ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009209.1| Triticum aestivum clone wle1n.pk0043.b1:fis, full... 731 0.0
2ref|XM_473600.1| Oryza sativa (japonica cultivar-group), predic... 406 e-110
3dbj|AK099759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
4dbj|AK104042.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
5dbj|AK073542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
6ref|XM_478199.1| Oryza sativa (japonica cultivar-group), mRNA 387 e-104
7gb|AY110472.1| Zea mays CL34681_1 mRNA sequence 365 9e-98
8emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4,... 127 4e-26
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
11dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
12gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Can... 46 0.11
13ref|XM_660835.1| Cryptosporidium hominis TU502 hypothetical prot... 44 0.42
14emb|CR847811.1| Human DNA sequence from clone XX-NCIH2171_5AI03,... 44 0.42
15emb|CR847576.1| Human DNA sequence from clone XX-NCIH2171_5M12, ... 44 0.42
16gb|AC108925.8| Homo sapiens chromosome 8, clone RP11-1136L8, com... 44 0.42
17gb|AC104370.7| Homo sapiens chromosome 8, clone RP11-367L7, comp... 44 0.42
18ref|XM_637581.1| Dictyostelium discoideum Ras GTPase (DDB0229980... 42 1.7
19gb|U88174.1| Caenorhabditis elegans cosmid M01A10, complete sequ... 42 1.7
20gb|AC134433.3| Mus musculus BAC clone RP24-405A4 from chromosome... 42 1.7
21gb|AC145392.2| Mus musculus BAC clone RP24-171E5 from chromosome... 42 1.7
22gb|AC117267.2| Dictyostelium discoideum chromosome 2 map 5836255... 42 1.7
23emb|AL353574.8| Human DNA sequence from clone RP11-551M18 on chr... 42 1.7
24gb|AY321356.1| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme ... 40 6.5
25gb|AC186184.1| Pan troglodytes chromosome UNKNOWN clone CH251-13... 40 6.5
26gb|AC120386.12| Mus musculus chromosome 9, clone RP24-294A16, co... 40 6.5
27gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) ... 40 6.5
28emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on ch... 40 6.5
29gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, comp... 40 6.5
30gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chrom... 40 6.5
31gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, compl... 40 6.5
32gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, compl... 40 6.5
33gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, comple... 40 6.5
34gb|AC008897.7|AC008897 Homo sapiens chromosome 5 clone CTD-2235C... 40 6.5
35gb|AC092587.3| Homo sapiens BAC clone RP11-38C17 from 2, complet... 40 6.5
36gb|AC099684.7| Homo sapiens chromosome 17, clone CTD-2545H1, com... 40 6.5
37emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in... 40 6.5
38gb|AC074310.29| Mus musculus strain C57BL/6J chromosome 1 clone ... 40 6.5
39gb|AY862404.1| Vibrio cholerae plasmid pKA1 transposase (tnp) ge... 40 6.5
40dbj|AP002409.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.5
41dbj|AP005210.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 40 6.5 
>gb|BT009209.1| Triticum aestivum clone wle1n.pk0043.b1:fis, full insert mRNA
           sequence
          Length = 613

 Score =  731 bits (369), Expect = 0.0
 Identities = 447/474 (94%), Gaps = 1/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  acattttaacttacaagctgtcacatttacatgaatatcttttacaagccgggcttatgc 70
           ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 513 acattttaacttacatgctgtcacatttacatgaatatcttttacatgccgggcttgtgc 454

                                                                       
Query: 71  attctagccagaacgcacgannnnnnnactgcacacaaggaatgcctgtagatgctacaa 130
           |||||||||||||| ||| |       |||||||| ||||||||| ||||||||||||||
Sbjct: 453 attctagccagaacacac-agatttttactgcacagaaggaatgcttgtagatgctacaa 395

                                                                       
Query: 131 tacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacca 190
           ||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 394 tacaaatggaatgatagcatagcgagagcgggggtagtcttcaaacttttggaggtacca 335

                                                                       
Query: 191 tctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacca 250
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cctatgagtttgtactgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacca 275

                                                                       
Query: 251 cactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcagc 310
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 cactgaaatgtctgatccaccactagctatcaacatgcccaaatatataactagttcagc 215

