ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 327 7e-87
2emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 299 2e-78
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 60 2e-06
4gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.15
5gb|AC145202.24| Medicago truncatula clone mth2-15e9, complete se... 42 0.58
6gb|AC023175.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 2.3
7gb|AC004917.2| Homo sapiens PAC clone RP5-892G19 from 7, complet... 40 2.3
8emb|AL353613.10| Human DNA sequence from clone RP11-395D3 on chr... 40 2.3
9gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome... 40 2.3
10gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 2.3
11emb|BX469931.8| Zebrafish DNA sequence from clone DKEY-108D22 in... 40 2.3
12gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complet... 40 2.3
13gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosom... 38 9.1
14gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
15gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, co... 38 9.1
16gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
17gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosom... 38 9.1
18gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 38 9.1
19gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, com... 38 9.1
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.1
21emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 38 9.1
22gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, comple... 38 9.1
23gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580... 38 9.1
24gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, c... 38 9.1
25emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chr... 38 9.1
26emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chrom... 38 9.1
27emb|CR378670.1| Photobacterium profundum SS9; segment 8/12 38 9.1
28gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome... 38 9.1
29gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, comple... 38 9.1
30gb|AC099794.2| Homo sapiens chromosome 1 clone RP4-771M4, comple... 38 9.1
31dbj|AK030425.1| Mus musculus adult male pituitary gland cDNA, RI... 38 9.1
32gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A... 38 9.1
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
37gb|AC034215.4|AC034215 Homo sapiens chromosome 5 clone CTD-2001K... 38 9.1
38gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, com... 38 9.1
39gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome ... 38 9.1
40dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
41dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.1
43gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome ... 38 9.1
44gb|AC134435.3| Mus musculus BAC clone RP24-423J19 from 1, comple... 38 9.1
45gb|AC131685.4| Mus musculus BAC clone RP23-372G24 from 1, comple... 38 9.1
46emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chr... 38 9.1
47emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on ch... 38 9.1 
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  327 bits (165), Expect = 7e-87
 Identities = 174/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   cacacacaacggatgcatatgttttgacctctcatcttattggctaaacatcacacttcc 62
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 671 cacacacaacagatgcatatgttttgacctctcatcttattggctagacatcacacttcc 612

                                                                       
Query: 63  acgattcaaagtttaaaacacataaactacttaacggccactcacacagtcacacagtac 122
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 acgattcaaagtttaaaacacatagactacttaacggccactcacacagtcacacagtac 552

                                                                    
Query: 123 tactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 495
to top
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  299 bits (151), Expect = 2e-78
 Identities = 157/159 (98%)
 Strand = Plus / Minus

                                                                        
Query: 27   tgacctctcatcttattggctaaacatcacacttccacgattcaaagtttaaaacacata 86
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 87   aactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 146
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                   
Query: 147  atatctctcacatgtcagcggcgatcccctcgtcgccgg 185
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccgg 1087
to top
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 152  tctcacatgtcagcggcgatcccctcgtcgccgg 185
            ||||||||||| ||||||||||||||||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccgg 1074



 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   tttgacctctcatcttatt 43
            |||||||||||||||||||
Sbjct: 1221 tttgacctctcatcttatt 1203
to top
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 101   cactcacacagtcacacagtactact 126
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437
to top
>gb|AC145202.24| Medicago truncatula clone mth2-15e9, complete sequence
          Length = 89293

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaagtttaaaacacataaact 90
             |||||||||||||||||||||
Sbjct: 42221 aaagtttaaaacacataaact 42201
to top
>gb|AC023175.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-69B14, complete
              sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaacacataaactacttaac 97
              ||||||||||||||||||||
Sbjct: 135334 aaacacataaactacttaac 135353
to top
>gb|AC004917.2| Homo sapiens PAC clone RP5-892G19 from 7, complete sequence
          Length = 110233

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tttaaaacacataaactact 93
            ||||||||||||||||||||
Sbjct: 2057 tttaaaacacataaactact 2076
to top
>emb|AL353613.10| Human DNA sequence from clone RP11-395D3 on chromosome 9 Contains the
             5' end of a novel gene, complete sequence
          Length = 97898

