ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190713.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 202 bits (102), Expect = 8e-49 Identities = 210/246 (85%) Strand = Plus / Minus Query: 265 tgcacagtggcgcagcagacatagtcctccacaccagccttgctctgcagatcagacacg 324 ||||| ||||||||||| || | |||||||| || ||||||||||||||||| || | | Sbjct: 1292 tgcacggtggcgcagcacacgaattcctccacgccggccttgctctgcagatcggagagg 1233 Query: 325 tcgaaggtcgccggctcctcgaacacggagacgagcgatgtccggagtgcggaggccgta 384 ||| | | |||||||||||||||||||||||| || |||||||| || ||| |||| Sbjct: 1232 tcgtacaccaccggctcctcgaacacggagacgaccgccgtccggagcgcagagcccgtc 1173 Query: 385 gtcagctgcgggttctcgatggcccgacacatgaggaagttgaggtcgcggatgtcggtg 444 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct: 1172 gtcagctgcgggttctcgattgcccggcacatgaggaagttgaggtcggcaatgtcagtg 1113 Query: 445 aggtgcttcttgttgtgcttggcgttgctgtaggcatcatggcacctcttggccagtgcc 504 |||||||||||||||| |||||||||| | || | ||| ||||||||||||||||| || Sbjct: 1112 aggtgcttcttgttgttcttggcgttggtatacgaatcttggcacctcttggccagctcc 1053 Query: 505 catagc 510 |||||| Sbjct: 1052 catagc 1047
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 202 bits (102), Expect = 8e-49 Identities = 210/246 (85%) Strand = Plus / Plus Query: 265 tgcacagtggcgcagcagacatagtcctccacaccagccttgctctgcagatcagacacg 324 ||||| ||||||||||| || | |||||||| || ||||||||||||||||| || | | Sbjct: 37301878 tgcacggtggcgcagcacacgaattcctccacgccggccttgctctgcagatcggagagg 37301937 Query: 325 tcgaaggtcgccggctcctcgaacacggagacgagcgatgtccggagtgcggaggccgta 384 ||| | | |||||||||||||||||||||||| || |||||||| || ||| |||| Sbjct: 37301938 tcgtacaccaccggctcctcgaacacggagacgaccgccgtccggagcgcagagcccgtc 37301997 Query: 385 gtcagctgcgggttctcgatggcccgacacatgaggaagttgaggtcgcggatgtcggtg 444 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct: 37301998 gtcagctgcgggttctcgattgcccggcacatgaggaagttgaggtcggcaatgtcagtg 37302057 Query: 445 aggtgcttcttgttgtgcttggcgttgctgtaggcatcatggcacctcttggccagtgcc 504 |||||||||||||||| |||||||||| | || | ||| ||||||||||||||||| || Sbjct: 37302058 aggtgcttcttgttgttcttggcgttggtatacgaatcttggcacctcttggccagctcc 37302117 Query: 505 catagc 510 |||||| Sbjct: 37302118 catagc 37302123
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 202 bits (102), Expect = 8e-49 Identities = 210/246 (85%) Strand = Plus / Plus Query: 265 tgcacagtggcgcagcagacatagtcctccacaccagccttgctctgcagatcagacacg 324 ||||| ||||||||||| || | |||||||| || ||||||||||||||||| || | | Sbjct: 13912 tgcacggtggcgcagcacacgaattcctccacgccggccttgctctgcagatcggagagg 13971 Query: 325 tcgaaggtcgccggctcctcgaacacggagacgagcgatgtccggagtgcggaggccgta 384 ||| | | |||||||||||||||||||||||| || |||||||| || ||| |||| Sbjct: 13972 tcgtacaccaccggctcctcgaacacggagacgaccgccgtccggagcgcagagcccgtc 14031 Query: 385 gtcagctgcgggttctcgatggcccgacacatgaggaagttgaggtcgcggatgtcggtg 444 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct: 14032 gtcagctgcgggttctcgattgcccggcacatgaggaagttgaggtcggcaatgtcagtg 14091 Query: 445 aggtgcttcttgttgtgcttggcgttgctgtaggcatcatggcacctcttggccagtgcc 504 |||||||||||||||| |||||||||| | || | ||| ||||||||||||||||| || Sbjct: 14092 aggtgcttcttgttgttcttggcgttggtatacgaatcttggcacctcttggccagctcc 14151 Query: 505 catagc 510 |||||| Sbjct: 14152 catagc 14157
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0679C12 Length = 153666 Score = 202 bits (102), Expect = 8e-49 Identities = 210/246 (85%) Strand = Plus / Plus Query: 265 tgcacagtggcgcagcagacatagtcctccacaccagccttgctctgcagatcagacacg 324 ||||| ||||||||||| || | |||||||| || ||||||||||||||||| || | | Sbjct: 138867 tgcacggtggcgcagcacacgaattcctccacgccggccttgctctgcagatcggagagg 138926 Query: 325 tcgaaggtcgccggctcctcgaacacggagacgagcgatgtccggagtgcggaggccgta 384 ||| | | |||||||||||||||||||||||| || |||||||| || ||| |||| Sbjct: 138927 tcgtacaccaccggctcctcgaacacggagacgaccgccgtccggagcgcagagcccgtc 138986 Query: 385 gtcagctgcgggttctcgatggcccgacacatgaggaagttgaggtcgcggatgtcggtg 444 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct: 138987 gtcagctgcgggttctcgattgcccggcacatgaggaagttgaggtcggcaatgtcagtg 139046 Query: 445 aggtgcttcttgttgtgcttggcgttgctgtaggcatcatggcacctcttggccagtgcc 504 |||||||||||||||| |||||||||| | || | ||| ||||||||||||||||| || Sbjct: 139047 aggtgcttcttgttgttcttggcgttggtatacgaatcttggcacctcttggccagctcc 139106 Query: 505 catagc 510 |||||| Sbjct: 139107 catagc 139112
