ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40h06 |
|---|---|
| Clone Library Name | barley_pub |
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTL 263 ++I ++ G + G AKG V++G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTL 263 ++I ++ G + G AKG V++G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTL 263 ++I ++ G + G AKG V++G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTL 263 ++I ++ G + G AKG V++G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>RL16_LISMO (Q927L4) 50S ribosomal protein L16| Length = 144 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 141 MHITKSIELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTLW 266 M + K ++ R+ G+M GRAKGG T+V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISMF (Q71WF3) 50S ribosomal protein L16| Length = 144 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 141 MHITKSIELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTLW 266 M + K ++ R+ G+M GRAKGG T+V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISIN (Q7ANU4) 50S ribosomal protein L16| Length = 144 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 141 MHITKSIELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTLW 266 M + K ++ R+ G+M GRAKGG T+V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>DDHC_RHOSU (Q8GPG1) Dimethylsulfide dehydrogenase gamma subunit precursor| (Dimethylsulfide heme subunit) (DMS DH gamma subunit) (DMS DH heme subunit) Length = 265 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -1 Query: 188 AAIDFSNKLDALSYMHVSSDNQSPIVAWF 102 AAI+FS D++SYM + +D +SP+ W+ Sbjct: 132 AAIEFSESDDSVSYM-MGTDAESPVNIWY 159
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -1 Query: 275 LGAPEGARPFKLPDPMYYI 219 LG+ R FKLP+PMYYI Sbjct: 236 LGSSMSYRSFKLPNPMYYI 254
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 259 VPAPSSCPTPCITSVRPPLARPGML 185 VPAP+ PTP T V+P PG L Sbjct: 585 VPAPAPAPTPTPTPVQPTSPPPGPL 609
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 267 ARGCPPLQAARPHVLHRLGPLW-LGRACCH 181 ++GCP + RP +H L L L + CCH Sbjct: 922 SQGCPAADSQRPSTVHVLSQLLRLRQCCCH 951
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = -2 Query: 238 PTPCITSVRPPLARPGMLPLIFRISSMLLVICMFRQIINPQLLLGSFP 95 P C + P L RP + ++ + + +FR I+ PQ+L P Sbjct: 461 PEFCAQQIIPELERPNINEFPVLKAAAIKYVMVFRSILGPQVLASCLP 508
>ALR_CORGL (Q8RSU9) Alanine racemase (EC 5.1.1.1)| Length = 361 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 206 FGSAGHAAIDFSNKLDALSY 147 FG GH A DF+ +LD ++Y Sbjct: 327 FGENGHDATDFAERLDTINY 346
>RL16_BACC1 (Q73F89) 50S ribosomal protein L16| Length = 144 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIRKINGSMPGRAKGGLTDVIHGVGQLEGAGTLW 266 M + K ++ R+ G M GRAKGG T+V G L+ W Sbjct: 1 MLMPKRVKYRREHRGKMRGRAKGG-TEVAFGEFGLQAQAASW 41
>POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Frame = -1 Query: 263 EGARPFKLPDP---------MYYIG*APFGSAGHAAIDFSNKLDALSYMHVSSDNQSPIV 111 EG+ P ++ P M+Y G A F G I+ N + L HV+ + PIV Sbjct: 740 EGSAPPRISIPFISIGNAYSMFYDGWAKFDKQGTYGINTLNNMGTLYMRHVNDGSPGPIV 799 Query: 110 A 108 + Sbjct: 800 S 800 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,798,013 Number of Sequences: 219361 Number of extensions: 760504 Number of successful extensions: 2283 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2278 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
