ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HQGT_ARATH (Q9M156) Probable hydroquinone glucosyltransferase (E... 32 1.4
2APGM_GEOSL (Q74C57) Probable 2,3-bisphosphoglycerate-independent... 31 1.9
3MCE1_CANGA (Q6FQ31) mRNA capping enzyme alpha subunit (mRNA guan... 30 3.2
4SYC_BACCR (Q81J59) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 30 4.2
5EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril int... 30 4.2
6PYRC_LACPL (P77884) Dihydroorotase (EC 3.5.2.3) (DHOase) 30 4.2
7ACCN3_RAT (O35240) Amiloride-sensitive cation channel 3 (Acid-se... 30 5.5
8NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kin... 30 5.5
9VMAT2_HUMAN (Q05940) Synaptic vesicular amine transporter (Monoa... 30 5.5
10ZAN_HUMAN (Q9Y493) Zonadhesin precursor 30 5.5
11PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate p... 29 7.2
12FLII_HUMAN (Q13045) Protein flightless-1 homolog 29 7.2
13EMIL1_HUMAN (Q9Y6C2) EMILIN-1 precursor (Elastin microfibril int... 29 7.2
14HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4) 29 9.3
15BUR1_CANAL (Q9Y7W4) Serine/threonine-protein kinase BUR1 (EC 2.7... 29 9.3

>HQGT_ARATH (Q9M156) Probable hydroquinone glucosyltransferase (EC 2.4.1.218)|
           (Arbutin synthase)
          Length = 480

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -2

Query: 452 KHLTDIRDLNFLMCRAIENP----QLTTASALRTSLVSVFEEPATFDVSDLQSKAGVEDY 285
           K L  +  L      A E P    Q T   +L +S+ SVF  P   D++DL S   +E  
Sbjct: 28  KRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPV--DLTDLSSSTRIESR 85

Query: 284 VCCATVHGIGPSISVFDSIRDGG 216
           +             VFDS  +GG
Sbjct: 86  ISLTVTRSNPELRKVFDSFVEGG 108



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>APGM_GEOSL (Q74C57) Probable 2,3-bisphosphoglycerate-independent|
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM)
          Length = 399

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 250 DGPMPCTVAQQT*SSTPALLCRSDTSKVAGSSNTETSDVRSAEAVVSCGFSMARHM 417
           D P P  +   T +  P +L   +TS+ AG +  +    RSA  VV  GF +   M
Sbjct: 341 DHPTPLRLKTHTDAPVPFVLFSGETSENAGVAGYDEESARSAGLVVEDGFRLMEMM 396



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>MCE1_CANGA (Q6FQ31) mRNA capping enzyme alpha subunit (mRNA|
           guanylyltransferase) (EC 2.7.7.50) (GTP--RNA
           guanylyltransferase) (GTase)
          Length = 449

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 434 RDLNFLMCRAIENPQLTTASALRTSLVSVFEEPATFDVSDLQSKAGVEDYVCCATVHGI 258
           +DL  L+C+ + +P        + S      +P +F  SD++ K   +DY  C    G+
Sbjct: 20  QDLKMLVCKLLNSP--------KPSKTFPGSQPVSFQHSDIRDKLVAQDYYVCEKTDGL 70



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>SYC_BACCR (Q81J59) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 465

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
 Frame = -2

Query: 494 KRCHDAYSNAKHNKKHLTDIRDLNFLMCRAIE----------NPQLTTASALRTSLVSVF 345
           +R   AY N KH  +  TD+ D N      IE          N    TA+A+ T L +V 
Sbjct: 317 ERIKTAYGNLKHRMESSTDLTDHNEKWLAEIEKFQTAFEEAMNDDFNTANAI-TELYNVA 375

Query: 344 EEPATFDVSDLQSKAGVEDYV 282
                + + +  SK  +E YV
Sbjct: 376 NHANQYLLEEHTSKVVIEAYV 396



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>EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril interface-located|
           protein 1) (Elastin microfibril interfacer 1)
          Length = 1017

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 252 RANAVHSGAADIVLHTSL-ALQIRHVEGRRLLEHGDERCPECGG 380
           R +A    AA+I+L  +L A Q+  +EG  L   GDE C  CGG
Sbjct: 546 RMDAQEETAAEILLRLNLTAAQLSQLEGL-LQARGDEGCGACGG 588



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>PYRC_LACPL (P77884) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 430

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 416 MCRAIENPQLTTASALRTSLVSVFEEPATFDVSDLQSKAGVEDYVCCATVHGIGPS-ISV 240
           M   I+N Q+  A  L+T+ + + E         L  + G  D+V CA  H + P  + V
Sbjct: 1   MTTLIKNAQVWQAGQLQTTDILIAEGRIKAIGHQLHDQFGPADHVICADQHFVSPGFVDV 60