                                                                       
Query: 311 aaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcatc 370
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 214 aaggtaatgagggcaagacacacgactaaaccagtcaccgcaaggaataacatattcatc 155

                                                                       
Query: 371 agaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggga 430
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 154 agaatctttattttcgcgcaacgatccaagaattgcatgacaacggatctgatggaggga 95

                                                                 
Query: 431 tccccaaatgaatataacagcacctatccattggcaccaccccaactttaaaag 484
           |||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 94  tccccaaatgaatacaatagcacctatccactggcaccaccccaactttaaaag 41
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>ref|XM_473600.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score =  406 bits (205), Expect = e-110
 Identities = 313/349 (89%)
 Strand = Plus / Minus

                                                                        
Query: 130  atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
            |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 1060 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 1001

                                                                        
Query: 190  atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
            |  | ||||||| || |||||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 1000 acttgtgagtttctactgctgcaaatgacaggtttgtgatcacaaatacgaacaggaacc 941

                                                                        
Query: 250  acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
            |||||| |||||||  |||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct: 940  acactggaatgtcttctccaccactagcaaccaacatgccaaaatatattactagttcag 881

                                                                        
Query: 310  caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
            ||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||
Sbjct: 880  caaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaattacatattcat 821

                                                                        
Query: 370  cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
            |||||||||| |  || ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 820  cagaatctttgtgctcacgcaacgttccaagaattgcatggcaacggatctgatggaggg 761

                                                             
Query: 430  atccccaaatgaatataacagcacctatccattggcaccaccccaactt 478
            | ||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 760  aaccccaaatgaatataacagcacctatccactgggtccaccccaactt 712
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>dbj|AK099759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093L13, full
            insert sequence
          Length = 2436

 Score =  406 bits (205), Expect = e-110
 Identities = 313/349 (89%)
 Strand = Plus / Minus

                                                                        
Query: 130  atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
            |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 2183 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 2124

                                                                        
Query: 190  atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
            |  | ||||||| || |||||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 2123 acttgtgagtttctactgctgcaaatgacaggtttgtgatcacaaatacgaacaggaacc 2064

                                                                        
Query: 250  acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
            |||||| |||||||  |||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct: 2063 acactggaatgtcttctccaccactagcaaccaacatgccaaaatatattactagttcag 2004

                                                                        
Query: 310  caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
            ||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||
Sbjct: 2003 caaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaattacatattcat 1944

                                                                        
Query: 370  cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
            |||||||||| |  || ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1943 cagaatctttgtgctcacgcaacgttccaagaattgcatggcaacggatctgatggaggg 1884

                                                             
Query: 430  atccccaaatgaatataacagcacctatccattggcaccaccccaactt 478
            | ||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 1883 aaccccaaatgaatataacagcacctatccactgggtccaccccaactt 1835
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>dbj|AK104042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H12, full
            insert sequence
          Length = 1739

 Score =  406 bits (205), Expect = e-110
 Identities = 313/349 (89%)
 Strand = Plus / Minus

                                                                        
Query: 130  atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
            |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 1486 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 1427

                                                                        
Query: 190  atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
            |  | ||||||| || |||||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 1426 acttgtgagtttctactgctgcaaatgacaggtttgtgatcacaaatacgaacaggaacc 1367

                                                                        
Query: 250  acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
            |||||| |||||||  |||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct: 1366 acactggaatgtcttctccaccactagcaaccaacatgccaaaatatattactagttcag 1307

                                                                        
Query: 310  caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
            ||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||
Sbjct: 1306 caaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaattacatattcat 1247

                                                                        
Query: 370  cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
            |||||||||| |  || ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1246 cagaatctttgtgctcacgcaacgttccaagaattgcatggcaacggatctgatggaggg 1187

                                                             
Query: 430  atccccaaatgaatataacagcacctatccattggcaccaccccaactt 478
            | ||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 1186 aaccccaaatgaatataacagcacctatccactgggtccaccccaactt 1138
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>dbj|AK073542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042F22, full
            insert sequence
          Length = 1770