>dbj|AK105529.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G08, full insert sequence Length = 1804 Score = 202 bits (102), Expect = 8e-49 Identities = 210/246 (85%) Strand = Plus / Minus Query: 265 tgcacagtggcgcagcagacatagtcctccacaccagccttgctctgcagatcagacacg 324 ||||| ||||||||||| || | |||||||| || ||||||||||||||||| || | | Sbjct: 1474 tgcacggtggcgcagcacacgaattcctccacgccggccttgctctgcagatcggagagg 1415 Query: 325 tcgaaggtcgccggctcctcgaacacggagacgagcgatgtccggagtgcggaggccgta 384 ||| | | |||||||||||||||||||||||| || |||||||| || ||| |||| Sbjct: 1414 tcgtacaccaccggctcctcgaacacggagacgaccgccgtccggagcgcagagcccgtc 1355 Query: 385 gtcagctgcgggttctcgatggcccgacacatgaggaagttgaggtcgcggatgtcggtg 444 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct: 1354 gtcagctgcgggttctcgattgcccggcacatgaggaagttgaggtcggcaatgtcagtg 1295 Query: 445 aggtgcttcttgttgtgcttggcgttgctgtaggcatcatggcacctcttggccagtgcc 504 |||||||||||||||| |||||||||| | || | ||| ||||||||||||||||| || Sbjct: 1294 aggtgcttcttgttgttcttggcgttggtatacgaatcttggcacctcttggccagctcc 1235 Query: 505 catagc 510 |||||| Sbjct: 1234 catagc 1229
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 35264797 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 35264856 Query: 280 cagacatagtcctccacaccagccttgctctgcagatcaga 320 || || | |||||||| || |||||||||||||||||||| Sbjct: 35264857 cacacgaattcctccacgcccgccttgctctgcagatcaga 35264897
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 143558 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 143617 Query: 280 cagacatagtcctccacaccagccttgctctgcagatcaga 320 || || | |||||||| || |||||||||||||||||||| Sbjct: 143618 cacacgaattcctccacgcccgccttgctctgcagatcaga 143658
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 35354869 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 35354928 Query: 280 cagacatagtcctccacaccagccttgctctgcagatcaga 320 || || | |||||||| || |||||||||||||||||||| Sbjct: 35354929 cacacgaattcctccacgcccgccttgctctgcagatcaga 35354969
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 73.8 bits (37), Expect = 5e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 103657 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 103598 Query: 280 cagacatagtcctccacaccagccttgctctgcagatcaga 320 || || | |||||||| || |||||||||||||||||||| Sbjct: 103597 cacacgaattcctccacgcccgccttgctctgcagatcaga 103557
>dbj|AB017543.1| Oryza sativa (japonica cultivar-group) transposable element RMu2-A1 DNA, complete sequence Length = 748 Score = 65.9 bits (33), Expect = 1e-07 Identities = 85/101 (84%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 328 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 269 Query: 280 cagacatagtcctccacaccagccttgctctgcagatcaga 320 || || | |||||||| || |||||||||||||||||||| Sbjct: 268 cacacgaattcctccacgcc-gccttgctctgcagatcaga 229
>ref|XM_470405.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1277 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 220 ccatccctgatagagtcgaatacactgatcgacgggccaatgccgtgcacagtggcgcag 279 |||||||||||||||||||| | | || ||||| || | ||| ||||||||||||||| Sbjct: 734 ccatccctgatagagtcgaacaatccaatggacggcccgacgccatgcacagtggcgcag 675 Query: 280 cagacatagtcctccacaccagccttgctc 309 || || | |||||||| || ||||||||| Sbjct: 674 cacacgaattcctccacgcccgccttgctc 645
>gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome 3, complete sequence Length = 204419 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gtgtaaaatcatcttcacctt 149 ||||||||||||||||||||| Sbjct: 163131 gtgtaaaatcatcttcacctt 163111
