ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40f01 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 33.1 bits (74), Expect = 0.40 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 8/121 (6%) Frame = +3 Query: 57 SSTPKATISPKAIHTMSPRAIQTINILCSYSTVCVS-----L*SSDAGATTELQAHISYS 221 ++TP AT S KA + SPR T+ +L S +T + + SS G T Q Sbjct: 3001 ATTPTAT-SSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLGTTGTSQ------ 3053 Query: 222 NLPAHKT---SKLQQPPIPQDKQSNTYPLTQXXXXXXXXXXXXVMPTPASFWCLMNPPSA 392 N P H S + P+ ++T T+ TP + W L +A Sbjct: 3054 NRPPHPMATMSTIHPSSTPETTHTSTVLTTKATTTRATSSMSTPSSTPGTTWILTELTTA 3113 Query: 393 A 395 A Sbjct: 3114 A 3114
>GT4_ARATH (Q9M9U0) Putative glycosyltransferase 4 (EC 2.4.-.-) (AtGT4)| Length = 513 Score = 31.6 bits (70), Expect = 1.2 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +3 Query: 54 LSSTPKATISPKAIHTMSPRAIQTINILCSYSTVCVSL*SSD--AGATTELQAHISYSNL 227 L+ PKA +SP A +T+ PR + + + +ST V L +D AT L I+ Sbjct: 99 LAEPPKADVSPNATYTLEPRIAEIPSDV--HSTDLVELPKADISPNATYTLGPRIAEIPS 156 Query: 228 PAHKTSKLQQPPIPQDKQSNTYPL 299 +H T L +PP + TY L Sbjct: 157 DSHLTD-LLEPPKADISPNATYTL 179
>L2GL1_HUMAN (Q15334) Lethal(2) giant larvae protein homolog 1 (LLGL) (Human| homolog to the D-lgl gene) (Hugl-1) (DLG4) Length = 1062 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPW 309 W+GH+RL PR G PW Sbjct: 569 WKGHERLSPRTGPLPW 584
>OXR1_GIBZE (Q4I8S2) Oxidation resistance protein 1| Length = 326 Score = 30.8 bits (68), Expect = 2.0 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = +2 Query: 194 RASGTHKLQQPPSPQDKQV----TATSHPTRQAKQHIPTHSEPRATAPVEAV 337 RAS L PPS + T + P ++ + PTHS P + P EAV Sbjct: 201 RASNITPLPPPPSADTTNLNSRNTTLAPPPPSSEANTPTHSRPASPTPSEAV 252
>P2OX_PHLGI (Q6UG02) Pyranose 2-oxidase precursor (EC 1.1.3.10) (P2Ox)| (Pyranose oxidase) (PROD) (POD) (POx) (Pyranose:oxygen 2-oxidoreductase) (Glucose 2-oxidase) (FAD-oxidoreductase) Length = 622 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Frame = +2 Query: 2 HITPQCFTFTMTVLATLSLEYTEGDDL---TKGDPHY---VTKGDPNYKH 133 HIT Q F TV++T + D GDP Y T G PN KH Sbjct: 356 HITEQTLVFCQTVMSTELINSVTADMTIVGKPGDPDYSVTYTSGSPNNKH 405
>L2GL1_RAT (Q8K4K5) Lethal(2) giant larvae protein homolog 1 (LLGL) (Rgl-1)| Length = 1036 Score = 29.3 bits (64), Expect = 5.7 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPW 309 W+GH+RL P G PW Sbjct: 567 WKGHERLSPHTGPLPW 582
>L2GL1_MOUSE (Q80Y17) Lethal(2) giant larvae protein homolog 1 (LLGL) (Mlgl)| (Mgl-1) Length = 1036 Score = 29.3 bits (64), Expect = 5.7 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPW 309 W+GH+RL P G PW Sbjct: 567 WKGHERLNPHTGLLPW 582
>L2GL1_BOVIN (Q8MKF0) Lethal(2) giant larvae protein homolog 1 (LLGL) (Bgl-1)| (Giant larvae-1) Length = 1036 Score = 29.3 bits (64), Expect = 5.7 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPW 309 W+GH+RL P G PW Sbjct: 567 WKGHERLNPHTGLLPW 582
