ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
2dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
3gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
6gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence 52 0.002
7gb|AY106784.1| Zea mays PCO100577 mRNA sequence 52 0.002
8ref|NM_184996.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.11
10gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 46 0.11
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
12dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
13dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
14gb|AC008601.7| Homo sapiens chromosome 5 clone CTB-105L4, comple... 46 0.11
15gb|CP000302.1| Shewanella denitrificans OS217, complete genome 44 0.43
16ref|NM_129030.2| Arabidopsis thaliana FAH1 (FATTY ACID HYDROXYLA... 42 1.7
17ref|XM_363498.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.7
18gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1... 42 1.7
19emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chr... 42 1.7
20gb|BT000482.1| Arabidopsis thaliana fatty acid hydroxylase (FAH1... 42 1.7
21gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, comp... 42 1.7
22gb|AY050326.1| Arabidopsis thaliana At2g34770/T29F13.2 mRNA, com... 42 1.7
23emb|AJ877899.1| Human immunodeficiency virus type 1 subtype A pr... 42 1.7
24gb|AF021804.1|AF021804 Arabidopsis thaliana fatty acid hydroxyla... 42 1.7
25ref|NM_115054.2| Arabidopsis thaliana RNA binding / nucleic acid... 40 6.7
26ref|NM_001035763.1| Arabidopsis thaliana RNA binding / nucleic a... 40 6.7
27gb|AC091319.5| Homo sapiens BAC clone RP11-85N14 from 7, complet... 40 6.7
28gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosom... 40 6.7
29gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, comple... 40 6.7
30emb|AL122014.27|HSDJ874H1 Human DNA sequence from clone RP5-874H... 40 6.7
31gb|AY080846.1| Arabidopsis thaliana unknown protein (At3g51950) ... 40 6.7
32emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on ch... 40 6.7
33emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BA... 40 6.7
34dbj|AK123513.1| Homo sapiens cDNA FLJ41519 fis, clone BRTHA20123... 40 6.7
35ref|NM_001027786.1| Caenorhabditis elegans Y82E9BL.18 (Y82E9BL.1... 40 6.7
36emb|BX825099.1|CNS0A4VD Arabidopsis thaliana Full-length cDNA Co... 40 6.7
37dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15,... 40 6.7
38gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 40 6.7
39emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-8... 40 6.7
40dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.7
41dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.7
42gb|AC087081.2| Caenorhabditis elegans cosmid Y82E9BL, complete s... 40 6.7
43emb|AL805907.5| Mouse DNA sequence from clone RP23-262M20 on chr... 40 6.7
44dbj|AP000965.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 6.7 
>dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G06, full
           insert sequence
          Length = 1392

 Score =  129 bits (65), Expect = 9e-27
 Identities = 116/133 (87%)
 Strand = Plus / Minus

                                                                       
Query: 334 tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 393
           ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 871 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 812

                                                                       
Query: 394 ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagat 453
           ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 811 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttcttgaggt 752

                        
Query: 454 attttgctggatc 466
            |||| |||||||
Sbjct: 751 gttttcctggatc 739
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>dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D02, full
           insert sequence
          Length = 1438

 Score =  129 bits (65), Expect = 9e-27
 Identities = 116/133 (87%)
 Strand = Plus / Minus

                                                                       
Query: 334 tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 393
           ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 893 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 834

                                                                       
Query: 394 ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagat 453
           ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 833 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttcttgaggt 774

                        
Query: 454 attttgctggatc 466
            |||| |||||||
Sbjct: 773 gttttcctggatc 761
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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                         
Query: 334   tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 393
             ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 63900 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 63841

                                                                   
Query: 394   ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 447
             ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 63840 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 63787
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 334      tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 393
                ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 26938933 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 26938874

                                                                      
Query: 394      ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 447
                ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 26938873 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 26938820
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 1e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 334      tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 393
                ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 26867103 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 26867044

                                                                      
Query: 394      ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 447
                ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 26867043 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 26866990
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>gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence
          Length = 1084

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 402 aagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagatattttgct 461
           ||||||||||  || ||||||||||||||||| || || ||  ||||||||| |||||||
Sbjct: 740 aagcccttgtcctggattctgaagtgatggttgaggtgatacctcttgagatgttttgct 681

             
Query: 462 gg 463
           ||
Sbjct: 680 gg 679
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>gb|AY106784.1| Zea mays PCO100577 mRNA sequence
          Length = 1072

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 402 aagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagatattttgct 461
           ||||||||||  || ||||||||||||||||| || || ||  ||||||||| |||||||
Sbjct: 797 aagcccttgtcctggattctgaagtgatggttgaggtgatacctcttgagatgttttgct 738

             
Query: 462 gg 463
           ||
Sbjct: 737 gg 736
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>ref|NM_184996.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 714