>gb|AC119677.2| Homo sapiens chromosome 1 clone RP5-1066H13, complete sequence Length = 170397 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 497 ccagtgcccatagccctccctctct 521 |||||||||||||||||| |||||| Sbjct: 44356 ccagtgcccatagccctctctctct 44380
>dbj|AB125313.1| Nannochloris bacillaris NbrbcS1-2, GAMM1, Mut2 genes for ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit, GAMM1 protein-like protein, DNA mismatch repair protein Mut2-like protein and genes for trypsin, peptidyl-prolyl cis-trans isomerase, complete cds Length = 12642 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 cttgttgtgcttggcgttgct 473 ||||||||||||||||||||| Sbjct: 11102 cttgttgtgcttggcgttgct 11082
>ref|NM_207075.1| Danio rerio zgc:77197 (zgc:77197), mRNA Length = 2305 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ctctgcagatcagacacgtcg 327 ||||||||||||||||||||| Sbjct: 885 ctctgcagatcagacacgtcg 865
>gb|BC066369.1| Danio rerio zgc:77197, mRNA (cDNA clone MGC:77197 IMAGE:6961909), complete cds Length = 2305 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ctctgcagatcagacacgtcg 327 ||||||||||||||||||||| Sbjct: 885 ctctgcagatcagacacgtcg 865
>emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chromosome 3, complete sequence Length = 89297 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gtgtaaaatcatcttcacctt 149 ||||||||||||||||||||| Sbjct: 23754 gtgtaaaatcatcttcacctt 23774
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 473908 gccctccctctctatttatc 473927
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 gcccatagccctccctctct 521 |||||||||||||||||||| Sbjct: 677009 gcccatagccctccctctct 677028
>gb|AC074259.14| Trypanosoma brucei chromosome 6 clone RPCI93-4M18, complete sequence Length = 160865 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 gcccatagccctccctctct 521 |||||||||||||||||||| Sbjct: 35585 gcccatagccctccctctct 35604
>gb|AC091353.6| Rattus norvegicus 4 BAC CH230-1B20 (Children's Hospital Oakland Research Institute) complete sequence Length = 242904 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ggatgtcggtgaggtgcttc 453 |||||||||||||||||||| Sbjct: 5738 ggatgtcggtgaggtgcttc 5757
>gb|AC095825.6| Rattus norvegicus 4 BAC CH230-9J6 (Children's Hospital Oakland Research Institute) complete sequence Length = 234084 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ggatgtcggtgaggtgcttc 453 |||||||||||||||||||| Sbjct: 132520 ggatgtcggtgaggtgcttc 132501
>gb|AY808791.1| Schistosoma japonicum SJCHGC03785 protein mRNA, partial cds Length = 958 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ccttcgtgtaaaatcatctt 143 |||||||||||||||||||| Sbjct: 647 ccttcgtgtaaaatcatctt 666
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 470088 gccctccctctctatttatc 470069
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 183426 gccctccctctctatttatc 183445
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 499931 gccctccctctctatttatc 499950
>ref|XM_821617.1| Trypanosoma brucei TREU927 clone RPCI93-4M18 hypothetical protein (Tb927.6.2090) partial mRNA Length = 2133 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gcccatagccctccctctct 521 |||||||||||||||||||| Sbjct: 1733 gcccatagccctccctctct 1714
>ref|XM_660472.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30134) partial mRNA Length = 1344 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gtcattccgttcttcccttc 58 |||||||||||||||||||| Sbjct: 1055 gtcattccgttcttcccttc 1036
>emb|AL451137.8| Human DNA sequence from clone RP11-18A15 on chromosome 9 Contains a CpG island, complete sequence Length = 162837 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttgctctgcagatcagacac 323 |||||||||||||||||||| Sbjct: 17824 ttgctctgcagatcagacac 17843
>emb|AL133514.7| Human DNA sequence from clone RP11-469I6 on chromosome 1q23.3-25.1 Contains part of the DNM3 gene for dynamin 3, complete sequence Length = 77164 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 acacatgaggaagttgaggt 430 |||||||||||||||||||| Sbjct: 72332 acacatgaggaagttgaggt 72313
