ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZDH24_HUMAN (Q6UX98) Probable palmitoyltransferase ZDHHC24 (EC 2... 29 6.4
2CYB_CEPNE (Q34179) Cytochrome b 29 8.3

>ZDH24_HUMAN (Q6UX98) Probable palmitoyltransferase ZDHHC24 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 24) (DHHC-24)
          Length = 284

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
 Frame = -3

Query: 306 DPYVRAYFVSG*SSSRGCAMYVT*LRTWSS*QSYVCRSQL--------ASIMCQWRSGSH 151
           DP +R   ++G    +G A              Y C+SQ+        A  +C  R   H
Sbjct: 76  DPSIRGVMLAGRGLGQGWAY------------CYQCQSQVPPRSGHCSACRVCILRRDHH 123

Query: 150 CQ*CHGVTGFGGCFRLFVFCFLCWLIHALAIYLYTVYVGTPSV 22
           C+      GFG  +R F    LC L+HA  + L+   +  P++
Sbjct: 124 CRLLGRCVGFGN-YRPF----LCLLLHAAGVLLHVSVLLGPAL 161



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>CYB_CEPNE (Q34179) Cytochrome b|
          Length = 380

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 105 LFVFCFLCWLIHALAIYLYTVYVGTP 28
           L+VF  LC+L++ L  Y+  +Y+ TP
Sbjct: 225 LWVFVLLCFLLYVLLCYITLMYLRTP 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,697,824
Number of Sequences: 219361
Number of extensions: 1094474
Number of successful extensions: 2812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2811
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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