ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40g01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 363 bits (183), Expect = 4e-97 Identities = 189/191 (98%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 64823 actgaaaagaagagatatataaagagttggcttacactcgccacaagctacatcagagtc 64882 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 64883 acatcagtacattacataatcatcaagagtaagagcagggtccgtctacggacgaaaaca 64942 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64943 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 65002 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 65003 cctagatcgat 65013 Score = 170 bits (86), Expect = 3e-39 Identities = 92/94 (97%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 66389 ctgagatcctgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 66448 Query: 333 gggtcctcacatccgacacgcttgcggaactcta 366 |||||||||||||||||||||||||||||||||| Sbjct: 66449 gggtcctcacatccgacacgcttgcggaactcta 66482 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||| Sbjct: 65041 ccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaactg 65096
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 355 bits (179), Expect = 9e-95 Identities = 188/191 (98%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 102755 actgaaaagatgagatatatcaagagttggcttacactcgccacaagctacatcagagtc 102814 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102815 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 102874 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102875 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 102934 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 102935 cctagatcgat 102945 Score = 109 bits (55), Expect = 9e-21 Identities = 87/95 (91%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 104340 ctgagatcccgcctggaagaagaacaactccgtgaagcagacgaaccgacgtagtcgaac 104399 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 |||||||||| ||||| ||||| |||||||||||| Sbjct: 104400 gggtcctcacaatccggcacgc-tgcggaactcta 104433 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 221 caaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 102971 caaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaactg 103025
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 355 bits (179), Expect = 9e-95 Identities = 188/191 (98%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 11096 actgaaaagaagagatatataaagagttggcttacactcgccacaagctacatcagagtc 11037 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11036 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 10977 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 10976 aacgacaaaagaagaacgacgtccatccttgctatccgagggtgccggcctggaacccat 10917 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 10916 cctagatcgat 10906 Score = 163 bits (82), Expect = 7e-37 Identities = 91/94 (96%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 9538 ctgagatcccgcttggaagaggaatgcctccgtgaagcagacgaaccgacgtagtcgaac 9479 Query: 333 gggtcctcacatccgacacgcttgcggaactcta 366 ||||||||||||||||||||||||| |||||||| Sbjct: 9478 gggtcctcacatccgacacgcttgcagaactcta 9445 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| Sbjct: 10881 ccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaactg 10826
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 339 bits (171), Expect = 5e-90 Identities = 186/191 (97%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 68127 actgaaaagatgagatatataaagagttggcttacactcgccacaggctacatcagagtc 68186 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68187 acataagttcattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 68246 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68247 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 68306 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 68307 cctagatcgat 68317 Score = 141 bits (71), Expect = 2e-30 Identities = 91/95 (95%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 69688 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 69747 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 |||||||||| ||||| ||||| |||||||||||| Sbjct: 69748 gggtcctcacaatccggcacgc-tgcggaactcta 69781 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| Sbjct: 68339 ccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaactg 68394
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 339 bits (171), Expect = 5e-90 Identities = 186/191 (97%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 |||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 327183 actgaacagaacagatatatatagagttggcttacactcgccacaagctacatcagagtc 327124 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327123 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 327064 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327063 aacgagaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 327004 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 327003 cctagatcgat 326993 Score = 311 bits (157), Expect = 1e-81 Identities = 183/191 (95%), Gaps = 3/191 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 131580 actgaaaagaagagatatatatagagttggcttacactcgccacaagctacatcagagtc 131521 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 131520 acatcagtacattacat---catcaagagtaagagcagggtccgactacggaagaaaaca 131464 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 131463 aacgagaaaagaagaacgacgtccatccttgctatcccaggctgccgccctggaacccat 131404 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 131403 cctagatcgat 131393 Score = 151 