ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480001.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
4dbj|AK102951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5gb|AY224458.1| Oryza sativa (japonica cultivar-group) isolate 23... 48 0.017
6emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, c... 44 0.27
7gb|AC104810.5| Homo sapiens BAC clone RP11-641D2 from 4, complet... 42 1.1
8emb|BX005280.14| Zebrafish DNA sequence from clone CH211-256J23 ... 42 1.1
9gb|AC139240.4| Mus musculus BAC clone RP24-128J14 from chromosom... 40 4.2
10emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chrom... 40 4.2
11gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, comp... 40 4.2
12gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, comple... 40 4.2
13emb|BX323458.7| Zebrafish DNA sequence from clone DKEYP-69B9 in ... 40 4.2
14emb|AL928695.23| Zebrafish DNA sequence from clone CH211-217M19 ... 40 4.2
15gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 40 4.2
16gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, comple... 40 4.2
17emb|Z81125.1|CET22A3 Caenorhabditis elegans Cosmid T22A3, comple... 40 4.2
18gb|AC139112.4| Cercopithecus aethiops clone CH252-467C20, comple... 40 4.2
19emb|AL645723.11| Mouse DNA sequence from clone RP23-423N6 on chr... 40 4.2 
>ref|XM_480001.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 270 aagcatcacgcaacaggggggcaagcttcgctgtcctttgaggggtcgact 320
           |||||| |||| ||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 853 aagcattacgcgacaggcgggcacgcttcgctgtccttggaggtgtcgact 803



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   cagagaacaagaacgagcattctttctttctcc 76
            ||||||||||||| |||||||||| ||||||||
Sbjct: 1082 cagagaacaagaatgagcattcttcctttctcc 1050
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                  
Query: 270     aagcatcacgcaacaggggggcaagcttcgctgtcctttgaggggtcgact 320
               |||||| |||| ||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 2142851 aagcattacgcgacaggcgggcacgcttcgctgtccttggaggtgtcgact 2142901



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 44      cagagaacaagaacgagcattctttctttctcc 76
               ||||||||||||| |||||||||| ||||||||
Sbjct: 2142622 cagagaacaagaatgagcattcttcctttctcc 2142654
to top
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 270   aagcatcacgcaacaggggggcaagcttcgctgtcctttgaggggtcgact 320
             |||||| |||| ||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 21113 aagcattacgcgacaggcgggcacgcttcgctgtccttggaggtgtcgact 21163



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 44    cagagaacaagaacgagcattctttctttctcc 76
             ||||||||||||| |||||||||| ||||||||
Sbjct: 20884 cagagaacaagaatgagcattcttcctttctcc 20916
to top
>dbj|AK102951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115D14, full
           insert sequence
          Length = 1082

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 270 aagcatcacgcaacaggggggcaagcttcgctgtcctttgaggggtcgact 320
           |||||| |||| ||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 852 aagcattacgcgacaggcgggcacgcttcgctgtccttggaggtgtcgact 802



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   cagagaacaagaacgagcattctttctttctcc 76
            ||||||||||||| |||||||||| ||||||||
Sbjct: 1081 cagagaacaagaatgagcattcttcctttctcc 1049
to top
>gb|AY224458.1| Oryza sativa (japonica cultivar-group) isolate 23494
           helix-loop-helix-like protein mRNA, partial cds
          Length = 651

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 277 acgcaacaggggggcaagcttcgctgtcctttgaggggtcgact 320
           |||| ||||| ||||| |||||||||||||| |||| |||||||
Sbjct: 649 acgcgacaggcgggcacgcttcgctgtccttggaggtgtcgact 606
to top
>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence
          Length = 174143

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 32     ctatatagagatcagagaacaa 53
              ||||||||||||||||||||||
Sbjct: 126061 ctatatagagatcagagaacaa 126082
to top
>gb|AC104810.5| Homo sapiens BAC clone RP11-641D2 from 4, complete sequence
          Length = 165432

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    ctatatagagatcagagaaca 52
             |||||||||||||||||||||
Sbjct: 53121 ctatatagagatcagagaaca 53101
to top
>emb|BX005280.14| Zebrafish DNA sequence from clone CH211-256J23 in linkage group 18,
             complete sequence
          Length = 164570

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   agcattctcctcatcaacaaa 156
             |||||||||||||||||||||
Sbjct: 99680 agcattctcctcatcaacaaa 99660
to top
>gb|AC139240.4| Mus musculus BAC clone RP24-128J14 from chromosome 18, complete
             sequence
          Length = 173054

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    atatagagatcagagaacaa 53
             ||||||||||||||||||||
Sbjct: 45698 atatagagatcagagaacaa 45717
to top
>emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chromosome 9, complete
             sequence
          Length = 124531

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tgcgcaaccaatggatcaaa 220
             ||||||||||||||||||||
Sbjct: 14433 tgcgcaaccaatggatcaaa 14414
to top
>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence
          Length = 209772

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tggcattcaaattggtattc 26
              ||||||||||||||||||||
Sbjct: 120365 tggcattcaaattggtattc 120346
to top
>gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, complete sequence
          Length = 143498

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   acaacaatagttaatctgaa 188
             ||||||||||||||||||||
Sbjct: 65978 acaacaatagttaatctgaa 65997
to top
>emb|BX323458.7| Zebrafish DNA sequence from clone DKEYP-69B9 in linkage group 16,
             complete sequence
          Length = 194378

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaacatggcattcaaattg 20
             ||||||||||||||||||||
Sbjct: 31512 aaaacatggcattcaaattg 31493
to top
>emb|AL928695.23| Zebrafish DNA sequence from clone CH211-217M19 in linkage group 16,
              complete sequence
          Length = 215878

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aaaacatggcattcaaattg 20
              ||||||||||||||||||||
Sbjct: 164650 aaaacatggcattcaaattg 164631
to top
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      acatggcattcaaattggta 23
              ||||||||||||||||||||
Sbjct: 294809 acatggcattcaaattggta 294828
to top
>gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, complete sequence
          Length = 88404

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gcatgacaacaatagttaat 183
             ||||||||||||||||||||
Sbjct: 33232 gcatgacaacaatagttaat 33251
to top
>emb|Z81125.1|CET22A3 Caenorhabditis elegans Cosmid T22A3, complete sequence
          Length = 36051

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   tttctatatagagatcagag 48
            ||||||||||||||||||||
Sbjct: 2321 tttctatatagagatcagag 2302
to top
>gb|AC139112.4| Cercopithecus aethiops clone CH252-467C20, complete sequence
          Length = 172237

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     acatggcattcaaattggta 23
             ||||||||||||||||||||
Sbjct: 80970 acatggcattcaaattggta 80989
to top
>emb|AL645723.11| Mouse DNA sequence from clone RP23-423N6 on chromosome 4, complete
             sequence
          Length = 220638

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    atatagagatcagagaacaa 53
             ||||||||||||||||||||
Sbjct: 96617 atatagagatcagagaacaa 96636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,625,506
Number of Sequences: 3902068
Number of extensions: 3625506
Number of successful extensions: 48737
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48689
Number of HSP's gapped (non-prelim): 48
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top