 Score =  406 bits (205), Expect = e-110
 Identities = 313/349 (89%)
 Strand = Plus / Minus

                                                                        
Query: 130  atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
            |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 1517 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 1458

                                                                        
Query: 190  atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
            |  | ||||||| || |||||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 1457 acttgtgagtttctactgctgcaaatgacaggtttgtgatcacaaatacgaacaggaacc 1398

                                                                        
Query: 250  acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
            |||||| |||||||  |||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct: 1397 acactggaatgtcttctccaccactagcaaccaacatgccaaaatatattactagttcag 1338

                                                                        
Query: 310  caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
            ||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||
Sbjct: 1337 caaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaattacatattcat 1278

                                                                        
Query: 370  cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
            |||||||||| |  || ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1277 cagaatctttgtgctcacgcaacgttccaagaattgcatggcaacggatctgatggaggg 1218

                                                             
Query: 430  atccccaaatgaatataacagcacctatccattggcaccaccccaactt 478
            | ||||||||||||||||||||||||||||| |||  ||||||||||||
Sbjct: 1217 aaccccaaatgaatataacagcacctatccactgggtccaccccaactt 1169
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>ref|XM_478199.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1062

 Score =  387 bits (195), Expect = e-104
 Identities = 312/351 (88%)
 Strand = Plus / Minus

                                                                        
Query: 130  atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
            |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 1057 atacaaatggaatgatagcatagcgagagcgaggatagtcttcaaacttttgaagatacc 998

                                                                        
Query: 190  atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
            |  | | ||||| || |||||||||||||| ||| || |||||||| |||||||||||||
Sbjct: 997  aattgtaagtttctactgctgcaaatgacaggttcgtgatcacaaatatgaacaggaacc 938

                                                                        
Query: 250  acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
            |||||| |||||||  | |||||||||| | ||||||||| |||||||| ||||||||||
Sbjct: 937  acactggaatgtcttctgcaccactagcaaccaacatgccaaaatatattactagttcag 878

                                                                        
Query: 310  caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
            ||||||||||||| ||||| || ||| |||| ||||||||||||||||| ||||||||||
Sbjct: 877  caaggtaatgaggacaagagacccgattaaagcagtcaccacaaggaattacatattcat 818

                                                                        
Query: 370  cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
            || ||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 817  cataatctttgtgttcacgcaacgatccaagaattgcatggcaacggatctgatggaggg 758

                                                               
Query: 430  atccccaaatgaatataacagcacctatccattggcaccaccccaacttta 480
            | ||||||||||||||||||||||||||||| |||  ||||||||||||||
Sbjct: 757  aaccccaaatgaatataacagcacctatccactgggtccaccccaacttta 707
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>gb|AY110472.1| Zea mays CL34681_1 mRNA sequence
          Length = 641

 Score =  365 bits (184), Expect = 9e-98
 Identities = 308/351 (87%)
 Strand = Plus / Minus

                                                                       
Query: 130 atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
           |||||||||||||||| || || |||||||| ||||| |||||||| ||| |||| ||||
Sbjct: 635 atacaaatggaatgattgcgtaacgagaacgagggtaatcttcaaatttccgaagatacc 576

                                                                       
Query: 190 atctatgagtttgtattgctgcaaatgacaagtttgttatcacaaaaatgaacaggaacc 249
           || |||| |||||||  |||||||| |||||||||||||||||      | | |||||||
Sbjct: 575 atttatgtgtttgtaccgctgcaaaggacaagtttgttatcacnnnnnggtataggaacc 516

                                                                       
Query: 250 acactgaaatgtctgatccaccactagctatcaacatgcccaaatatatgactagttcag 309
           |||| ||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||
Sbjct: 515 acaccgaaatgtctgatccaccgctagctaccaacatgccaaaatatattactagttcag 456

                                                                       
Query: 310 caaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaataacatattcat 369
           |||||||||||||| | |||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 455 caaggtaatgaggggacgacacacgactaaaccagtcgccgcaaggaattacatattcat 396

                                                                       
Query: 370 cagaatctttattttcgcgcaacgatccaagaattgcatggcagcggatctgatggaggg 429
           |||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 395 cagaatctttgtgttcacgcaatgatccaagaattgcatggcagcggatctgatggagtg 336