bits (76), Expect = 3e-33 Identities = 85/88 (96%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 130044 ctgagatcccgcttggaagaagaatgtctccgtgaagcacacgaaccgacgtagtcgaac 129985 Query: 333 gggtcctcacatccgacacgcttgcgga 360 |||||||||||||||||||||||||||| Sbjct: 129984 gggtcctcacatccgacacgcttgcgga 129957 Score = 135 bits (68), Expect = 2e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||| Sbjct: 177377 ctgagatcccgcttggaagaagaatgtctccgtgaagaacacgaaccgacgtagtcgaat 177318 Query: 333 gggtcctcacatccgacacgcttgcgga 360 |||||||||||||||||||||||||||| Sbjct: 177317 gggtcctcacatccgacacgcttgcgga 177290 Score = 109 bits (55), Expect = 9e-21 Identities = 86/95 (90%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||| ||||||||||||| || ||||||| ||||||||| |||||||||||| Sbjct: 325599 ctgagatcccacttggaagaagaacaactccgtgaagtagacgaaccaacgtagtcgaac 325540 Query: 333 gggtcctcaca-tccgacacgcttgcggaactcta 366 ||||||||||| ||||||||||||||| ||||||| Sbjct: 325539 gggtcctcacattccgacacgcttgcgaaactcta 325505 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct: 326968 ccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaactg 326913 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct: 131371 ccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaactg 131316
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 329 bits (166), Expect = 5e-87 Identities = 187/193 (96%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaa--gagttggcttacactcaccacaagctacatcagag 58 ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| Sbjct: 4219 actgaaaagaagagatatatatacagagttggcttacactcgccacaagctacatcagag 4160 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4159 tcacatcagtacattacatcatcatcaagagtaagagcagggtccgactacggacgaaaa 4100 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4099 caaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 4039 atcctagatcgat 4027 Score = 149 bits (75), Expect = 1e-32 Identities = 91/95 (95%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 | |||||||| ||||| |||||||||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactcta 2561 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4002 ccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 329 bits (166), Expect = 5e-87 Identities = 187/193 (96%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaa--gagttggcttacactcaccacaagctacatcagag 58 ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| Sbjct: 4219 actgaaaagaagagatatatatacagagttggcttacactcgccacaagctacatcagag 4160 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4159 tcacatcagtacattacatcatcatcaagagtaagagcagggtccgactacggacgaaaa 4100 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4099 caaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 4039 atcctagatcgat 4027 Score = 319 bits (161), Expect = 5e-84 Identities = 187/193 (96%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatata-aagagttggcttacactcaccacaagctacatcagagt 59 ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct: 11756 actgaaaagaagagatatatagaagagttggcttacactcgccacaagttacatcagagt 11697 Query: 60 cacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11696 cacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaac 11637 Query: 120 aaacga-caaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11636 aaacgagaaaaataagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 11577 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 11576 atcctagatcgat 11564 Score = 149 bits (75), Expect = 1e-32 Identities = 91/95 (95%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 | |||||||| ||||| |||||||||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactcta 2561 Score = 111 bits (56), Expect = 2e-21 Identities = 56/56 (100%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11542 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 11487 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4002 ccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 274 tgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaacg 333 ||||||||||||||||||||||| || ||| || | | |||| |||||||||||| Sbjct: 10185 tgagatcccgcttggaagaagaacaactcggtggagtcggcaaaccatcgtagtcgaacg 10126 Query: 334 ggtcctcacatccgacacgcttgcggaactcta 366 ||||||||| ||||||||||||||||||||||| Sbjct: 10125 ggtcctcacttccgacacgcttgcggaactcta 10093
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 315 bits (159), Expect = 8e-83 Identities = 183/191 (95%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaagagttggcttacactcaccacaagctacatcagagtc 60 |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 16353 actgaaaagaggagatatataaagagttggcttacactcgccaaaagctacatcagagtc 16412 Query: 61 acatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaaca 120 | |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 16413 gcttcagtacattacataaacatgaagagtaagagcagggtccgactacagacgaaaaca 16472 Query: 121 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16473 aacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacccat 16532 Query: 181 cctagatcgat 191 ||||||||||| Sbjct: 16533 cctagatcgat 16543 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 17918 ctgagatcccgcttggaagaagaatgcctgcgtgaagctgacgaaccgacgtagtcgaac 17977 Query: 333 gggtcctcaca 343 ||||||||||| Sbjct: 17978 gggtcctcaca 17988 Score = 111 bits (56), Expect = 2e-21 Identities = 56/56 (100%) Strand = Plus / Plus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16568 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 16623