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 399 ccaaagcccttgttttgaattctgaagtgatggtt 433
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 641 ccaaagcctttgttttggattctgaagtggtggtt 607
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 399      ccaaagcccttgttttgaattctgaagtgatggtt 433
                |||||||| |||||||| ||||||||||| |||||
Sbjct: 32074171 ccaaagcctttgttttggattctgaagtggtggtt 32074137
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 399   ccaaagcccttgttttgaattctgaagtgatggtt 433
             |||||||| |||||||| ||||||||||| |||||
Sbjct: 75296 ccaaagcctttgttttggattctgaagtggtggtt 75262
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 399      ccaaagcccttgttttgaattctgaagtgatggtt 433
                |||||||| |||||||| ||||||||||| |||||
Sbjct: 32164683 ccaaagcctttgttttggattctgaagtggtggtt 32164649
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>dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118H09, full
           insert sequence
          Length = 1229

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 399 ccaaagcccttgttttgaattctgaagtgatggtt 433
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 861 ccaaagcctttgttttggattctgaagtggtggtt 827
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>dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F06, full
           insert sequence
          Length = 1045

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 399 ccaaagcccttgttttgaattctgaagtgatggtt 433
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 760 ccaaagcctttgttttggattctgaagtggtggtt 726
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>gb|AC008601.7| Homo sapiens chromosome 5 clone CTB-105L4, complete sequence
          Length = 106641

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 84    aaaaattatactggacaccaaca 106
             |||||||||||||||||||||||
Sbjct: 46154 aaaaattatactggacaccaaca 46176
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 378     tcccacagggtcgatgttattc 399
               ||||||||||||||||||||||
Sbjct: 1271586 tcccacagggtcgatgttattc 1271607
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>ref|NM_129030.2| Arabidopsis thaliana FAH1 (FATTY ACID HYDROXYLASE 1); catalytic
           AT2G34770 (FAH1) mRNA, complete cds
          Length = 1142

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 393 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 452
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 886 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 827

            
Query: 453 t 453
           |
Sbjct: 826 t 826
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>ref|XM_363498.1| Magnaporthe grisea 70-15 hypothetical protein (MG01424.4) partial
           mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 390 gatgttattccaaagcccttg 410
           |||||||||||||||||||||
Sbjct: 569 gatgttattccaaagcccttg 549
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>gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1L) gene, complete
            cds
          Length = 37676

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 395  tattccaaagcccttgttttg 415
            |||||||||||||||||||||
Sbjct: 1002 tattccaaagcccttgttttg 982
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>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the
             CHC1L gene for chromosome condensation 1-like, 3 novel
             genes and a CpG island, complete sequence
          Length = 114519

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   tattccaaagcccttgttttg 415
             |||||||||||||||||||||
Sbjct: 36116 tattccaaagcccttgttttg 36136
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>gb|BT000482.1| Arabidopsis thaliana fatty acid hydroxylase (FAH1)
           (At2g34770/T29F13.2) mRNA, complete cds
          Length = 714

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 393 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 452
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 647 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 588

            
Query: 453 t 453
           |
Sbjct: 587 t 587
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>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence
          Length = 158576

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 146   aaaaacctctctgtacacatgacaa 170
             |||| ||||||||||||||||||||
Sbjct: 89173 aaaaccctctctgtacacatgacaa 89149
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>gb|AY050326.1| Arabidopsis thaliana At2g34770/T29F13.2 mRNA, complete cds
          Length = 827

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 393 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 452
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 687 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 628

            
Query: 453 t 453
           |
Sbjct: 627 t 627
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>emb|AJ877899.1| Human immunodeficiency virus type 1 subtype A proviral partial
           gp120 gene for envelope glycoprotein gp120, isolate
           97DC.EQTB69 1997
          Length = 584

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 438 tggtatttcttgagatatttt 458
           |||||||||||||||||||||
Sbjct: 28  tggtatttcttgagatatttt 8
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>gb|AF021804.1|AF021804 Arabidopsis thaliana fatty acid hydroxylase Fah1p (FAH1) mRNA,
           complete cds
          Length = 714

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 393 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 452
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 647 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 588

            
Query: 453 t 453
           |
Sbjct: 587 t 587
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>ref|NM_115054.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G51950
           transcript variant AT3G51950.1 mRNA, complete cds
          Length = 2486

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 aacctctctgtacacatgacaaca 172
           |||||||||||||||| |||||||
Sbjct: 383 aacctctctgtacacaagacaaca 406
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>ref|NM_001035763.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G51950
           transcript variant AT3G51950.2 mRNA, complete cds
          Length = 2608

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 aacctctctgtacacatgacaaca 172
           |||||||||||||||| |||||||
Sbjct: 417 aacctctctgtacacaagacaaca 440
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>gb|AC091319.5| Homo sapiens BAC clone RP11-85N14 from 7, complete sequence
          Length = 14196