                                                              
Query: 430 atccccaaatgaatataacagcacctatccattggcaccaccccaacttta 480
           | ||||| ||||| |||| |||||| ||||| ||||||||||||| |||||
Sbjct: 335 agccccagatgaaaataatagcaccaatccactggcaccaccccagcttta 285
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>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04,
              complete sequence
          Length = 164567

 Score =  127 bits (64), Expect = 4e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                          
Query: 300    actagttcagcaaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaata 359
              ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| 
Sbjct: 114887 actagttcagcaaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaatt 114828

                                  
Query: 360    acatattcatcagaatcttt 379
              ||||||||||||||||||||
Sbjct: 114827 acatattcatcagaatcttt 114808



 Score =  123 bits (62), Expect = 6e-25
 Identities = 77/82 (93%)
 Strand = Plus / Minus

                                                                          
Query: 397    caagaattgcatggcagcggatctgatggagggatccccaaatgaatataacagcaccta 456
              |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 114360 caagaattgcatggcaacggatctgatggagggaaccccaaatgaatataacagcaccta 114301

                                    
Query: 457    tccattggcaccaccccaactt 478
              |||| |||  ||||||||||||
Sbjct: 114300 tccactgggtccaccccaactt 114279



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                          
Query: 130    atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
              |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 115848 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 115789

                                                   
Query: 190    atctatgagtttgtattgctgcaaatgacaagtttgt 226
              |  | ||||||| || |||||||||||||| ||||||
Sbjct: 115788 acttgtgagtttctactgctgcaaatgacaggtttgt 115752



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                          
Query: 230    cacaaaaatgaacaggaaccacactgaaatgtctgatccaccactagctatcaacatgcc 289
              |||||| | ||||||||||||||||| |||||||  |||||||||||| | |||||||||
Sbjct: 115616 cacaaatacgaacaggaaccacactggaatgtcttctccaccactagcaaccaacatgcc 115557

                       
Query: 290    caaatatat 298
               ||||||||
Sbjct: 115556 aaaatatat 115548
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  127 bits (64), Expect = 4e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                            
Query: 300      actagttcagcaaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaata 359
                ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| 
Sbjct: 29048229 actagttcagcaaggtaatgagggcaagagactcgattaaaccagtcaccacaaggaatt 29048170

                                    
Query: 360      acatattcatcagaatcttt 379
                ||||||||||||||||||||
Sbjct: 29048169 acatattcatcagaatcttt 29048150



 Score =  123 bits (62), Expect = 6e-25
 Identities = 77/82 (93%)
 Strand = Plus / Minus

                                                                            
Query: 397      caagaattgcatggcagcggatctgatggagggatccccaaatgaatataacagcaccta 456
                |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 29047702 caagaattgcatggcaacggatctgatggagggaaccccaaatgaatataacagcaccta 29047643

                                      
Query: 457      tccattggcaccaccccaactt 478
                |||| |||  ||||||||||||
Sbjct: 29047642 tccactgggtccaccccaactt 29047621



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                            
Query: 130      atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
                |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 29049190 atacaaatggaatgatggcatagcgagagcgaggatagtcttcaaacttttgaagatacc 29049131

                                                     
Query: 190      atctatgagtttgtattgctgcaaatgacaagtttgt 226
                |  | ||||||| || |||||||||||||| ||||||
Sbjct: 29049130 acttgtgagtttctactgctgcaaatgacaggtttgt 29049094



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                            
Query: 230      cacaaaaatgaacaggaaccacactgaaatgtctgatccaccactagctatcaacatgcc 289
                |||||| | ||||||||||||||||| |||||||  |||||||||||| | |||||||||
Sbjct: 29048958 cacaaatacgaacaggaaccacactggaatgtcttctccaccactagcaaccaacatgcc 29048899

                         
Query: 290      caaatatat 298
                 ||||||||
Sbjct: 29048898 aaaatatat 29048890
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  127 bits (64), Expect = 4e-26
 Identities = 79/84 (94%)
 Strand = Plus / Minus

