Clone Name | rbart40f03 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191889.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 801 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 656 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 597 Query: 475 cgcagctgctcgtccaccttgag 497 ||||||||||| ||||||||||| Sbjct: 596 cgcagctgctcatccaccttgag 574 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 773 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 714 Query: 373 agc 375 ||| Sbjct: 713 agc 711
>dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D12, full insert sequence Length = 1128 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 722 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 663 Query: 475 cgcagctgctcgtccaccttgag 497 ||||||||||| ||||||||||| Sbjct: 662 cgcagctgctcatccaccttgag 640 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 839 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 780 Query: 373 agc 375 ||| Sbjct: 779 agc 777
>dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D09, full insert sequence Length = 1086 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658 Query: 475 cgcagctgctcgtccaccttgag 497 ||||||||||| ||||||||||| Sbjct: 657 cgcagctgctcatccaccttgag 635 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775 Query: 373 agc 375 ||| Sbjct: 774 agc 772
>dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E01, full insert sequence Length = 1086 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 717 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 658 Query: 475 cgcagctgctcgtccaccttgag 497 ||||||||||| ||||||||||| Sbjct: 657 cgcagctgctcatccaccttgag 635 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 834 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 775 Query: 373 agc 375 ||| Sbjct: 774 agc 772
>ref|NM_191890.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 99.6 bits (50), Expect = 8e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 436 agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccaccttg 495 ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 629 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccaccttg 570 Query: 496 ag 497 || Sbjct: 569 ag 568
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 5e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 30505945 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 30506004 Query: 475 cgcagctgctcgtccacct 493 ||||||||||| ||||||| Sbjct: 30506005 cgcagctgctcatccacct 30506023 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 436 agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 493 ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 30514024 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 30514081 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 30505828 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 30505887 Query: 373 agc 375 ||| Sbjct: 30505888 agc 30505890
>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435H01 Length = 160141 Score = 93.7 bits (47), Expect = 5e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 415 cccttgataagccccgcgaggagctcccctgggtcgtagaacacctccacgtcctccgcc 474 ||||||| ||| ||| | || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 134208 cccttgagaaggccccccagtagctcgcctgggtcgtagtacacctccacgtcctccgcc 134267 Query: 475 cgcagctgctcgtccacct 493 ||||||||||| ||||||| Sbjct: 134268 cgcagctgctcatccacct 134286 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 436 agctcccctgggtcgtagaacacctccacgtcctccgcccgcagctgctcgtccacct 493 ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 142287 agctcgcctgggtcgtagtacacctccacgtcctccgcccgcagctgctcatccacct 142344 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 313 aaggggcaggcctgcggctgcgcgtcggcacctgatgccgacaccgtagccgcctcgcgg 372 |||||||||||||||| ||||| | | || ||||| |||||||| |||||||||||| | Sbjct: 134091 aaggggcaggcctgcgactgcggggccgcgcctgacgccgacacgatagccgcctcgccg 134150 Query: 373 agc 375 ||| Sbjct: 134151 agc 134153
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 387 cgccgcctcctcgtccccctcct 409 ||||||||||||||||||||||| Sbjct: 18372886 cgccgcctcctcgtccccctcct 18372864
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 387 cgccgcctcctcgtccccctcct 409 ||||||||||||||||||||||| Sbjct: 87622 cgccgcctcctcgtccccctcct 87600