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaagtttaaaacacataaac 89
             ||||||||||||||||||||
Sbjct: 28497 aaagtttaaaacacataaac 28478
to top
>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence
          Length = 199032

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    gttatatatctctcacatgtcagc 165
              ||||||||||| ||||||||||||
Sbjct: 173426 gttatatatctatcacatgtcagc 173449
to top
>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 15     atgcatatgttttgacctctcatcttattggc 46
              |||||||||||| ||||| ||||||| |||||
Sbjct: 156758 atgcatatgtttagacctgtcatctttttggc 156727
to top
>emb|BX469931.8| Zebrafish DNA sequence from clone DKEY-108D22 in linkage group 4,
              complete sequence
          Length = 204487

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     caaagtttaaaacacataaactac 92
              |||||||||||||||| |||||||
Sbjct: 172879 caaagtttaaaacacacaaactac 172902
to top
>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence
          Length = 185158

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gttatatatctctcacatgtcagc 165
             ||||||||||| ||||||||||||
Sbjct: 41286 gttatatatctatcacatgtcagc 41309
to top
>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete
             sequence
          Length = 227936

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   cactcacacagtcacacag 119
             |||||||||||||||||||
Sbjct: 81128 cactcacacagtcacacag 81110
to top
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     tttgacctctcatcttatt 43
              |||||||||||||||||||
Sbjct: 129022 tttgacctctcatcttatt 129040
to top
>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence
          Length = 153767

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   ccactcacacagtcacaca 118
             |||||||||||||||||||
Sbjct: 40858 ccactcacacagtcacaca 40876
to top
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
             complete sequence
          Length = 187034

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   ccactcacacagtcacaca 118
             |||||||||||||||||||
Sbjct: 53218 ccactcacacagtcacaca 53236
to top
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete
             sequence
          Length = 213720

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   ctcacacagtcacacagta 121
             |||||||||||||||||||
Sbjct: 19062 ctcacacagtcacacagta 19044
to top
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tttgacctctcatcttatt 43
             |||||||||||||||||||
Sbjct: 14771 tttgacctctcatcttatt 14789
to top
>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence
          Length = 175009

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    ccactcacacagtcacaca 118
              |||||||||||||||||||
Sbjct: 103284 ccactcacacagtcacaca 103302
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 100      ccactcacacagtcacaca 118
                |||||||||||||||||||
Sbjct: 20254781 ccactcacacagtcacaca 20254763
to top
>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    cttccacgattcaaagttt 76
             |||||||||||||||||||
Sbjct: 91284 cttccacgattcaaagttt 91302
to top
>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence
          Length = 182976

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ccactcacacagtcacaca 118
             |||||||||||||||||||
Sbjct: 90066 ccactcacacagtcacaca 90048
to top
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete
             sequence
          Length = 185664

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 103   ctcacacagtcacacagta 121
             |||||||||||||||||||
Sbjct: 64997 ctcacacagtcacacagta 65015
to top
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence
          Length = 214913

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 103   ctcacacagtcacacagta 121
             |||||||||||||||||||
Sbjct: 52423 ctcacacagtcacacagta 52441
to top
>emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chromosome 6, complete
             sequence
          Length = 101064

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 96    acggccactcacacagtcacaca 118
             |||||||||||||||| ||||||
Sbjct: 72671 acggccactcacacagacacaca 72649
to top
>emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chromosome 13q22.1-31.1
             Contains part of the LMO7 gene for LIM domain only 7
             (KIAA0858) and a novel pseudogene (FLJ13188, FLJ22977),
             complete sequence
          Length = 139252

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ttcaaagtttaaaacacat 85
             |||||||||||||||||||
Sbjct: 22785 ttcaaagtttaaaacacat 22767
to top
>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12
          Length = 348672

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     acacataaactacttaacg 98
              |||||||||||||||||||
Sbjct: 326932 acacataaactacttaacg 326950
to top
>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence
          Length = 219067

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 101    cactcacacagtcacacag 119
              |||||||||||||||||||
Sbjct: 190511 cactcacacagtcacacag 190493
to top
>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence
          Length = 168190

