>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01,
              complete sequence
          Length = 135184

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 212    cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
              |||| |||||||| ||||||||||| ||||||||||||| |||||| |||||
Sbjct: 104198 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctc 104249



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 231   ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
             |||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct: 80231 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgag 80275

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 212     cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
               |||| |||||||| ||||||||||| ||||||||||||| |||||| |||||
Sbjct: 5570989 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctc 5571040



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 231     ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
               |||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct: 5547022 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgag 5547066

>dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full
           insert sequence
          Length = 1131

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 212 cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
           |||| |||||||| ||||||||||| ||||||||||||| |||||| |||||
Sbjct: 885 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctc 834

>dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full
           insert sequence
          Length = 1076

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 231 ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
           |||||| ||||||||||||| |||||| ||||| |||||||||||
Sbjct: 892 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgag 848

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 212      cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
                |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 16055853 cctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 16055802

>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F09
          Length = 166568

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 212   cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
             |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 26186 cctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 26135

>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0040K22
          Length = 155832

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 212    cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
              |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 137255 cctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 137204

>ref|XM_477966.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 217 ccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
           |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 407 ccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 361

>gb|AY106317.1| Zea mays PCO101473 mRNA sequence
          Length = 827

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 231 ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
           |||||| ||||||||||||| ||| || ||||| |||||||||||
Sbjct: 524 ggggtcaggcagcttgaaggtgcgcgcgccctccggcgcgccgag 480

>emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phosphatase
          Length = 2748

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 218  cgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
            ||||||| ||||||||||| ||| |  |||||| ||| || ||||| |||||||||||
Sbjct: 2612 cgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgccgag 2555

>emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putative acid phosphatase (bci-3
            gene)
          Length = 1152

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 218  cgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgag 275
            ||||||| ||||||||||| ||| |  |||||| ||| || ||||| |||||||||||
Sbjct: 1016 cgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgccgag 959

>gb|AC118201.8| Mus musculus chromosome 7, clone RP23-339M11, complete sequence
          Length = 194241

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     caagctctcaacaatggaaa 100
              ||||||||||||||||||||
Sbjct: 189390 caagctctcaacaatggaaa 189371

>gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, complete sequence
          Length = 175873

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    caagctctcaacaatggaaa 100
             ||||||||||||||||||||
Sbjct: 27587 caagctctcaacaatggaaa 27568

>gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 174576

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    agctctcaacaatggaaatg 102
             ||||||||||||||||||||
Sbjct: 45528 agctctcaacaatggaaatg 45547

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 235     tcgggcagcttgaaggggcgggcaccct 262
               |||||||||||||||| |||||| ||||
Sbjct: 1551158 tcgggcagcttgaaggcgcgggcgccct 1551185

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 58       taattcatagtagcaattaa 77
                ||||||||||||||||||||
Sbjct: 22025728 taattcatagtagcaattaa 22025709

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     ttattcgaaaaatcaatggc 185
               ||||||||||||||||||||
Sbjct: 3460620 ttattcgaaaaatcaatggc 3460601

>emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 in linkage group 20,
            complete sequence
          Length = 84525

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   attaagcagcatgcaacatc 43
            ||||||||||||||||||||
Sbjct: 6109 attaagcagcatgcaacatc 6090

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 58       taattcatagtagcaattaa 77
                ||||||||||||||||||||
Sbjct: 21954073 taattcatagtagcaattaa 21954054

>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138308

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     taattcatagtagcaattaa 77
              ||||||||||||||||||||
Sbjct: 131856 taattcatagtagcaattaa 131837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,050,537
Number of Sequences: 3902068
Number of extensions: 2050537
Number of successful extensions: 35198
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35058
Number of HSP's gapped (non-prelim): 140
length of query: 275
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 253
effective length of database: 17,147,199,772
effective search space: 4338241542316
effective search space used: 4338241542316
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)