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 387 cgccgcctcctcgtccccctcct 409 ||||||||||||||||||||||| Sbjct: 34760 cgccgcctcctcgtccccctcct 34738
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 379 ccggcgagcgccgcctcctcgtc 401 ||||||||||||||||||||||| Sbjct: 5614784 ccggcgagcgccgcctcctcgtc 5614762
>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence Length = 181572 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 gtcctccgcccgcagctgctc 485 ||||||||||||||||||||| Sbjct: 18113 gtcctccgcccgcagctgctc 18133
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 ggcctgcggctgcgcgtcggc 341 ||||||||||||||||||||| Sbjct: 2919771 ggcctgcggctgcgcgtcggc 2919791
>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15, complete sequence Length = 126156 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cttcccggcgagcgccgcctc 395 ||||||||||||||||||||| Sbjct: 80201 cttcccggcgagcgccgcctc 80221
>gb|AC131107.3| Mus musculus BAC clone RP23-339P15 from chromosome 8, complete sequence Length = 214894 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 tcaattcaggcagaaatcaat 33 ||||||||||||||||||||| Sbjct: 12774 tcaattcaggcagaaatcaat 12794
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 ggcctgcggctgcgcgtcggc 341 ||||||||||||||||||||| Sbjct: 3961642 ggcctgcggctgcgcgtcggc 3961662
>ref|XM_976988.1| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA Length = 1068 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 gtcctccgcccgcagctgctc 485 ||||||||||||||||||||| Sbjct: 685 gtcctccgcccgcagctgctc 665
>ref|XM_919420.2| PREDICTED: Mus musculus hypothetical LOC631657 (LOC631657), mRNA Length = 1068 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 gtcctccgcccgcagctgctc 485 ||||||||||||||||||||| Sbjct: 685 gtcctccgcccgcagctgctc 665
>gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome 7, complete sequence Length = 211478 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 agctttcagctggtctccaaa 189 ||||||||||||||||||||| Sbjct: 144356 agctttcagctggtctccaaa 144336
>gb|AC107707.10| Mus musculus chromosome 1, clone RP24-268C13, complete sequence Length = 178000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 gtcctccgcccgcagctgctc 485 ||||||||||||||||||||| Sbjct: 148558 gtcctccgcccgcagctgctc 148578
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cttcccggcgagcgccgcctc 395 ||||||||||||||||||||| Sbjct: 14045 cttcccggcgagcgccgcctc 14065
>emb|X70708.1|TTLYSS T.thermophilus gene for lysyl-tRNA synthetase Length = 1738 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 gcctcctcgtccccctccttg 411 ||||||||||||||||||||| Sbjct: 1424 gcctcctcgtccccctccttg 1404
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 ggcctgcggctgcgcgtcggc 341 ||||||||||||||||||||| Sbjct: 3703544 ggcctgcggctgcgcgtcggc 3703564
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cttcccggcgagcgccgcctc 395 ||||||||||||||||||||| Sbjct: 6230767 cttcccggcgagcgccgcctc 6230787
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gcctcctcgtccccctccttg 411 ||||||||||||||||||||| Sbjct: 988093 gcctcctcgtccccctccttg 988113 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ccgcctcctcgtccccctcct 409 ||||||||||||||||||||| Sbjct: 630372 ccgcctcctcgtccccctcct 630352
>dbj|AK069168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P16, full insert sequence Length = 776 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cttcccggcgagcgccgcctc 395 ||||||||||||||||||||| Sbjct: 76 cttcccggcgagcgccgcctc 96
>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence Length = 209834 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 gtcctccgcccgcagctgctc 485 ||||||||||||||||||||| Sbjct: 57923 gtcctccgcccgcagctgctc 57943
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 cttcccggcgagcgccgcctc 395 ||||||||||||||||||||| Sbjct: 6297234 cttcccggcgagcgccgcctc 6297254
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gcctcctcgtccccctccttg 411 ||||||||||||||||||||| Sbjct: 663093 gcctcctcgtccccctccttg 663113 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ccgcctcctcgtccccctcct 409 ||||||||||||||||||||| Sbjct: 292533 ccgcctcctcgtccccctcct 292513
>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence Length = 201556 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tcaattcaggcagaaatcaat 33 ||||||||||||||||||||| Sbjct: 63135 tcaattcaggcagaaatcaat 63115