Query: 239 FDSIRDGG 216
              +RD G
Sbjct: 61  HVHLRDPG 68



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>ACCN3_RAT (O35240) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC)
          Length = 533

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 22  WQRRGWSFRSSLRVVQGRLHALFTHVISSSLGLLP---SCKIIFTLSSTSCICLL 177
           W RR    RS   ++Q  L+   THV   SLG  P    C +  TLS++   C L
Sbjct: 475 WNRRSAQKRSGNTLLQEELNGHRTHVPHLSLGPRPPTTPCAVTKTLSASHRTCYL 529



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>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor|
            protein 550) (AKAP 550) (dAKAP550)
          Length = 3584

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 474  QQRQAQQEAPHRHP-RPQLPHVSGHRE 397
            QQ+Q QQ+ PH HP +P    ++GH++
Sbjct: 2115 QQQQQQQQQPHYHPHQPHYGLINGHQQ 2141



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>VMAT2_HUMAN (Q05940) Synaptic vesicular amine transporter (Monoamine|
           transporter) (Vesicular amine transporter 2) (VAT2)
           (Solute carrier family 18 member 2)
          Length = 514

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +3

Query: 99  HQFITWVAPFV*NHLHLVKHLMYLSPGMQRRGVHARAIQPAIPDRVEYTDRRANAVHSGA 278
           +  +T V P + ++L+ +KH    +     R VH  +I  +      Y D       +  
Sbjct: 34  NMLLTVVVPIIPSYLYSIKHEKNATEIQTARPVHTASISDSFQSIFSYYDNSTMVTGNAT 93

Query: 279 ADIVLH 296
            D+ LH
Sbjct: 94  RDLTLH 99



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>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 265  TALARR-SVYSTLSGMAG----WIARACTPLRCIPGDRYMRC 155
            TAL R    Y++L   AG    W  R   P+RC PG  Y  C
Sbjct: 1780 TALCRSLQAYASLCAQAGQAPAWRNRTFCPMRCPPGSSYSPC 1821



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>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = +1

Query: 13   SVIWQRRGWSFRSSLRVVQGRLHALFTHVISSSLGLLPSCKIIFTLSSTSCICLLECSGE 192
            ++ W +RG S  S  ++V  RL      V  +  G    C +     S     ++   G 
Sbjct: 2564 TITWYKRGGSLPSRHQIVGSRLR--IPQVTPADSGEY-VCHVSNGAGSRETSLIVTIQGS 2620

Query: 193  GYMHAQS-NPPSLIESN--TLIDG---PMPCTVAQQ 282
            G  H  S +PP  IES+  T+++G    + C VA+Q
Sbjct: 2621 GSSHVPSVSPPIRIESSSPTVVEGQTLDLNCVVARQ 2656



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>FLII_HUMAN (Q13045) Protein flightless-1 homolog|
          Length = 1269

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = +1

Query: 118  LLPSCKIIFTLSSTSCICLLECSGEGYMHAQSNPPSLIESNTLIDGPMPCTVAQQT*SST 297
            L+P  +++ +L  T C+ +L+C  + ++      P L+ +  L  G   C +  +   +T
Sbjct: 759  LMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHAT 818

Query: 298  PALLCRSDTSKVAGSSNTETSDV------RSAEAVV 387
             +       ++V  +      DV      R+AEAV+
Sbjct: 819  VSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVL 854



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>EMIL1_HUMAN (Q9Y6C2) EMILIN-1 precursor (Elastin microfibril interface-located|
           protein 1) (Elastin microfibril interfacer 1)
          Length = 1016

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 252 RANAVHSGAADIVLHTSL-ALQIRHVEGRRLLEHGDERCPECGG 380
           R +A    AA+  L  +L A ++  +EG  L  HGDE C  CGG
Sbjct: 545 RVDAQDETAAEFTLRLNLTAARLGQLEGL-LQAHGDEGCGACGG 587



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>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 432 RPQLPHVSGHREPAADY 382
           +PQLPH  G REP A Y
Sbjct: 57  QPQLPHAGGGREPPASY 73



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>BUR1_CANAL (Q9Y7W4) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 746

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 16  VIWQRRGWSFRSSLRVVQGRLHALFTHVISSSLGLLPSCKIIFTLSSTSCICLLECSGEG 195
           +I++    S R+ +  ++G  + +  ++ S  +GLL + KI   L    CI      G  
Sbjct: 109 MIFEEPKMSNRTDIITMRGSFYTVTPYMSSDLVGLLENPKIKLELGQIKCIMQQLLKGIQ 168

Query: 196 YMHAQ 210
           Y+H Q
Sbjct: 169 YVHNQ 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,777,417
Number of Sequences: 219361
Number of extensions: 1717484
Number of successful extensions: 5421
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5402
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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