                                                                            
Query: 397      caagaattgcatggcagcggatctgatggagggatccccaaatgaatataacagcaccta 456
                |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18376194 caagaattgcatggcaacggatctgatggagggaaccccaaatgaatataacagcaccta 18376135

                                        
Query: 457      tccattggcaccaccccaacttta 480
                |||| |||  ||||||||||||||
Sbjct: 18376134 tccactgggtccaccccaacttta 18376111



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                            
Query: 300      actagttcagcaaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaata 359
                ||||||||||||||||||||||| ||||| || ||| |||| ||||||||||||||||| 
Sbjct: 18376726 actagttcagcaaggtaatgaggacaagagacccgattaaagcagtcaccacaaggaatt 18376667

                                                      
Query: 360      acatattcatcagaatctttattttcgcgcaacgatcc 397
                |||||||||||| ||||||| | ||| |||||||||||
Sbjct: 18376666 acatattcatcataatctttgtgttcacgcaacgatcc 18376629



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 130      atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
                |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 18377695 atacaaatggaatgatagcatagcgagagcgaggatagtcttcaaacttttgaagatacc 18377636

                                              
Query: 190      atctatgagtttgtattgctgcaaatgaca 219
                |  | | ||||| || ||||||||||||||
Sbjct: 18377635 aattgtaagtttctactgctgcaaatgaca 18377606



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                            
Query: 230      cacaaaaatgaacaggaaccacactgaaatgtctgatccaccactagctatcaacatgcc 289
                |||||| ||||||||||||||||||| |||||||  | |||||||||| | |||||||||
Sbjct: 18377463 cacaaatatgaacaggaaccacactggaatgtcttctgcaccactagcaaccaacatgcc 18377404

                         
Query: 290      caaatatat 298
                 ||||||||
Sbjct: 18377403 aaaatatat 18377395
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>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0038F10
          Length = 153929

 Score =  127 bits (64), Expect = 4e-26
 Identities = 79/84 (94%)
 Strand = Plus / Minus

                                                                          
Query: 397    caagaattgcatggcagcggatctgatggagggatccccaaatgaatataacagcaccta 456
              |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 105689 caagaattgcatggcaacggatctgatggagggaaccccaaatgaatataacagcaccta 105630

                                      
Query: 457    tccattggcaccaccccaacttta 480
              |||| |||  ||||||||||||||
Sbjct: 105629 tccactgggtccaccccaacttta 105606



 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                          
Query: 300    actagttcagcaaggtaatgagggcaagacacacgactaaaccagtcaccacaaggaata 359
              ||||||||||||||||||||||| ||||| || ||| |||| ||||||||||||||||| 
Sbjct: 106221 actagttcagcaaggtaatgaggacaagagacccgattaaagcagtcaccacaaggaatt 106162

                                                    
Query: 360    acatattcatcagaatctttattttcgcgcaacgatcc 397
              |||||||||||| ||||||| | ||| |||||||||||
Sbjct: 106161 acatattcatcataatctttgtgttcacgcaacgatcc 106124



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                          
Query: 130    atacaaatggaatgatcgcatagcgagaacgggggtagtcttcaaacttctgaaggtacc 189
              |||||||||||||||| ||||||||||| || || |||||||||||||| ||||| ||||
Sbjct: 107190 atacaaatggaatgatagcatagcgagagcgaggatagtcttcaaacttttgaagatacc 107131

                                            
Query: 190    atctatgagtttgtattgctgcaaatgaca 219
              |  | | ||||| || ||||||||||||||
Sbjct: 107130 aattgtaagtttctactgctgcaaatgaca 107101



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                          
Query: 230    cacaaaaatgaacaggaaccacactgaaatgtctgatccaccactagctatcaacatgcc 289
              |||||| ||||||||||||||||||| |||||||  | |||||||||| | |||||||||
Sbjct: 106958 cacaaatatgaacaggaaccacactggaatgtcttctgcaccactagcaaccaacatgcc 106899

                       
Query: 290    caaatatat 298
               ||||||||
Sbjct: 106898 aaaatatat 106890
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>gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 194198

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 436   aaatgaatataacagcacctatc 458
             |||||||||||||||||||||||
Sbjct: 67134 aaatgaatataacagcacctatc 67112
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>ref|XM_660835.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10028)
           partial mRNA
          Length = 1566