>gb|AC016368.3| Drosophila melanogaster clone BACR36A03, complete sequence Length = 165876 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 agaaatcaatcatttggggaagca 47 |||||||||||| ||||||||||| Sbjct: 504 agaaatcaatcagttggggaagca 527
>gb|AC008257.6| Drosophila melanogaster clone BACR08A11, complete sequence Length = 170478 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 agaaatcaatcatttggggaagca 47 |||||||||||| ||||||||||| Sbjct: 98660 agaaatcaatcagttggggaagca 98683
>ref|XM_361692.1| Magnaporthe grisea 70-15 hypothetical protein (MG04166.4) partial mRNA Length = 1341 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 ccgcagctgctcgtccaccttgag 497 |||||||||||||| ||||||||| Sbjct: 1104 ccgcagctgctcgtacaccttgag 1081
>gb|AC151324.2| Xenopus tropicalis clone ISB-266M19, complete sequence Length = 72079 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 53669 attcaggcagaaatcaatca 53688
>ref|NM_024709.2| Homo sapiens chromosome 1 open reading frame 115 (C1orf115), mRNA Length = 3007 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 181 gccgcctcctcgtccccctc 162
>ref|XM_802327.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel (Tc00.1047053507213.30) partial mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ctccgcccgcagctgctcgt 487 |||||||||||||||||||| Sbjct: 234 ctccgcccgcagctgctcgt 215
>ref|XM_810399.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel (Tc00.1047053511301.140) partial mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ctccgcccgcagctgctcgt 487 |||||||||||||||||||| Sbjct: 234 ctccgcccgcagctgctcgt 215
>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the 3' end of a histone deacetylase 1 (HDAC1) pseudogene, the 3' end of the MARK1 gene for MAP/microtubule affinity-regulating kinase, a novel gene, a novel gene (FLJ14146) and a CpG island, complete sequence Length = 121601 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 66445 gccgcctcctcgtccccctc 66426
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agttgaactgagctttcagc 178 |||||||||||||||||||| Sbjct: 1652648 agttgaactgagctttcagc 1652629
>emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA Length = 4093 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 ccgcagctgctcgtccacct 493 |||||||||||||||||||| Sbjct: 811 ccgcagctgctcgtccacct 792
>emb|CR858045.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2215 (from clone DKFZp469E2215) Length = 4716 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cgactcccgaccctggaccc 112 |||||||||||||||||||| Sbjct: 30 cgactcccgaccctggaccc 11
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 cggcgagcgccgcctcctcg 399 |||||||||||||||||||| Sbjct: 241074 cggcgagcgccgcctcctcg 241055
>gb|BC036067.1| Homo sapiens chromosome 1 open reading frame 115, mRNA (cDNA clone MGC:33695 IMAGE:5274863), complete cds Length = 3007 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 181 gccgcctcctcgtccccctc 162
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 aacactggagactcgacacg 264 |||||||||||||||||||| Sbjct: 123557 aacactggagactcgacacg 123576
>emb|CR749538.1| Homo sapiens genomic DNA; cDNA DKFZp686M22246 (from clone DKFZp686M22246) Length = 4481 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 3329 attcaggcagaaatcaatca 3348
>gb|AC114668.12| Mus musculus chromosome 3, clone RP24-176P19, complete sequence Length = 183890 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 172179 attcaggcagaaatcaatca 172198
>dbj|AK125403.1| Homo sapiens cDNA FLJ43414 fis, clone OCBBF2024781 Length = 3410 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 656 gccgcctcctcgtccccctc 637
>dbj|AK091937.1| Homo sapiens cDNA FLJ34618 fis, clone KIDNE2014415 Length = 2900 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 149 gccgcctcctcgtccccctc 130
>dbj|AK056749.1| Homo sapiens cDNA FLJ32187 fis, clone PLACE6002016 Length = 2832 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 135 gccgcctcctcgtccccctc 116
>dbj|AK024208.1| Homo sapiens cDNA FLJ14146 fis, clone MAMMA1002947 Length = 2887 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 136 gccgcctcctcgtccccctc 117