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   aaaacttacaaattatatca 57
            ||||||||||||||||||||
Sbjct: 2160 aaaacttacaaattatatca 2141
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>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete
             sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   tggcattgcaaggtggtaca 323
             ||||||||||||||||||||
Sbjct: 16115 tggcattgcaaggtggtaca 16134
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>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence
          Length = 203804

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    gatggttaagatggtatttc 446
              ||||||||||||||||||||
Sbjct: 114144 gatggttaagatggtatttc 114125
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>emb|AL122014.27|HSDJ874H1 Human DNA sequence from clone RP5-874H1 on chromosome 11p12-14.1
             Contains STSs and GSSs, complete sequence
          Length = 98061

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   tattccaaagcccttgtttt 414
             ||||||||||||||||||||
Sbjct: 45717 tattccaaagcccttgtttt 45736
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>gb|AY080846.1| Arabidopsis thaliana unknown protein (At3g51950) mRNA, complete cds
          Length = 2366

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 aacctctctgtacacatgacaaca 172
           |||||||||||||||| |||||||
Sbjct: 383 aacctctctgtacacaagacaaca 406
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>emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on chromosome 11 Contains the
              3' end of the Hs3st3a gene for heparan sulfate
              (glucosamine) 3-O-sulfotransferase 3A and a CpG island,
              complete sequence
          Length = 153658

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    cctctctgtacacatgacaacata 174
              ||||||||||||| ||||||||||
Sbjct: 136430 cctctctgtacacgtgacaacata 136453
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>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15
          Length = 123209

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   aacctctctgtacacatgacaaca 172
             |||||||||||||||| |||||||
Sbjct: 29543 aacctctctgtacacaagacaaca 29520
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>dbj|AK123513.1| Homo sapiens cDNA FLJ41519 fis, clone BRTHA2012392, highly  similar
            to Homo sapiens HCDI (HCDI) mRNA
          Length = 2336

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   tgcaattacttggtcccaaa 86
            ||||||||||||||||||||
Sbjct: 1109 tgcaattacttggtcccaaa 1090
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>ref|NM_001027786.1| Caenorhabditis elegans Y82E9BL.18 (Y82E9BL.18) mRNA, complete cds
          Length = 1500

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 tgaagtgatggttaagatgg 440
           ||||||||||||||||||||
Sbjct: 370 tgaagtgatggttaagatgg 351
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>emb|BX825099.1|CNS0A4VD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH9ZE06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2030

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 aacctctctgtacacatgacaaca 172
           |||||||||||||||| |||||||
Sbjct: 23  aacctctctgtacacaagacaaca 46
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>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete
             sequences
          Length = 198333

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   cttgatatctggcattgcaaggtg 318
             |||||||||||||||| |||||||
Sbjct: 65962 cttgatatctggcattacaaggtg 65985
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>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    tggcattgcaaggtggtaca 323
              ||||||||||||||||||||
Sbjct: 193917 tggcattgcaaggtggtaca 193936
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>emb|AL132800.4|CNS01DTM Human chromosome 14 DNA sequence BAC R-80A15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185251

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     tgcaattacttggtcccaaa 86
              ||||||||||||||||||||
Sbjct: 126374 tgcaattacttggtcccaaa 126355
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>dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, section 32/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 295  cttgatatctggcattgcaaggtg 318
            |||||||||||||||| |||||||
Sbjct: 6624 cttgatatctggcattacaaggtg 6647
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>dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691L4, complete
             sequence
          Length = 181140

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   ttgttttgaattctgaagtg 427
             ||||||||||||||||||||
Sbjct: 99058 ttgttttgaattctgaagtg 99039
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>gb|AC087081.2| Caenorhabditis elegans cosmid Y82E9BL, complete sequence
          Length = 50455

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   tgaagtgatggttaagatgg 440
             ||||||||||||||||||||
Sbjct: 24512 tgaagtgatggttaagatgg 24493
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>emb|AL805907.5| Mouse DNA sequence from clone RP23-262M20 on chromosome X, complete
              sequence
          Length = 221439

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     tggtaaaacttacaaattatatca 57
              ||||||||| ||||||||||||||
Sbjct: 166794 tggtaaaacatacaaattatatca 166817
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>dbj|AP000965.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B875P4,
             LL56-APP region, complete sequence
          Length = 88046

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   cttgatatctggcattgcaaggtg 318
             |||||||||||||||| |||||||
Sbjct: 64808 cttgatatctggcattacaaggtg 64831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,918,731
Number of Sequences: 3902068
Number of extensions: 3918731
Number of successful extensions: 77638
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77497
Number of HSP's gapped (non-prelim): 141
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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