>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)| Length = 1174 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 216 YSNLPAHKTSKLQQPPIPQDKQSNTYPLTQ 305 Y+N+P++ S Q P+P ++YPL Q Sbjct: 759 YANIPSYPPSHQQPAPVPSYPTKSSYPLPQ 788
>P2OX_TRAHI (P59097) Pyranose 2-oxidase precursor (EC 1.1.3.10) (P2Ox)| (Pyranose oxidase) (PROD) (POD) (POx) (Pyranose:oxygen 2-oxidoreductase) (Glucose 2-oxidase) (FAD-oxidoreductase) Length = 622 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Frame = +2 Query: 2 HITPQCFTFTMTVLATLSLEYTEGDDLTKGDPHY------VTKGDPNYKH 133 HIT Q F TV++T + D G P + T G+PN KH Sbjct: 356 HITEQTLVFCQTVMSTELINSVTADMTIVGKPGHPDYSVTYTPGNPNNKH 405
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/63 (25%), Positives = 28/63 (44%) Frame = +2 Query: 98 HYVTKGDPNYKHIVQLQYRLRVTLIIRCRCNNRASGTHKLQQPPSPQDKQVTATSHPTRQ 277 +Y+TK + NYK +V+ YR R + QQ Q +Q+ +S ++ Sbjct: 470 YYLTKKNENYKSLVRRSYR------------RRGKSQQQQQQQQQQQQQQMARSSQEEKE 517 Query: 278 AKQ 286 K+ Sbjct: 518 EKE 520
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/72 (23%), Positives = 31/72 (43%) Frame = +2 Query: 194 RASGTHKLQQPPSPQDKQVTATSHPTRQAKQHIPTHSEPRATAPVEAVVGHAHASLVLVF 373 + SG H + S +D V ++ H + T + +T+ EAV + Sbjct: 407 KKSGYHTADKDDSSEDLSVPSSPHTEAIQHSSVSTSNGVSSTSKAEAVATSVLTQMADQS 466 Query: 374 DEPAVGRLRVAP 409 EPA+ ++ +AP Sbjct: 467 TEPALSQIVMAP 478
>IGHD_RAT (P01883) Ig delta chain C region (Fragment)| Length = 202 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +2 Query: 173 IRCRCNNRASGTHKLQQPPSPQDKQVTATSHPTRQAKQHIPTHSEPRAT 319 + C N + K + P ++ Q + ++PT QAK H ++P AT Sbjct: 21 LTCTITNTSKKKSKTFKLPETRNSQSSKKANPTPQAKNHYIEATKPTAT 69
>IRA2_YEAST (P19158) Inhibitory regulator protein IRA2| Length = 3079 Score = 28.9 bits (63), Expect = 7.5 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +1 Query: 166 SDHQMQVQQQSFR--HT*VTATSQPTRQASYSNLPSHKTSKATHT 294 S HQ +QQQS R H+ T SQ + S S S T +THT Sbjct: 433 SHHQSYIQQQSERKLHSSWTTNSQSSTSLSSSTSNSTTTDFSTHT 477
>E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A)| Length = 873 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1 Query: 166 SDHQMQVQQQSFRHT*VTATSQPTRQASYSNLPSHKTSKATHTHSLRA 309 S HQ Q QQQ H Q +Q S S L + + + +TH H L + Sbjct: 639 SHHQQQQQQQQLHHQQQQQQQQQQQQHSQSQLAAAQLA-STHPHQLHS 685
>KCNN3_MOUSE (P58391) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 731 Score = 26.2 bits (56), Expect(2) = 9.1 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = +2 Query: 221 QPPSPQDKQVTATSHPTRQAKQHIPTHSEPR 313 QPP PQ +Q Q +Q P H P+ Sbjct: 57 QPPQPQQQQSQQQQQQQSQQQQQAPLHPLPQ 87 Score = 20.8 bits (42), Expect(2) = 9.1 Identities = 7/20 (35%), Positives = 10/20 (50%) Frame = +2 Query: 176 RCRCNNRASGTHKLQQPPSP 235 +C C + + QQPP P Sbjct: 20 KCPCPSSGDEQQQQQQPPPP 39
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/72 (23%), Positives = 31/72 (43%) Frame = +2 Query: 194 RASGTHKLQQPPSPQDKQVTATSHPTRQAKQHIPTHSEPRATAPVEAVVGHAHASLVLVF 373 + SG H + S +D V ++ H + T + +T+ EAV + Sbjct: 407 KKSGYHTADKDDSSEDISVPSSPHTEAIQHSSVSTSNGVSSTSKAEAVATSVLTQMADQS 466 Query: 374 DEPAVGRLRVAP 409 EPA+ ++ +AP Sbjct: 467 TEPALSQIVMAP 478