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 313 bits (158), Expect = 3e-82 Identities = 185/193 (95%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaa--gagttggcttacactcaccacaagctacatcagag 58 |||||||||| |||||||||| | || ||||||||||||| |||||||||||||||||| Sbjct: 10579 actgaaaagatgagatatatatattgaattggcttacactcgccacaagctacatcagag 10520 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10519 tcacatcaatacattacataaacatcaagagtaagagcagggtccgactacggacgaaaa 10460 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10459 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 10400 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 10399 atcctagatcgat 10387 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||| Sbjct: 10362 ccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaactg 10307
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 313 bits (158), Expect = 3e-82 Identities = 185/193 (95%), Gaps = 2/193 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatataaa--gagttggcttacactcaccacaagctacatcagag 58 |||||||||| |||||||||| | || ||||||||||||| |||||||||||||||||| Sbjct: 3022 actgaaaagatgagatatatatattgaattggcttacactcgccacaagctacatcagag 2963 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2962 tcacatcaatacattacataaacatcaagagtaagagcagggtccgactacggacgaaaa 2903 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2902 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 2843 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 2842 atcctagatcgat 2830 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||| Sbjct: 2805 ccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaactg 2750
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 305 bits (154), Expect = 7e-80 Identities = 185/193 (95%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaagag--ttggcttacactcaccacaagctacatcagag 58 ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 3290 actgaaaaggagagatatataaagagggttggcttacactcgccacaagctacatcagag 3349 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacg-aaa 117 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct: 3350 tcacctcagtacattacataatcatcaagagtaagagcagggtccgactatggatgaaaa 3409 Query: 118 acaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacc 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3410 acaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaacc 3469 Query: 178 catcctagatcga 190 ||||||||||||| Sbjct: 3470 catcctagatcga 3482 Score = 178 bits (90), Expect = 1e-41 Identities = 93/94 (98%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 4859 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 4918 Query: 333 gggtcctcacatccgacacgcttgcggaactcta 366 |||||||||||||||||||||||||||||||||| Sbjct: 4919 gggtcctcacatccgacacgcttgcggaactcta 4952 Score = 79.8 bits (40), Expect = 8e-12 Identities = 49/52 (94%) Strand = Plus / Plus Query: 224 atgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct: 3512 atgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaactg 3563
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 305 bits (154), Expect = 7e-80 Identities = 185/193 (95%), Gaps = 3/193 (1%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataaa--gagttggcttacactcaccacaagctacatcagag 58 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 37261 actgaaaagaagagatatatatacagagttggcttacactcaccacaagctacatcagag 37320 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 37321 tcacatcagtacattacataatcatcaagagtaagagcggggtccgactacggacgaaaa 37380 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37381 caaacgagaaaatga-aacgacgtccatccttgctatcccaggctgccggcctggaaccc 37439 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 37440 atcctagatcgat 37452 Score = 157 bits (79), Expect = 4e-35 Identities = 92/95 (96%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 38836 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaactgacgtagtcgaac 38895 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 |||||||||| |||||||||||||||||||||||| Sbjct: 38896 gggtcctcacaatccgacacgcttgcggaactcta 38930 Score = 99.6 bits (50), Expect = 8e-18 Identities = 53/54 (98%) Strand = Plus / Plus Query: 222 aaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 37479 aaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaactg 37532
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 291 bits (147), Expect = 1e-75 Identities = 182/193 (94%), Gaps = 8/193 (4%) Strand = Plus / Minus Query: 1 actgaaaagaagagatatata--aagagttggcttacactcaccacaagctacatcagag 58 ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| Sbjct: 4213 actgaaaagaagagatatatataaagaattggcttacactcgccacaagctacatcagag 4154 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4153 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 4094 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 ||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4093 caaacgagaa------aacgacgtccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 179 atcctagatcgat 191 ||||||||||||| Sbjct: 4039 atcctagatcgat 4027 Score = 149 bits (75), Expect = 1e-32 Identities = 91/95 (95%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596 Query: 333 gggtcctcac-atccgacacgcttgcggaactcta 366 | |||||||| ||||| |||||||||||||||||| Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactcta 2561 Score = 103 bits (52), Expect = 5e-19 Identities = 55/56 (98%) Strand = Plus / Minus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4002 ccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 3947