>dbj|AB169850.1| Macaca fascicularis brain cDNA, clone: QtrA-13193, similar to human fatty acid 2-hydroxylase (FA2H), mRNA, RefSeq: NM_024306.2 Length = 2453 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 taaacagtacaaatcacaag 160 |||||||||||||||||||| Sbjct: 2329 taaacagtacaaatcacaag 2310
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ccgcagctgctcgtccacct 493 |||||||||||||||||||| Sbjct: 58678 ccgcagctgctcgtccacct 58697
>dbj|AK037608.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130029H20 product:unclassifiable, full insert sequence Length = 2258 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 587 attcaggcagaaatcaatca 606
>gb|AC092539.5| Homo sapiens BAC clone RP11-124A17 from 4, complete sequence Length = 27022 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 23296 attcaggcagaaatcaatca 23277
>gb|AC025162.48| Homo sapiens 12 BAC RP11-973D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67199 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gaaacaattcaattcaggca 24 |||||||||||||||||||| Sbjct: 10160 gaaacaattcaattcaggca 10179
>gb|BC009627.1| Homo sapiens within bgcn homolog (Drosophila), mRNA (cDNA clone IMAGE:3897762), partial cds Length = 901 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gaaacaattcaattcaggca 24 |||||||||||||||||||| Sbjct: 650 gaaacaattcaattcaggca 631
>ref|XM_311349.2| Anopheles gambiae str. PEST ENSANGP00000001678 (ENSANGG00000001397), partial mRNA Length = 7146 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 cctccgcccgcagctgctcg 486 |||||||||||||||||||| Sbjct: 2899 cctccgcccgcagctgctcg 2880
>emb|AJ336503.1|HSA336503 Homo sapiens genomic sequence surrounding NotI site, clone NR1-MA13R Length = 934 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 4 gccgcctcctcgtccccctc 23
>emb|AJ336100.1|HSA336100 Homo sapiens genomic sequence surrounding NotI site, clone NR3-BD17RS Length = 679 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 4 gccgcctcctcgtccccctc 23
>emb|AJ329421.1|HSA329421 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DJ18R Length = 703 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 4 gccgcctcctcgtccccctc 23
>emb|AJ331233.1|HSA331233 Homo sapiens genomic sequence surrounding NotI site, clone NL3-CK20R Length = 776 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gccgcctcctcgtccccctc 407 |||||||||||||||||||| Sbjct: 4 gccgcctcctcgtccccctc 23
>gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, complete sequence Length = 176948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 162484 attcaggcagaaatcaatca 162465
>gb|AY108934.1| Zea mays PCO145446 mRNA sequence Length = 867 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gcgccgcctcctcgtccccctcct 409 |||||||||||||||| ||||||| Sbjct: 106 gcgccgcctcctcgtcgccctcct 129
>gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 of 73 of the complete sequence Length = 305162 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 agaaatcaatcatttggggaagca 47 |||||||||||| ||||||||||| Sbjct: 275273 agaaatcaatcagttggggaagca 275296
>gb|AC151318.2| Xenopus tropicalis clone ISB-241L4, complete sequence Length = 71260 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 attcaggcagaaatcaatca 35 |||||||||||||||||||| Sbjct: 47240 attcaggcagaaatcaatca 47221
>emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26, UL26.5, and UL44-gC genes Length = 4523 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ccgcagctgctcgtccacct 493 |||||||||||||||||||| Sbjct: 3275 ccgcagctgctcgtccacct 3294
>gb|DQ267826.1| Nocardia sp. C-14-1 catechol, 2-dioxygenase and phenol hydroxylase gene clusters, partial sequence Length = 5299 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 tccgcccgcagctgctcgtccacc 492 |||||||||||||||||| ||||| Sbjct: 3694 tccgcccgcagctgctcgaccacc 3717
>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete sequence Length = 227073 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaccaaacaacaagcactta 142 |||||||||||||||||||| Sbjct: 161085 aaccaaacaacaagcactta 161104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,913,078 Number of Sequences: 3902068 Number of extensions: 3913078 Number of successful extensions: 86321 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85523 Number of HSP's gapped (non-prelim): 798 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)