ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40h02 |
|---|---|
| Clone Library Name | barley_pub |
>DET2_ARATH (Q38944) Probable steroid reductase DET2 (EC 1.3.99.-)| Length = 262 Score = 76.6 bits (187), Expect = 3e-14 Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Frame = -1 Query: 469 WCQW---IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELV 299 W W IG V+FI G I L L++ ++ YVIP G WF VSCP+Y E + Sbjct: 148 WFWWRFVIGMVVFITGMYINITSDRTLVRLKK-ENRGGYVIPRGGWFELVSCPNYFGEAI 206 Query: 298 IYLGMLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKF-EDYPRSRYAIIPFV 131 +LG + + S + F F++ +NL A +H+WY+ KF E+YP++R A+IPFV Sbjct: 207 EWLGWAVMT-WSWAGIGF-FLYTCSNLFPRARASHKWYIAKFKEEYPKTRKAVIPFV 261
>S5A1_RAT (P24008) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 1) (SR type 1) Length = 259 Score = 69.7 bits (169), Expect = 4e-12 Identities = 44/113 (38%), Positives = 62/113 (54%) Frame = -1 Query: 466 CQWIGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLG 287 C G +++ G + I IL +LR+ ++ Y IP G F VS +Y ELV + G Sbjct: 150 CFLTGFALWLVGMVINIHSDHILRNLRKPGETG-YKIPRGGLFEYVSAANYFGELVEWCG 208 Query: 286 MLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFVL 128 +AS V+ LF ++ L A Q H+WY +KFEDYP+SR +IPFVL Sbjct: 209 FALASWSLQGVVFALF--TLSTLLTRAKQHHQWYHEKFEDYPKSRKILIPFVL 259
>DFG10_YEAST (P40526) Protein DFG10| Length = 253 Score = 67.0 bits (162), Expect = 2e-11 Identities = 38/107 (35%), Positives = 60/107 (56%) Frame = -1 Query: 448 VIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLIASG 269 +IF S Q + H IL +L + Y +P G F V CPHYL E++IY +L Sbjct: 157 IIFCIASWDQYKNHVILANLVK------YSLPTGRLFRLVCCPHYLDEIIIYSTLL---- 206 Query: 268 GSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFVL 128 + + ++VIT+L+ +A++T +Y KF+D + YAIIPF++ Sbjct: 207 PYEQEFYLTLVWVITSLTISALETKNYYRHKFKDNHVAPYAIIPFII 253
>S5A1_MACFA (Q28891) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 1) (SR type 1) Length = 263 Score = 66.2 bits (160), Expect = 4e-11 Identities = 41/109 (37%), Positives = 60/109 (55%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 IG +++ G L I IL +LR+ D+ Y IP G F V+ +Y E++ + G + Sbjct: 157 IGFGLWLAGMLINIHSDHILRNLRKPGDTG-YKIPRGGLFEYVTAANYFGEIMEWCGYAL 215 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 AS + + F F LS A + HRWYLQKFE+YP+ R +IPF+ Sbjct: 216 ASWSVQGAAFAFFTFCF--LSGRAKEHHRWYLQKFEEYPKFRKILIPFL 262
>S5A1_HUMAN (P18405) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 1) (SR type 1) (S5AR) Length = 259 Score = 63.9 bits (154), Expect = 2e-10 Identities = 40/109 (36%), Positives = 59/109 (54%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 IG +++ G L I IL +LR+ D+ Y IP G F V+ +Y E++ + G + Sbjct: 153 IGFGLWLTGMLINIHSDHILRNLRKPGDTG-YKIPRGGLFEYVTAANYFGEIMEWCGYAL 211 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 AS + + F F LS A + H WYL+KFE+YP+ R IIPF+ Sbjct: 212 ASWSVQGAAFAFFTFCF--LSGRAKEHHEWYLRKFEEYPKFRKIIIPFL 258
>S5A2_MACFA (Q28892) 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 2) (SR type 2) (5 alpha-SR2) Length = 254 Score = 61.6 bits (148), Expect = 1e-09 Identities = 40/109 (36%), Positives = 61/109 (55%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 +G +FI G I IL LR+ + Y IP G F+ VS ++L E++ ++G + Sbjct: 148 LGVFLFILGMGVNIHSDYILRQLRKPGEIT-YRIPKGGLFTYVSGANFLGEIIEWIGYAL 206 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 A+ ++ F F F + L A HR+YL+ FEDYP+SR A+IPF+ Sbjct: 207 ATWSLP-ALAFAF-FSVCFLGLRAFHHHRFYLKMFEDYPKSRKALIPFI 253
