>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                           
Query: 423     gagccgggcatcccacagtgttgcgcggcgcgcggctcgtcactggccttccacgcaagc 482
               ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 7651769 gagcctggcatcccgcagtgctgcgcggcgcgcggctcgtcgctggccttccacgccagc 7651828

                                 
Query: 483     tcgccgcccttgtcgagg 500
               ||||||||||||||||||
Sbjct: 7651829 tcgccgcccttgtcgagg 7651846



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 180     ccgctgtcgtatgggctgttgtccacca 207
               ||||||||||| ||||||||||||||||
Sbjct: 7651466 ccgctgtcgtacgggctgttgtccacca 7651493

>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                         
Query: 423   gagccgggcatcccacagtgttgcgcggcgcgcggctcgtcactggccttccacgcaagc 482
             ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 63521 gagcctggcatcccgcagtgctgcgcggcgcgcggctcgtcgctggccttccacgccagc 63462

                               
Query: 483   tcgccgcccttgtcgagg 500
             ||||||||||||||||||
Sbjct: 63461 tcgccgcccttgtcgagg 63444



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 180   ccgctgtcgtatgggctgttgtccacca 207
             ||||||||||| ||||||||||||||||
Sbjct: 63824 ccgctgtcgtacgggctgttgtccacca 63797

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                           
Query: 423     gagccgggcatcccacagtgttgcgcggcgcgcggctcgtcactggccttccacgcaagc 482
               ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 7649604 gagcctggcatcccgcagtgctgcgcggcgcgcggctcgtcgctggccttccacgccagc 7649663

                                 
Query: 483     tcgccgcccttgtcgagg 500
               ||||||||||||||||||
Sbjct: 7649664 tcgccgcccttgtcgagg 7649681



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 180     ccgctgtcgtatgggctgttgtccacca 207
               ||||||||||| ||||||||||||||||
Sbjct: 7649301 ccgctgtcgtacgggctgttgtccacca 7649328

>dbj|AK064707.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A07, full
           insert sequence
          Length = 1269

 Score =  115 bits (58), Expect = 1e-22
 Identities = 73/78 (93%)
 Strand = Plus / Minus

                                                                       
Query: 423 gagccgggcatcccacagtgttgcgcggcgcgcggctcgtcactggccttccacgcaagc 482
           ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 667 gagcctggcatcccgcagtgctgcgcggcgcgcggctcgtcgctggccttccacgccagc 608

                             
Query: 483 tcgccgcccttgtcgagg 500
           ||||||||||||||||||
Sbjct: 607 tcgccgcccttgtcgagg 590



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 180 ccgctgtcgtatgggctgttgtccacca 207
           ||||||||||| ||||||||||||||||
Sbjct: 970 ccgctgtcgtacgggctgttgtccacca 943

>ref|NM_194925.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNAa0034B05.10), mRNA
          Length = 1125

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 180  ccgctgtcgtatgggctgttgtccacca 207
            ||||||||||| ||||||||||||||||
Sbjct: 1055 ccgctgtcgtacgggctgttgtccacca 1028

>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0004E08, complete sequence
          Length = 158294

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 180   ccgctgtcgtatgggctgttgtccacca 207
             ||||||||||| ||||||||||||||||
Sbjct: 34094 ccgctgtcgtacgggctgttgtccacca 34067

>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 180   ccgctgtcgtatgggctgttgtccacca 207
             ||||||||||| ||||||||||||||||
Sbjct: 99749 ccgctgtcgtacgggctgttgtccacca 99722

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 180     ccgctgtcgtatgggctgttgtccacca 207
               ||||||||||| ||||||||||||||||
Sbjct: 3442965 ccgctgtcgtacgggctgttgtccacca 3442938

>dbj|AK108770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H05, full
            insert sequence
          Length = 1436

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 180  ccgctgtcgtatgggctgttgtccacca 207
            ||||||||||| ||||||||||||||||
Sbjct: 1129 ccgctgtcgtacgggctgttgtccacca 1102

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 180     ccgctgtcgtatgggctgttgtccacca 207
               ||||||||||| ||||||||||||||||
Sbjct: 3442886 ccgctgtcgtacgggctgttgtccacca 3442859

>emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chromosome 11 Contains the
             Psme4 gene for proteasome (prosome, macropain) activator
             subunit 4, the Gpr75 gene for G protein-coupled receptor
             75, a novel pseudogene, a PDZ and LIM domain 1 (elfin)
             (Pdlim1) pseudogene, two novel genes, the 5' end of the
             Asb3 gene for ankyrin repeat and SOCS box-containing
             protein 3, a methyl-CpG binding domain protein 2
             interacting protein (Mbdin) pseudogene and a CpG island,
             complete sequence
          Length = 244971

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    ccagaaataataataagaaatt 47
             ||||||||||||||||||||||
Sbjct: 60372 ccagaaataataataagaaatt 60393

>dbj|AB162297.1| Uncultured bacterium nirS gene for nitrite reductase, partial cds,
           clone:S-Z41
          Length = 776

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 477 gcaagctcgccgcccttgtcga 498
           ||||||||||||||||||||||
Sbjct: 275 gcaagctcgccgcccttgtcga 296

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 381     accggctccgcgaagggcggca 402
               ||||||||||||||||||||||
Sbjct: 4131745 accggctccgcgaagggcggca 4131724

