ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 50 2e-06
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 42 0.001
3MS3L1_MOUSE (Q9WVG9) Male-specific lethal 3-like 1 (MSL3-like 1)... 29 4.9

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 455 LSWMKVTDVLSGDKTFDAVKTPLLAAWVERFSAIDAAKAALP-DVGRLVEF 306
           L W    D L G +  D  +TP LAAW ERF A DAAK  +P D  +L+EF
Sbjct: 173 LGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -2

Query: 446 MKVTDVLSGDKTFDAVKTPLLAAWVERFSAIDAAKAALPDVGRLVEF 306
           ++  + L G    DA  TPLL  W +RF+A  AAK  LPD  ++V+F
Sbjct: 175 LRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>MS3L1_MOUSE (Q9WVG9) Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific|
           lethal-3 homolog 1)
          Length = 525

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 424 PVTRPSTPSRLRSWPRGWSASARSTRQRRPCRMWAGWLSSPRHER 290
           P   P+TP R ++ P    +  RSTR    C   +   SSP+ +R
Sbjct: 332 PTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKR 376


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,345,801
Number of Sequences: 219361
Number of extensions: 904717
Number of successful extensions: 2063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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