>S5A2_HUMAN (P31213) 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 2) (SR type 2) (5 alpha-SR2) (Type II 5-alpha reductase) Length = 254 Score = 61.6 bits (148), Expect = 1e-09 Identities = 40/109 (36%), Positives = 61/109 (55%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 +G +FI G I IL LR+ + Y IP G F+ VS ++L E++ ++G + Sbjct: 148 LGVFLFILGMGINIHSDYILRQLRKPGEIS-YRIPQGGLFTYVSGANFLGEIIEWIGYAL 206 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 A+ ++ F F F + L A HR+YL+ FEDYP+SR A+IPF+ Sbjct: 207 ATWSLP-ALAFAF-FSLCFLGLRAFHHHRFYLKMFEDYPKSRKALIPFI 253
>S5A2_PIG (O18765) 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 2) (SR type 2) (5 alpha-SR2) Length = 254 Score = 59.7 bits (143), Expect = 4e-09 Identities = 39/109 (35%), Positives = 61/109 (55%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 +G +FI G I IL LR+ + Y IP G F+ VS ++L E++ ++G + Sbjct: 148 LGVFLFILGMGINIHSDYILRQLRKPGEVI-YKIPQGGLFTYVSGANFLGEIIEWIGYAL 206 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 A+ ++ F F F + L A HR+Y++ FEDYP+SR A+IPF+ Sbjct: 207 ATWSLP-ALAFAF-FSLCFLGLRAFHHHRFYVKMFEDYPKSRKALIPFI 253
>S5A2_MOUSE (Q99N99) 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 2) (SR type 2) (5 alpha-SR2) Length = 254 Score = 59.7 bits (143), Expect = 4e-09 Identities = 36/109 (33%), Positives = 58/109 (53%) Frame = -1 Query: 457 IGAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 +G FI G I +L LR+ + Y IP G F+ VS ++L E++ ++G + Sbjct: 148 VGVFFFILGMGINIHSDCMLRQLRKPGEVI-YRIPQGGLFTYVSGANFLGEIIEWMGYAL 206 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 A+ + + F + L A HR+YL+ F+DYP+SR A+IPF+ Sbjct: 207 ATWS--VPAFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSRKALIPFI 253
>S5A2_RAT (P31214) 3-oxo-5-alpha-steroid 4-dehydrogenase 2 (EC 1.3.99.5)| (Steroid 5-alpha-reductase 2) (SR type 2) (5 alpha-SR2) Length = 254 Score = 57.8 bits (138), Expect = 1e-08 Identities = 36/108 (33%), Positives = 57/108 (52%) Frame = -1 Query: 454 GAVIFIWGSLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLIA 275 G +FI G I L LR+ + Y IP G F+ VS ++L E++ ++G +A Sbjct: 149 GVFLFILGMGINIHSDYTLRQLRKPGEVI-YRIPRGGLFTYVSGANFLGEIIEWIGYALA 207 Query: 274 SGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIPFV 131 + + + F + L A HR+YL+ F+DYP+SR A+IPF+ Sbjct: 208 TWS--VPAFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSRKALIPFI 253
>GPSN2_RAT (Q64232) Synaptic glycoprotein SC2| Length = 308 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/71 (38%), Positives = 41/71 (57%) Frame = -1 Query: 340 FSRVSCPHYLAELVIYLGMLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYP 161 F VSCP+Y E+ ++G I + ++++ L F T ++ A HR YL++F DYP Sbjct: 240 FLLVSCPNYTYEVGSWIGFAIMTQCVPVALFSLVGF--TQMTIWAKGKHRSYLKEFRDYP 297 Query: 160 RSRYAIIPFVL 128 R IIPF+L Sbjct: 298 PLRMPIIPFLL 308
>GPSN2_MOUSE (Q9CY27) Synaptic glycoprotein SC2| Length = 308 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/71 (38%), Positives = 41/71 (57%) Frame = -1 Query: 340 FSRVSCPHYLAELVIYLGMLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYP 161 F VSCP+Y E+ ++G I + ++++ L F T ++ A HR YL++F DYP Sbjct: 240 FLLVSCPNYTYEVGSWIGFAILTQCVPVALFSLVGF--TQMTIWAKGKHRSYLKEFRDYP 297 Query: 160 RSRYAIIPFVL 128 R IIPF+L Sbjct: 298 PLRMPIIPFLL 308
