaataataatgtgatttc 131 |||||||||||||||||||| Sbjct: 795 cagaataataatgtgatttc 814
>dbj|AK158687.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K230054D19 product:unclassifiable, full insert sequence Length = 1229 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacatagaaaaatacaagaa 79 |||||||||||||||||||| Sbjct: 1071 aacatagaaaaatacaagaa 1090
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 gcggctttcggcgagctgat 384 |||||||||||||||||||| Sbjct: 346110 gcggctttcggcgagctgat 346091
>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cagaataataatgtgatttc 131 |||||||||||||||||||| Sbjct: 278628 cagaataataatgtgatttc 278609
>dbj|BS000201.1| Pan troglodytes chromosome 22 clone:PTB-047A24, map 22, complete sequences Length = 165662 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cagaataataatgtgatttc 131 |||||||||||||||||||| Sbjct: 37031 cagaataataatgtgatttc 37012
>gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, complete sequence Length = 141949 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacatagaaaaatacaagaa 79 |||||||||||||||||||| Sbjct: 100985 aacatagaaaaatacaagaa 101004
>gb|AC122329.4| Mus musculus BAC clone RP23-341A12 from 19, complete sequence Length = 192481 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 atttccccaatgatacataagaat 150 ||||||||||||||| |||||||| Sbjct: 35971 atttccccaatgatagataagaat 35994
>dbj|AP000688.1| Homo sapiens genomic DNA, chromosome 21q22.2, PAC clone:P27A22, CBR1-HLCS region Length = 171703 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cagaataataatgtgatttc 131 |||||||||||||||||||| Sbjct: 93814 cagaataataatgtgatttc 93795
>dbj|AB003151.1| Homo sapiens DNA, chromosome 21q22.2, PAC clone 25P16 complete sequence, encoding carbonyl reductase and carbonyl reductase 3 (complete cds) Length = 170529 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cagaataataatgtgatttc 131 |||||||||||||||||||| Sbjct: 28636 cagaataataatgtgatttc 28617
>dbj|AP005204.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-340P19, complete sequence Length = 157244 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tccaaacatagaaaaataca 75 |||||||||||||||||||| Sbjct: 70005 tccaaacatagaaaaataca 69986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,372,207 Number of Sequences: 3902068 Number of extensions: 5372207 Number of successful extensions: 114905 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114642 Number of HSP's gapped (non-prelim): 263 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)