ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40f03 |
|---|---|
| Clone Library Name | barley_pub |
>NAGB_SALTI (Q8Z8G0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 32.0 bits (71), Expect = 0.95 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDC 216 +GK H+ ++ + P RP+ LPT L YK+ VE+ KA + Sbjct: 12 VGKWAARHIVNRINAFKPTTDRPFVLGLPTGGTPLTAYKALVEM-----HKAGEVSFKHV 66 Query: 217 ETV-------MQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 T + ++HPE + +F DH P G +APD D Sbjct: 67 VTFNMDEYVGLPKEHPESYH--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_YERPE (Q8ZDE1) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 31.6 bits (70), Expect = 1.2 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQV------ELSFQLVSKADD 198 +GK H+ ++ + P RP+ LPT ++ YK + E+SF+ V + Sbjct: 12 VGKWAARHIVNRINAFKPTAERPFILGLPTGGTPMEAYKYLIAMHKAGEVSFKHVVTFN- 70 Query: 199 KDLSDCETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 D + ++HPE + TF T DH P G A+ DA+ Sbjct: 71 ---MDEYVGLPKEHPESYY--TFMHTNFFDHVDIPAENINLLNGNAADIDAE 117
>NAGB_SALTY (Q8ZQX7) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 31.6 bits (70), Expect = 1.2 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVELSFQLVSKADDKDLSDC 216 +GK H+ ++ + P RP+ LPT L YK+ VE+ KA + Sbjct: 12 VGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPLTAYKALVEM-----HKAGEVSFKHV 66 Query: 217 ETV-------MQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 T + ++HPE + +F DH P G +APD D Sbjct: 67 VTFNMDEYVGLPKEHPESYH--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide| hydrolase) (Epoxide hydratase) Length = 455 Score = 30.4 bits (67), Expect = 2.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 217 ETVMQQQHPEHWRLDTFYFTRPLDHPCF 300 ET ++ H H R+D F FT PL+ CF Sbjct: 54 ETSDEEIHDLHQRIDKFRFTPPLEDSCF 81
>MURG_BORPE (Q7VUQ3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 30.0 bits (66), Expect = 3.6 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWT------QHLPTKQQALKQYKSQVELSFQLVSKAD 195 LG H N + L+L+P +RP QHLP QQA Q Q + + AD Sbjct: 190 LGAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQADCRAFIDDMAD 248
>PEX3_DEBHA (Q6BK00) Peroxisomal biogenesis factor 3 (Peroxin-3)| Length = 420 Score = 30.0 bits (66), Expect = 3.6 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 13/94 (13%) Frame = +1 Query: 16 IQAEINHLGKHVRNHLFTKLLSLIPIDSRPWTQHLPTK--QQALKQYKSQVELSFQLVSK 189 ++ +I +N + +L+L+P+ ++P HLP + QALK K+ + Q +S Sbjct: 53 VKEQIKRRFVQTQNDCYLTILALLPVLTQPIINHLPIELITQALKLKKTNSNPTPQEISD 112 Query: 190 A-----------DDKDLSDCETVMQQQHPEHWRL 258 + + D SD M E W+L Sbjct: 113 SLLTTDNLTMHQNTNDSSDLSHYMSLSKTELWKL 146
>NAGB_SHIFL (P59688) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.6 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLS 210 +GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K Sbjct: 12 VGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNM 71 Query: 211 DCETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 D + ++HPE + +F DH P G +APD D Sbjct: 72 DEYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_ECOLI (P0A759) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.6 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLS 210 +GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K Sbjct: 12 VGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNM 71 Query: 211 DCETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 D + ++HPE + +F DH P G +APD D Sbjct: 72 DEYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>NAGB_ECO57 (P0A760) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 266 Score = 30.0 bits (66), Expect = 3.6 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVEL--SFQLVSKADDKDLS 210 +GK H+ ++ + P RP+ LPT + YK+ VE+ + Q+ K Sbjct: 12 VGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNM 71 Query: 211 DCETVMQQQHPEHWRLDTFYFTRPLDHPCFPEPRKGQACGCASAPDAD 354 D + ++HPE + +F DH P G +APD D Sbjct: 72 DEYVGLPKEHPESYY--SFMHRNFFDHVDIPAENINLLNG--NAPDID 115
