ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
2gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 58 3e-05
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
5dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
6dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
9dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
10gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, c... 42 1.7
11gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, co... 42 1.7
12gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete se... 42 1.7
13ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
14ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
15gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosom... 42 1.7
16gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (... 42 1.7
17dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP2... 42 1.7
18dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.7
19emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chr... 42 1.7
20ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT... 40 6.7
21ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 ... 40 6.7
22gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, com... 40 6.7
23gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.7
24ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (493051... 40 6.7
25emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 i... 40 6.7
26gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, co... 40 6.7
27gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 geno... 40 6.7
28gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome... 40 6.7
29gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosom... 40 6.7
30gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 6.7
31emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 o... 40 6.7
32gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.7
33gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 6.7
34gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14... 40 6.7
35dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.7
36gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15... 40 6.7
37gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cD... 40 6.7
38dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.7
39dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.7 
>ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative steroid membrane
           binding protein (OSJNBb0073N24.4), mRNA
          Length = 909

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 387 tccttctcttttacctcctccgagctcacctccctcggctt 427
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 650 tccttttcttttacttcctccgagcttacctccctcggctt 610
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 387   tccttctcttttacctcctccgagctcacctccctcggctt 427
             ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 16513 tccttttcttttacttcctccgagcttacctccctcggctt 16553
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 387      tccttctcttttacctcctccgagctcacctccctcggctt 427
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18655235 tccttttcttttacttcctccgagcttacctccctcggctt 18655275
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>dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F02, full
           insert sequence
          Length = 985

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 387 tccttctcttttacctcctccgagctcacctccctcggctt 427
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 728 tccttttcttttacttcctccgagcttacctccctcggctt 688
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>dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K01, full
            insert sequence
          Length = 2077

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 387  tccttctcttttacctcctccgagctcacctccctcggctt 427
            ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 2040 tccttttcttttacttcctccgagcttacctccctcggctt 2000
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>dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019P08, full
           insert sequence
          Length = 1030

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 387 tccttctcttttacctcctccgagctcacctccctcggctt 427
           ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 773 tccttttcttttacttcctccgagcttacctccctcggctt 733
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 387      tccttctcttttacctcctccgagctcacctccctcggctt 427
                ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 18666088 tccttttcttttacttcctccgagcttacctccctcggctt 18666128
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 271     gtccaagtccaacgtgctggta 292
               ||||||||||||||||||||||
Sbjct: 1683155 gtccaagtccaacgtgctggta 1683176
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>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 271   gtccaagtccaacgtgctggta 292
             ||||||||||||||||||||||
Sbjct: 82655 gtccaagtccaacgtgctggta 82676
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>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence
          Length = 210797

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    tccttctcttttacctcctcc 407
              |||||||||||||||||||||
Sbjct: 111084 tccttctcttttacctcctcc 111064
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>gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, complete sequence
          Length = 207631

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    tccttctcttttacctcctcc 407
              |||||||||||||||||||||
Sbjct: 141735 tccttctcttttacctcctcc 141715
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>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence
          Length = 137979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   caacagacgacttaacaaatg 182
             |||||||||||||||||||||
Sbjct: 42681 caacagacgacttaacaaatg 42701
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>ref|XM_783458.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC583554), partial mRNA
          Length = 1636

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 gatacagatttattgccatga 330
           |||||||||||||||||||||
Sbjct: 605 gatacagatttattgccatga 585
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>ref|XM_789544.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5543-PA
           (LOC589915), mRNA
          Length = 2043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 gatacagatttattgccatga 330
           |||||||||||||||||||||
Sbjct: 599 gatacagatttattgccatga 579
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>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence
          Length = 165496

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    ctgcatcagctgcggcttcct 390
              |||||||||||||||||||||
Sbjct: 149943 ctgcatcagctgcggcttcct 149963
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>gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (DRC2) gene, complete cds
          Length = 25172

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   tccttctcttttacctcctcc 407
             |||||||||||||||||||||
Sbjct: 15677 tccttctcttttacctcctcc 15657
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>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete
             sequence
          Length = 111402

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   ctgcatcagctgcggcttcct 390
             |||||||||||||||||||||
Sbjct: 61511 ctgcatcagctgcggcttcct 61491
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>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
             sequence
          Length = 175731