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 287 bits (145), Expect = 2e-74 Identities = 180/189 (95%), Gaps = 2/189 (1%) Strand = Plus / Plus Query: 1 actgaaaagaagagatatataa-agagttgg-cttacactcaccacaagctacatcagag 58 ||||||| |||||||||||||| ||| |||| ||||||||| |||||||||||||||||| Sbjct: 2523 actgaaaggaagagatatataatagaattgggcttacactcgccacaagctacatcagag 2582 Query: 59 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 118 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2583 tcacatcagtacattacataatcatcaagggtaagagcagggtccgactacggacgaaaa 2642 Query: 119 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 178 ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2643 caaccgagaaaagaagaacgacgtccatccttgctatcccaggctgccggtctggaaccc 2702 Query: 179 atcctagat 187 ||||||||| Sbjct: 2703 atcctagat 2711 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 220 ccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaactg 275 |||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||| Sbjct: 2767 ccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaactg 2822
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 184 bits (93), Expect = 2e-43 Identities = 149/166 (89%), Gaps = 5/166 (3%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatcagagtcacatcagtacattacata--atcatc 84 |||||||||| || ||||||||||||||||||||||||| ||||||||||| ||| | Sbjct: 2402 ttggcttacaatcgccacaagctacatcagagtcacatcgatacattacatacaatcgcc 2343 Query: 85 aagagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtcc 144 | || |||||||||||||||||||| |||||||||||||| ||||||| |||||||| Sbjct: 2342 atgaagaagagcagggtccgactacgaacgaaaacaaacgataaaagaa---cgacgtcc 2286 Query: 145 atccttgctatcccaggctgccggcctggaacccatcctagatcga 190 ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2285 atccttgctatcccaggctgccgacctggaacccatcctagatcga 2240 Score = 101 bits (51), Expect = 2e-18 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||| |||||||||||||| | | ||||||||||||||||| |||||| ||||| Sbjct: 865 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 806 Query: 333 gggtcctcaca-tccgacacgcttgcggaactcta 366 || |||||||| ||||||||||||||| ||||||| Sbjct: 805 ggttcctcacattccgacacgcttgcgaaactcta 771
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 105 bits (53), Expect = 1e-19 Identities = 89/100 (89%), Gaps = 7/100 (7%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct: 4230 aagagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatcctt 4177 Query: 151 gctatcccaggctgccggcctggaacccatcctagatcga 190 |||||||||||||||| ||||||||||||||||| ||||| Sbjct: 4176 gctatcccaggctgcc-gcctggaacccatcctatatcga 4138 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 |||||||||||||||||||||||| | | ||||||| |||||| || || ||||||||| Sbjct: 2787 ctgagatcccgcttggaagaagaacgaatccgtgaagaagacgagccaacatagtcgaac 2728 Query: 333 gggtcctcaca 343 | |||||||| Sbjct: 2727 gaatcctcaca 2717 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctaca 52 ||||||||||||| |||||||||||| Sbjct: 4299 ttggcttacactcgccacaagctaca 4274
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 101 bits (51), Expect = 2e-18 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaac 332 ||||||||| |||||||||||||| | | ||||||||||||||||| |||||| ||||| Sbjct: 6094 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 6035 Query: 333 gggtcctcaca-tccgacacgcttgcggaactcta 366 || |||||||| ||||||||||||||| ||||||| Sbjct: 6034 ggttcctcacattccgacacgcttgcgaaactcta 6000
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 79.8 bits (40), Expect = 8e-12 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||||||||||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 79.8 bits (40), Expect = 8e-12 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||||||||| ||||||||||||||| || |||||| ||||||||| Sbjct: 69 aagagcagggtccgactacagacgaaaacaaacgataa------aacgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| |||||||||| |||| Sbjct: 138 ttggcttacactcgccacaagctaaatca 110
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 79.8 bits (40), Expect = 8e-12 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||||||||||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 79.8 bits (40), Expect = 8e-12 Identities = 66/75 (88%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||||||||||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/98 (85%), Gaps = 7/98 (7%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||| ||||||||||||||||||||| |||| ||| |||||||| Sbjct: 4031 aagagcagggtctaactacggacgaaaacaaacgataaaat------gacacccatcctt 3978 Query: 151 gctatcccaggctgccggcctggaacccatcctagatc 188 |||||||||||||||| |||||||||||||||| |||| Sbjct: 3977 gctatcccaggctgcc-gcctggaacccatcctggatc 3941 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 275 gagatcccgcttggaagaagaatgccttcgtgaagcagacgaaccgacgtagtcgaacgg 334 |||||||||||||||||||||| | ||||||| | ||||||| ||||||||||||| Sbjct: 2583 gagatcccgcttggaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacga 2524 Query: 335 gtcctcaca 343 |||||||| Sbjct: 2523 atcctcaca 2515 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctaca 52 ||||||||||||| |||||||||||| Sbjct: 4100 ttggcttacactcgccacaagctaca 4075
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 71.9 bits (36), Expect = 2e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||| |||||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 71.9 bits (36), Expect = 2e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||| |||||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctaca 52 ||||||||||||| |||||||||||| Sbjct: 137 ttggcttacactcgccacaagctaca 112