>GPSN2_HUMAN (Q9NZ01) Synaptic glycoprotein SC2| Length = 308 Score = 47.0 bits (110), Expect = 3e-05 Identities = 27/71 (38%), Positives = 41/71 (57%) Frame = -1 Query: 340 FSRVSCPHYLAELVIYLGMLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYP 161 F VSCP+Y E+ ++G I + ++++ L F T ++ A HR YL++F DYP Sbjct: 240 FLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGF--TQMTIWAKGKHRSYLKEFRDYP 297 Query: 160 RSRYAIIPFVL 128 R IIPF+L Sbjct: 298 PLRMPIIPFLL 308
>ERG24_HUMAN (O76062) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (Delta14-SR) (Transmembrane 7 superfamily member 2) (Another new gene 1 protein) (Putative sterol reductase SR-1) Length = 418 Score = 32.7 bits (73), Expect = 0.52 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = -1 Query: 343 WFSRVSCPHYLAELVIYLGMLIASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKF--- 173 W+ V P+YL +L++ L + G S + +F ++ L + R LQK+ Sbjct: 342 WWGMVRHPNYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLA 401 Query: 172 --EDYPRSRYAIIPFV 131 E R Y I+P++ Sbjct: 402 WQEYCRRVPYRIMPYI 417
>UN93B_HUMAN (Q9H1C4) UNC93 homolog B1 (UNC-93B protein) (hUNC93B1)| Length = 597 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 9/83 (10%) Frame = -1 Query: 484 LLKLGWCQWIGAVIFIWGS-LHQIRCHAILGSLRENKDSDEYVIPCGDWFSRV------- 329 +L+ W ++ A ++ GS L++ +LG L E+K+ +++ W+ V Sbjct: 428 VLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYL 487 Query: 328 -SCPHYLAELVIYLGMLIASGGS 263 S H A+L + L L+A+ S Sbjct: 488 GSSLHMKAKLAVLLVTLVAAAVS 510
>UMP7_ARATH (Q9FMV1) Unknown mitochondrial protein At5g63510| Length = 252 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 361 VIPCGDWFSRVSCPHYLAELVIYLGMLIASGGSDISVW 248 +IP G W +V+ Y+A V+ G + GS SVW Sbjct: 58 IIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGS--SVW 93
>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680| Length = 256 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 361 VIPCGDWFSRVSCPHYLAELVIYLGMLIASGGSDISVW 248 +IP G W +V+ Y+A V+ G + GS SVW Sbjct: 62 IIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGS--SVW 97
>UN93B_MOUSE (Q8VCW4) UNC93 homolog B1 (UNC-93B protein)| Length = 598 Score = 28.5 bits (62), Expect = 9.7 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Frame = -1 Query: 448 VIFIWG---SLHQIRCHAILGSLRENKDSDEYVIPCGDWFSRVSCPHYLAELVIYLGMLI 278 V +WG +L++ +LG L E+K+ +++ W+ V A V+YLG + Sbjct: 438 VAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV------AIFVVYLGSSL 491 Query: 277 ASGGSDISVWFLFIFVITNLSFAAIQTHRWYLQKFEDYPRSRYAIIP 137 L + ++T ++ AA ++ W QK + R IP Sbjct: 492 PMKAK------LAVLLVTLVAAAA--SYLWMEQKLQQGLVPRQPRIP 530
>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2055 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 77 ARTHDFFTAHKECL*MLQYKWNDRIARTGVVFKLLK 184 A DFFT + CL QY IARTG++ L+ Sbjct: 1338 AELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQ 1373 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,613,757 Number of Sequences: 219361 Number of extensions: 1548160 Number of successful extensions: 3438 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3363 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3432 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