>MURG_BORPA (Q7W4B4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWT------QHLPTKQQALKQYKSQVE 165 LG H N + L+L+P +RP QHLP QQA Q Q + Sbjct: 190 LGAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQAD 238
>MURG_BORBR (Q7WFS2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWT------QHLPTKQQALKQYKSQVE 165 LG H N + L+L+P +RP QHLP QQA Q Q + Sbjct: 190 LGAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQAD 238
>NAS14_CAEEL (Q19269) Zinc metalloproteinase nas-14 precursor (EC 3.4.24.21)| (Nematode astacin 14) Length = 503 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 92 STPDPGPNTFQPNNKHLNSTNHKLN*AFSWSPKLTIKISLIAKQ*CNSNTL 244 +TP P P + NK +ST + A S +PK T + K+ C L Sbjct: 424 TTPKPVPRNKEKENKSASSTTRGTSTATSTTPKTTTTTTSAPKEKCEDKNL 474
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/47 (36%), Positives = 18/47 (38%) Frame = -1 Query: 248 CSGCCCCITVSQSERSLSSALETS*KLSSTCDLYCLSACCLVGRCWV 108 CS CCC QS SS + SS C C CC C V Sbjct: 106 CSKPCCC----QSSCCQSSCCKPCCCQSSCCQSSCFKPCCCQSSCCV 148
>ATPE_SHEON (Q8E8C1) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 142 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%) Frame = -1 Query: 461 EVFYDPGELL----------AGLIKGPKEGDEEAALAGKLREAATVSASGAD 336 EVFY G LL A ++ K+ DE+AAL K R A ++ +GAD Sbjct: 62 EVFYLSGGLLEVQPSSVSVLADVVMRAKDIDEQAALEAKRRAEAHMATAGAD 113
>MURG_NITEU (Q82VS3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.3 bits (64), Expect = 6.2 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +1 Query: 37 LGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQ--QALKQYKSQVELSFQLVSKADD--KD 204 LG V N + + LS+IP D RP+ H K AL+Q + ++ LV+ ++ Sbjct: 188 LGAQVLNTVLPQALSMIPEDQRPYVTHQSGKAHLDALQQAYADHGVTGNLVAFIENMAAH 247 Query: 205 LSDCETVM 228 DC+ V+ Sbjct: 248 YQDCDLVI 255
>NAGB_BORBU (O30564) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 268 Score = 29.3 bits (64), Expect = 6.2 Identities = 14/52 (26%), Positives = 23/52 (44%) Frame = +1 Query: 16 IQAEINHLGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVELS 171 I+ + K NH+ K+ P P+ LPT + YK+ +EL+ Sbjct: 5 IRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELN 56
>PROX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 736 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +2 Query: 101 DPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 205 D GPN+F P KHL T +LN A S +K+ Sbjct: 334 DQGPNSFHPEGKHLAETLKQELNTAMSQVVDTVVKV 369
>PROX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +2 Query: 86 SRSTPDPGPNTFQPNNKHLNST-NHKLN*AFSWSPKLTIKI 205 S D GPN+ QP KHL T +LN A S +K+ Sbjct: 330 SNKERDHGPNSLQPEGKHLAETLKQELNTAMSQVVDTVVKV 370
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Frame = +1 Query: 28 INHLGKHVRNHLFTKLLSLIPIDSRPWTQHLPTKQQALKQYKSQVE---LSFQLVSK--- 189 ++ LG+ ++ + S I D +QHL +QAL + ++ ++ L ++ +K Sbjct: 7303 LHELGEQLKQQVDASAASAIQSDQLSLSQHLCALEQALCKQQTSLQAGVLDYETFAKSLE 7362 Query: 190 ADDKDLSDCETVMQQQHPEH 249 A + + + E ++Q Q P H Sbjct: 7363 ALEAWIVEAEEILQGQDPSH 7382
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 28.9 bits (63), Expect = 8.1 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -1 Query: 500 VLKVDEQLRAEDVEVFYDPGELLAGLIKGPKEGDEEAALAGKLREAATVSASG 342 V VDE + E E FY+ G LA + P AA+ SASG Sbjct: 190 VFHVDEDTKVEKAEFFYERGNFLASFLTAP---------------AASASASG 227
>GLMU_SYNPX (Q7U7I0) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 450 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 199 KDLSDCETVMQQQHPEHWRLDTFYFTRP 282 K L+ CE V+QQ+ +HW + F P Sbjct: 227 KQLAQCEAVLQQRLRDHWMAEGVTFVDP 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,628,755 Number of Sequences: 219361 Number of extensions: 1218524 Number of successful extensions: 4537 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4524 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