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 133   cagcagctaaattattcacccaaaa 157
             |||||||||||||||||| ||||||
Sbjct: 84302 cagcagctaaattattcatccaaaa 84278
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>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete
              sequence
          Length = 228196

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 370    ctgcatcagctgcggcttcct 390
              |||||||||||||||||||||
Sbjct: 184045 ctgcatcagctgcggcttcct 184025
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>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA,
           complete cds
          Length = 983

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 cttccttctcttttacctcc 404
           ||||||||||||||||||||
Sbjct: 864 cttccttctcttttacctcc 845
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>ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 mRNA, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 cttccttctcttttacctcc 404
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
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>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence
          Length = 210051

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 373    catcagctgcggcttccttctctt 396
              |||||||||| |||||||||||||
Sbjct: 109167 catcagctgctgcttccttctctt 109190
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>gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section 55 of 121 of the
            complete plasmid sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 415  cctccctcggcttgtgctca 434
            ||||||||||||||||||||
Sbjct: 9576 cctccctcggcttgtgctca 9557
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>ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (4930511J11Rik), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 cctcctccgagctcacctcc 419
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
              complete sequence
          Length = 218171

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    ttccttctcttttacctcct 405
              ||||||||||||||||||||
Sbjct: 174362 ttccttctcttttacctcct 174381
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>gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 cttccttctcttttacctcc 404
           ||||||||||||||||||||
Sbjct: 703 cttccttctcttttacctcc 684
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>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
              sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    cttccttctcttttacctcc 404
              ||||||||||||||||||||
Sbjct: 110987 cttccttctcttttacctcc 110968
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>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence
          Length = 230221

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    cctcctccgagctcacctcc 419
              ||||||||||||||||||||
Sbjct: 168533 cctcctccgagctcacctcc 168552
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>gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosome 13, complete sequence
          Length = 187710

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      acatcacgcacatgaacatc 26
              ||||||||||||||||||||
Sbjct: 130882 acatcacgcacatgaacatc 130901
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>gb|AE004137.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 45
            of 251 of the complete chromosome
          Length = 10291

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  cacccaaaagtatcaacaga 168
            ||||||||||||||||||||
Sbjct: 5985 cacccaaaagtatcaacaga 5966
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>emb|Z99290.1|HS299C21 Human DNA sequence from clone RP1-299C21 on chromosome 6q16, complete
             sequence
          Length = 77183

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   tggctgtttctggggatgtg 488
             ||||||||||||||||||||
Sbjct: 29907 tggctgtttctggggatgtg 29926
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gctgcggcttccttctcttt 397
              ||||||||||||||||||||
Sbjct: 477500 gctgcggcttccttctcttt 477481
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acacgaacatcacgcacatg 20
              ||||||||||||||||||||
Sbjct: 925759 acacgaacatcacgcacatg 925778
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>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   cttccttctcttttacctcc 404
             ||||||||||||||||||||
Sbjct: 26376 cttccttctcttttacctcc 26395
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>dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930511J11 product:hypothetical
           PMP-22/EMP/MP20 and claudin family containing protein,
           full insert sequence
          Length = 1407

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 cctcctccgagctcacctcc 419
           ||||||||||||||||||||
Sbjct: 866 cctcctccgagctcacctcc 885
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>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
             sequence
          Length = 94487

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   cttccttctcttttacctcc 404
             ||||||||||||||||||||
Sbjct: 15387 cttccttctcttttacctcc 15368
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>gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cDNA clone MGC:38714
           IMAGE:5357758), complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 400 cctcctccgagctcacctcc 419
           ||||||||||||||||||||
Sbjct: 838 cctcctccgagctcacctcc 857
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>dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-793A3, complete
              sequence
          Length = 222596

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    tcacctccctcggcttgtgctcag 435
              ||||||||||| ||||||||||||
Sbjct: 176651 tcacctccctcagcttgtgctcag 176674
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>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete
             sequence
          Length = 186978

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 412   tcacctccctcggcttgtgctcag 435
             ||||||||||| ||||||||||||
Sbjct: 18732 tcacctccctcagcttgtgctcag 18755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,589,160
Number of Sequences: 3902068
Number of extensions: 3589160
Number of successful extensions: 59833
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59682
Number of HSP's gapped (non-prelim): 151
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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