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    tcttattggctaaacatca 55
             |||||||||||||||||||
Sbjct: 91623 tcttattggctaaacatca 91641
to top
>gb|AC099794.2| Homo sapiens chromosome 1 clone RP4-771M4, complete sequence
          Length = 134341

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 143   ttatatatctctcacatgtcagc 165
             |||||||| ||||||||||||||
Sbjct: 71891 ttatatatatctcacatgtcagc 71869
to top
>dbj|AK030425.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330411C23
            product:unclassifiable, full insert sequence
          Length = 3637

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   ggccactcacacagtcaca 116
            |||||||||||||||||||
Sbjct: 2412 ggccactcacacagtcaca 2430
to top
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
             sequence
          Length = 156929

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ccactcacacagtcacaca 118
             |||||||||||||||||||
Sbjct: 50088 ccactcacacagtcacaca 50070
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 25       tttgacctctcatcttatt 43
                |||||||||||||||||||
Sbjct: 11484766 tttgacctctcatcttatt 11484748
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 100      ccactcacacagtcacaca 118
                |||||||||||||||||||
Sbjct: 28268976 ccactcacacagtcacaca 28268994
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 100      ccactcacacagtcacaca 118
                |||||||||||||||||||
Sbjct: 20247810 ccactcacacagtcacaca 20247792
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 14       gatgcatatgttttgacct 32
                |||||||||||||||||||
Sbjct: 37149620 gatgcatatgttttgacct 37149602
to top
>gb|AC034215.4|AC034215 Homo sapiens chromosome 5 clone CTD-2001K4, complete sequence
          Length = 142116

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 66     attcaaagtttaaaacacataaa 88
              ||||||||||||||||| |||||
Sbjct: 106013 attcaaagtttaaaacatataaa 105991
to top
>gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, complete sequence
          Length = 175214

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   cactcacacagtcacacag 119
             |||||||||||||||||||
Sbjct: 98220 cactcacacagtcacacag 98202
to top
>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence
          Length = 256130

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   cactcacacagtcacacag 119
             |||||||||||||||||||
Sbjct: 37035 cactcacacagtcacacag 37017
to top
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489B03
          Length = 150381

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    gatgcatatgttttgacct 32
             |||||||||||||||||||
Sbjct: 24276 gatgcatatgttttgacct 24258
to top
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0683F02
          Length = 153388

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     gatgcatatgttttgacct 32
              |||||||||||||||||||
Sbjct: 150761 gatgcatatgttttgacct 150743
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 25       tttgacctctcatcttatt 43
                |||||||||||||||||||
Sbjct: 11563955 tttgacctctcatcttatt 11563937
to top
>gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome 5, complete sequence
          Length = 236596

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    ccactcacacagtcacaca 118
              |||||||||||||||||||
Sbjct: 178813 ccactcacacagtcacaca 178831
to top
>gb|AC134435.3| Mus musculus BAC clone RP24-423J19 from 1, complete sequence
          Length = 225687

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    taaaacacataaactactt 94
             |||||||||||||||||||
Sbjct: 97574 taaaacacataaactactt 97556
to top
>gb|AC131685.4| Mus musculus BAC clone RP23-372G24 from 1, complete sequence
          Length = 163474

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     taaaacacataaactactt 94
              |||||||||||||||||||
Sbjct: 109984 taaaacacataaactactt 109966
to top
>emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chromosome 11, complete
              sequence
          Length = 228391

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     ggccactcacacagtcaca 116
              |||||||||||||||||||
Sbjct: 204053 ggccactcacacagtcaca 204035
to top
>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete
             sequence
          Length = 162556

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   actcacacagtcacacagt 120
             |||||||||||||||||||
Sbjct: 83809 actcacacagtcacacagt 83827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,498,627
Number of Sequences: 3902068
Number of extensions: 1498627
Number of successful extensions: 108443
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108069
Number of HSP's gapped (non-prelim): 374
length of query: 185
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 163
effective length of database: 17,147,199,772
effective search space: 2794993562836
effective search space used: 2794993562836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top