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 120463 gccctccctctctatttatc 120482 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 102274 gccctccctctctatttatc 102255
>emb|AJ535776.1|ZMA535776 Zea mays chloroplast 4.5S rRNA gene, 5S rRNA gene, tRNA-Arg gene, ORF23, tRNA-Asn gene, ORF63 and rps15 gene (partial), cultivar CM111 Length = 2941 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 259 gccctccctctctatttatc 240
>emb|BX649282.8| Zebrafish DNA sequence from clone DKEYP-3F10 in linkage group 11, complete sequence Length = 175316 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cttgctctgcagatcagaca 322 |||||||||||||||||||| Sbjct: 129980 cttgctctgcagatcagaca 129961
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 41677 gccctccctctctatttatc 41696 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 23440 gccctccctctctatttatc 23421
>ref|XM_626681.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_1030), partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gtcattccgttcttcccttc 58 |||||||||||||||||||| Sbjct: 1109 gtcattccgttcttcccttc 1090
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ccctccctctctatttatct 529 |||||||||||||||||||| Sbjct: 21189861 ccctccctctctatttatct 21189880
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 120517 gccctccctctctatttatc 120536 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 102320 gccctccctctctatttatc 102301
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gacacgtcgaaggtcgccgg 338 |||||||||||||||||||| Sbjct: 5359592 gacacgtcgaaggtcgccgg 5359611 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gacacgtcgaaggtcgccgg 338 |||||||||||||||||||| Sbjct: 5279803 gacacgtcgaaggtcgccgg 5279822 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gacacgtcgaaggtcgccgg 338 |||||||||||||||||||| Sbjct: 5265478 gacacgtcgaaggtcgccgg 5265497 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gacacgtcgaaggtcgccgg 338 |||||||||||||||||||| Sbjct: 768991 gacacgtcgaaggtcgccgg 768972
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ccctccctctctatttatct 529 |||||||||||||||||||| Sbjct: 88522 ccctccctctctatttatct 88541
>gb|AY516578.1| Homo sapiens clone MLV-HeLa-724 MLV integration site Length = 165 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 acacatgaggaagttgaggt 430 |||||||||||||||||||| Sbjct: 54 acacatgaggaagttgaggt 73
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon Length = 8862 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 8627 gccctccctctctatttatc 8608
>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence Length = 178948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agggaagattacacgcactt 87 |||||||||||||||||||| Sbjct: 26312 agggaagattacacgcactt 26331
>emb|AL442639.2|HS5P15 Homo sapiens chromosome 9 BAC RP11-5P15, complete sequence Length = 165299 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttgctctgcagatcagacac 323 |||||||||||||||||||| Sbjct: 127016 ttgctctgcagatcagacac 127035
>gb|AC024933.34| Homo sapiens 3 BAC RP11-219D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169659 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 gacacatgaggaagttgagg 429 |||||||||||||||||||| Sbjct: 4151 gacacatgaggaagttgagg 4170
>gb|AY108422.1| Zea mays PCO129398 mRNA sequence Length = 1160 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gacatagtcctccacaccag 301 |||||||||||||||||||| Sbjct: 123 gacatagtcctccacaccag 104
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 121234 gccctccctctctatttatc 121253 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccctccctctctatttatc 528 |||||||||||||||||||| Sbjct: 102997 gccctccctctctatttatc 102978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,487,185 Number of Sequences: 3902068 Number of extensions: 3487185 Number of successful extensions: 59782 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59576 Number of HSP's gapped (non-prelim): 194 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