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 71.9 bits (36), Expect = 2e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||| |||||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctaca 52 ||||||||||||| |||||||||||| Sbjct: 137 ttggcttacactcgccacaagctaca 112
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 71.9 bits (36), Expect = 2e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||||||||||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 71.9 bits (36), Expect = 2e-09 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||||||||||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 18 tataaagagttggcttacactcaccacaagctacatcagagtcacatcagtaca 71 |||| ||| ||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 4419 tatatagaattggcttacactcgtcacaagctacatcagagtcacatcaataca 4366 Score = 63.9 bits (32), Expect = 5e-07 Identities = 80/95 (84%), Gaps = 7/95 (7%) Strand = Plus / Minus Query: 90 taagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcct 149 |||||||||||||||||||||||||||| ||||| | || || ||| |||||||| Sbjct: 4343 taagagcagggtccgactacggacgaaatcaaacaataa------aatgacatccatcct 4290 Query: 150 tgctatcccaggctgccggcctggaacccatccta 184 |||||||| |||||||| |||| ||| |||||||| Sbjct: 4289 tgctatcctaggctgcc-gcctagaatccatccta 4256 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 ctgagatcccgcttggaagaagaa 296 ||||||||||||| |||||||||| Sbjct: 2873 ctgagatcccgctcggaagaagaa 2850
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 63.9 bits (32), Expect = 5e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 ||||||||||||| |||||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccatctacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 63.9 bits (32), Expect = 5e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 91 aagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccatcctt 150 |||||||||||||||||||||||||||| ||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaaaaaatgataa------aatgacatccatcctt 16 Query: 151 gctatcccaggctgc 165 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 27 ttggcttacactcaccacaagctacatca 55 ||||||||||||| ||||||||||||||| Sbjct: 138 ttggcttacactcgccacaagctacatca 110
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 135 aacgacgtccatccttgctatcccaggctgc 165 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 305 tgaagcagacgaaccgacgtagtcgaacgggtcctcaca 343 ||||| |||| ||| ||||||||||||||| |||||||| Sbjct: 194936 tgaagtagacaaacggacgtagtcgaacggatcctcaca 194974
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 305 tgaagcagacgaaccgacgtagtcgaacgggtcctcaca 343 ||||| |||| ||| ||||||| |||||||||||||||| Sbjct: 85834 tgaagaagacaaacggacgtagacgaacgggtcctcaca 85872
>gb|AC090701.5| Homo sapiens chromosome 18, clone RP11-810M21, complete sequence Length = 188779 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 aagaagagatatataaagagtt 28 |||||||||||||||||||||| Sbjct: 139119 aagaagagatatataaagagtt 139140
>gb|AC007631.3|AC007631 Genomic sequence of Homo sapiens clone R145D03A from chromosome 18, complete sequence Length = 146596 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 aagaagagatatataaagagtt 28 |||||||||||||||||||||| Sbjct: 26556 aagaagagatatataaagagtt 26535
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 tccttgctatcccaggctgcc 166 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 agaagagatatataaagagtt 28 ||||||||||||||||||||| Sbjct: 2381230 agaagagatatataaagagtt 2381210 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 agaagagatatataaagagtt 28 ||||||||||||||||||||| Sbjct: 1765411 agaagagatatataaagagtt 1765431
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 tccttgctatcccaggctgcc 166 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aaaacaaacgacaaaagaaga 135 ||||||||||||||||||||| Sbjct: 44586 aaaacaaacgacaaaagaaga 44606
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aaaacaaacgacaaaagaaga 135 ||||||||||||||||||||| Sbjct: 220564 aaaacaaacgacaaaagaaga 220584
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 aaaacaaacgacaaaagaaga 135 ||||||||||||||||||||| Sbjct: 59190 aaaacaaacgacaaaagaaga 59170
>gb|AY835928.1| Codonopsis lanceolata aluminum-induced protein (AIP) mRNA, complete cds Length = 906 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ttggcttacactcaccacaa 46 |||||||||||||||||||| Sbjct: 293 ttggcttacactcaccacaa 312
>emb|AL157780.12| Human DNA sequence from clone RP11-98E22 on chromosome 9q33.1-33.3 Contains a CpG island, complete sequence Length = 160114 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tataaagagttggcttacac 37 |||||||||||||||||||| Sbjct: 43026 tataaagagttggcttacac 43007
>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence Length = 176647 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 aagtaacctttacctgtacc 267 |||||||||||||||||||| Sbjct: 160098 aagtaacctttacctgtacc 160079
>gb|AC012238.7| Homo sapiens, clone RP11-16F4, complete sequence Length = 156834 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 aagtaacctttacctgtacc 267 |||||||||||||||||||| Sbjct: 68652 aagtaacctttacctgtacc 68633 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,193,697 Number of Sequences: 3902068 Number of extensions: 3193697 Number of successful extensions: 62857 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62658 Number of HSP's gapped (non-prelim): 177 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