>IF2_BORBR (Q7WHG2) Translation initiation factor IF-2| Length = 997 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +2 Query: 221 QPPSPQDKQVTATSHPTRQAKQHIPTHSEPR-ATAPVEAVVGHAHASLVLVFDEPAVGRL 397 +P S Q Q A PT A+ EP+ AP +AV + + E + Sbjct: 162 EPQSEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQA 221 Query: 398 RVAPVVH 418 R PVVH Sbjct: 222 RPEPVVH 228
>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)| (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20) (Deubiquitinating enzyme 20) Length = 913 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 221 QPPSPQDKQVTATSHPTRQAKQHIPTHSEPRATAPVEAVVGHAHASLVLVFDEPAVGRLR 400 QPPSP+ T P A H+ + S P +PV GHA S P +R Sbjct: 364 QPPSPRSSSPCRTPEPDNDA--HLRSSSRP--CSPVHHHEGHAKLS----SSPPRASPVR 415 Query: 401 VAP 409 +AP Sbjct: 416 MAP 418
>POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPWALSEWVCVA 282 W G D P G W A+ +WVC A Sbjct: 1963 WIGEDYSTPCDGTWLRAIWDWVCTA 1987
>POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 356 WRGHDRLRPRQGQWPWALSEWVCVA 282 W G D P G W A+ +WVC A Sbjct: 1963 WIGEDYSTPCDGTWLRAIWDWVCTA 1987
>FIBR_VIPLE (P83255) Fibrolase (EC 3.4.24.72) (VlF) (Fibrinolytic proteinase)| (Non-hemorrhagic fibrinolytic metalloproteinase) Length = 202 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 356 SLVLVFDEPAVGRLRVAPVVHQGGHQVDERHGGGCC 463 S+ +V D A+ R+ A + H+ GH + H G C Sbjct: 122 SVGIVKDHSAINRMVAATMAHEIGHNLGMNHDGSQC 157
>DIS1_SCHPO (Q09933) Phosphoprotein p93| Length = 882 Score = 28.5 bits (62), Expect = 9.7 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +2 Query: 242 KQVTATSHPTRQAKQHIPTHSEPRATAPVEAVV 340 K +T +HP + ++ +P + P T+PV+ V Sbjct: 530 KDITVNAHPNQPSRPRLPRVASPLKTSPVKLAV 562
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.5 bits (62), Expect = 9.7 Identities = 22/68 (32%), Positives = 31/68 (45%) Frame = +2 Query: 206 THKLQQPPSPQDKQVTATSHPTRQAKQHIPTHSEPRATAPVEAVVGHAHASLVLVFDEPA 385 TH +QQPP PQ +Q HP + P ++P + V+ H H+ D + Sbjct: 1006 TH-IQQPPPPQGQQ---PPHPPPGQQPPPPQPAKP------QQVIQHHHSPRHHKSDPYS 1055 Query: 386 VGRLRVAP 409 G LR AP Sbjct: 1056 TGHLREAP 1063
>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)| Length = 285 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +2 Query: 194 RASGTHKLQQPPSPQDKQVTATSHPTRQAKQHIPT-HSEPRATAPVEAVVGHAHASLVLV 370 R + + +Q P+P +HP+ + +P H P T P A G A A +L+ Sbjct: 92 RGASPGRPEQSPAPG-------AHPSPAPQPPVPLGHCAPGPTTPAVATGGSAPACPLLL 144 Query: 371 FDEPAVGRLRVAPVVH 418 D+ G PVV+ Sbjct: 145 ADQGPAGPKGKEPVVY 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,740,244 Number of Sequences: 219361 Number of extensions: 1230745 Number of successful extensions: 3971 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3769 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3968 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