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 124 gctacaatacaaatggaatgat 145
           ||||||||||||||||||||||
Sbjct: 11  gctacaatacaaatggaatgat 32
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>emb|CR847811.1| Human DNA sequence from clone XX-NCIH2171_5AI03, complete sequence
          Length = 109177

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   gcacacaaggaatgcctgtaga 122
             ||||||||||||||||||||||
Sbjct: 65315 gcacacaaggaatgcctgtaga 65336
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>emb|CR847576.1| Human DNA sequence from clone XX-NCIH2171_5M12, complete sequence
          Length = 98856

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   gcacacaaggaatgcctgtaga 122
             ||||||||||||||||||||||
Sbjct: 68489 gcacacaaggaatgcctgtaga 68510
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>gb|AC108925.8| Homo sapiens chromosome 8, clone RP11-1136L8, complete sequence
          Length = 159104

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 101  gcacacaaggaatgcctgtaga 122
            ||||||||||||||||||||||
Sbjct: 3943 gcacacaaggaatgcctgtaga 3964
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>gb|AC104370.7| Homo sapiens chromosome 8, clone RP11-367L7, complete sequence
          Length = 169460

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    gcacacaaggaatgcctgtaga 122
              ||||||||||||||||||||||
Sbjct: 100177 gcacacaaggaatgcctgtaga 100198
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>ref|XM_637581.1| Dictyostelium discoideum Ras GTPase (DDB0229980), partial mRNA
          Length = 2529

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 359  aacatattcatcagaatctttattt 383
            |||||||||| ||||||||||||||
Sbjct: 1074 aacatattcaacagaatctttattt 1050
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>gb|U88174.1| Caenorhabditis elegans cosmid M01A10, complete sequence
          Length = 25230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 117  tgtagatgctacaatacaaat 137
            |||||||||||||||||||||
Sbjct: 1813 tgtagatgctacaatacaaat 1833
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>gb|AC134433.3| Mus musculus BAC clone RP24-405A4 from chromosome Y, complete sequence
          Length = 124148

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 174    aacttctgaaggtaccatctatgag 198
              |||||||| ||||||||||||||||
Sbjct: 110417 aacttctgtaggtaccatctatgag 110393
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>gb|AC145392.2| Mus musculus BAC clone RP24-171E5 from chromosome Y, complete sequence
          Length = 162238

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 174    aacttctgaaggtaccatctatgag 198
              |||||||| ||||||||||||||||
Sbjct: 113420 aacttctgtaggtaccatctatgag 113444
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>gb|AC117267.2| Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4,
            complete sequence
          Length = 25769

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 359  aacatattcatcagaatctttattt 383
            |||||||||| ||||||||||||||
Sbjct: 4128 aacatattcaacagaatctttattt 4104
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>emb|AL353574.8| Human DNA sequence from clone RP11-551M18 on chromosome 13 Contains the
             5' end of the SLC15A1 gene for solute carrier family 15
             (oligopeptide transporter) member 1 and a CpG island,
             complete sequence
          Length = 89515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   tgtattgctgcaaatgacaag 221
             |||||||||||||||||||||
Sbjct: 40823 tgtattgctgcaaatgacaag 40803
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>gb|AY321356.1| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme A reductase (HMGCR)
             gene, complete cds
          Length = 28079

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tcacatttacatgaatatct 50
             ||||||||||||||||||||
Sbjct: 17714 tcacatttacatgaatatct 17733
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>gb|AC186184.1| Pan troglodytes chromosome UNKNOWN clone CH251-131M1, complete sequence
          Length = 135932

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    ttgctgcaaatgacaagttt 224
              ||||||||||||||||||||
Sbjct: 114629 ttgctgcaaatgacaagttt 114648
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>gb|AC120386.12| Mus musculus chromosome 9, clone RP24-294A16, complete sequence
          Length = 207310

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   aggaataacatattcatcag 372
             ||||||||||||||||||||
Sbjct: 82057 aggaataacatattcatcag 82076
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>gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) gene, complete cds
          Length = 87633