>emb|AL137251.5| Human DNA sequence from clone RP1-141N5 on chromosome 6 Contains the 3'
             end of the gene for KIAA1913 protein, complete sequence
          Length = 122354

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   agagctgacacccagtgcaac 142
             |||||||||||||||||||||
Sbjct: 15205 agagctgacacccagtgcaac 15225

>dbj|AB100014.1| Uncultured bacterium gene for 16S rRNA, partial sequences, clone:
           IndB4-27
          Length = 1298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 346 cctgtccaaagggcaggttgc 366
           |||||||||||||||||||||
Sbjct: 143 cctgtccaaagggcaggttgc 123

>gb|AC151754.1| Ornithorhynchus anatinus chromosome UNK clone OABb-469A1, complete
              sequence
          Length = 138437

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 341    tggttcctgtccaaagggcaggtt 364
              ||||| ||||||||||||||||||
Sbjct: 136471 tggtttctgtccaaagggcaggtt 136494

>gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, complete sequence
          Length = 232085

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  gagggccatgacaatggcag 123
            ||||||||||||||||||||
Sbjct: 5825 gagggccatgacaatggcag 5806

>gb|AY509596.1| Homo sapiens transcription factor Dp-2 (E2F dimerization partner 2)
             (TFDP2) gene, complete cds
          Length = 81085

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tccactgcatgcccctgccc 265
             ||||||||||||||||||||
Sbjct: 72006 tccactgcatgcccctgccc 72025

>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09,
              complete sequence
          Length = 156776

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     caagagtgcatgcacacaaa 94
              ||||||||||||||||||||
Sbjct: 130807 caagagtgcatgcacacaaa 130826

>gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0014F09,
             complete sequence
          Length = 151345

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    caagagtgcatgcacacaaa 94
             ||||||||||||||||||||
Sbjct: 26454 caagagtgcatgcacacaaa 26473

>gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 215077

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  tccactgcatgcccctgccc 265
            ||||||||||||||||||||
Sbjct: 2968 tccactgcatgcccctgccc 2987

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   tgcgcggcgcgcggctcgtc 463
             ||||||||||||||||||||
Sbjct: 69374 tgcgcggcgcgcggctcgtc 69393

>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2
             Contains 2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    agaaataataataagaaatt 47
             ||||||||||||||||||||
Sbjct: 97136 agaaataataataagaaatt 97155

>gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, complete sequence
          Length = 159548

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   gagggccatgacaatggcag 123
             ||||||||||||||||||||
Sbjct: 43645 gagggccatgacaatggcag 43626

>gb|AF277675.1| Taura syndrome virus, complete genome
          Length = 10205

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   aaattcgagaaatcaccagc 62
            ||||||||||||||||||||
Sbjct: 5944 aaattcgagaaatcaccagc 5925

>gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, complete sequence
          Length = 138594

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    gggcaggttgctgcttccat 375
              ||||||||||||||||||||
Sbjct: 108753 gggcaggttgctgcttccat 108734

>ref|XM_692137.1| PREDICTED: Danio rerio similar to triple functional domain (PTPRF
           interacting) (LOC568784), mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 gcttctggaagcggcagagc 307
           ||||||||||||||||||||
Sbjct: 873 gcttctggaagcggcagagc 892

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 75       caagagtgcatgcacacaaa 94
                ||||||||||||||||||||
Sbjct: 11805167 caagagtgcatgcacacaaa 11805186

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 231      gtctgccccacgtcctccac 250
                ||||||||||||||||||||
Sbjct: 16504866 gtctgccccacgtcctccac 16504847

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     ggaccctgccgcttctggaa 297
               ||||||||||||||||||||
Sbjct: 2110368 ggaccctgccgcttctggaa 2110387

>gb|AC012668.13| Homo sapiens BAC clone RP11-458D8 from 2, complete sequence
          Length = 192396

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    aatggcagagctgacaccca 135
              ||||||||||||||||||||
Sbjct: 154067 aatggcagagctgacaccca 154048

>gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158066

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ccagaaataataataagaaa 45
             ||||||||||||||||||||
Sbjct: 13483 ccagaaataataataagaaa 13502

>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gtctgccccacgtcctccac 250
             ||||||||||||||||||||
Sbjct: 25536 gtctgccccacgtcctccac 25517

>dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125L14, full
           insert sequence
          Length = 4166

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 gcaggttgctgcttccatgc 377
           ||||||||||||||||||||
Sbjct: 630 gcaggttgctgcttccatgc 649

>emb|BX957244.15| Zebrafish DNA sequence from clone CH211-13C6 in linkage group 19,
            complete sequence
          Length = 162321

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  gcttctggaagcggcagagc 307
            ||||||||||||||||||||
Sbjct: 9557 gcttctggaagcggcagagc 9538

>emb|X69753.1|CHRDRBCL R.damascena chloroplast rbcL gene for
           ribulose-1,5-biphosphate-carboxylase and promoter region
          Length = 946

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  aaataataataagaaattcg 49
           ||||||||||||||||||||
Sbjct: 505 aaataataataagaaattcg 486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,958,223
Number of Sequences: 3902068
Number of extensions: 4958223
Number of successful extensions: 92625
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92253
Number of HSP's gapped (non-prelim): 372
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)