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   tcatcagaatctttattttc 385
             ||||||||||||||||||||
Sbjct: 73846 tcatcagaatctttattttc 73827
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>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the
              5' end of the TUBGCP2 gene for tubulin gamma complex
              associated protein 2, the gene for a novel protein, the
              gene for calcyon D1 dopamine receptor-interacting protein
              (CALCYON), an autointegration factor (BANF1) pseudogene, a
              novel gene, the gene for uterine-specific proline-rich
              acidic protein (UPA), gene FLJ34392, the ECHS1 gene for
              enoyl Coenzyme A hydratase, short chain, 1, mitachondrial,
              the gene for peroxisomal N1-acetyl-spermine/spermidine
              oxidase (PAO), a novel gene, the 5' end of a novel gene
              (LOC92170) and ten CpG islands, complete sequence
          Length = 116311

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    gtttgtattgctgcaaatgacaag 221
              ||||||||| ||||||||||||||
Sbjct: 113156 gtttgtattactgcaaatgacaag 113179
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>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence
          Length = 214509

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     atttacatgaatatctttta 54
              ||||||||||||||||||||
Sbjct: 189671 atttacatgaatatctttta 189690
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>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown,
             complete sequence
          Length = 175955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ttgctgcaaatgacaagttt 224
             ||||||||||||||||||||
Sbjct: 21293 ttgctgcaaatgacaagttt 21274
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>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence
          Length = 163612

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tcacatttacatgaatatct 50
             ||||||||||||||||||||
Sbjct: 12944 tcacatttacatgaatatct 12963
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>gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, complete sequence
          Length = 214025

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    catttacatgaatatctttt 53
             ||||||||||||||||||||
Sbjct: 54788 catttacatgaatatctttt 54807
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>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence
          Length = 169812

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    tcatcagaatctttattttc 385
              ||||||||||||||||||||
Sbjct: 119498 tcatcagaatctttattttc 119517
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>gb|AC008897.7|AC008897 Homo sapiens chromosome 5 clone CTD-2235C13, complete sequence
          Length = 117026

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    tcacatttacatgaatatct 50
             ||||||||||||||||||||
Sbjct: 48865 tcacatttacatgaatatct 48846
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>gb|AC092587.3| Homo sapiens BAC clone RP11-38C17 from 2, complete sequence
          Length = 69480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  tctgaaggtaccatctatga 197
            ||||||||||||||||||||
Sbjct: 8836 tctgaaggtaccatctatga 8855
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>gb|AC099684.7| Homo sapiens chromosome 17, clone CTD-2545H1, complete sequence
          Length = 166138

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    atccattggcaccaccccaa 475
              ||||||||||||||||||||
Sbjct: 142370 atccattggcaccaccccaa 142351
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>emb|BX950852.8| Zebrafish DNA sequence from clone DKEY-154B17 in linkage group 19,
              complete sequence
          Length = 242320

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     gacattttaacttacaagct 29
              ||||||||||||||||||||
Sbjct: 104494 gacattttaacttacaagct 104513
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>gb|AC074310.29| Mus musculus strain C57BL/6J chromosome 1 clone rp23-137i20, complete
              sequence
          Length = 222328

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     atttacatgaatatctttta 54
              ||||||||||||||||||||
Sbjct: 118564 atttacatgaatatctttta 118545
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>gb|AY862404.1| Vibrio cholerae plasmid pKA1 transposase (tnp) gene, partial cds; and
            unknown genes
          Length = 3691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  ttgtattgctgcaaatgaca 219
            ||||||||||||||||||||
Sbjct: 1671 ttgtattgctgcaaatgaca 1652
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>dbj|AP002409.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-781P6, complete
             sequence
          Length = 180566

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   accacactgaaatgtctgat 266
             ||||||||||||||||||||
Sbjct: 11835 accacactgaaatgtctgat 11816
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>dbj|AP005210.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-146G7, complete
              sequence
          Length = 180737

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    accacactgaaatgtctgat 266
              ||||||||||||||||||||
Sbjct: 125536 accacactgaaatgtctgat 125517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,352,392
Number of Sequences: 3902068
Number of extensions: 4352392
Number of successful extensions: 84499
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84387
Number of HSP's gapped (non-prelim): 112
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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