ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481095.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4dbj|AK068711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
5dbj|AP003128.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 48 0.027
6gb|AF534906.1| Human adenovirus type 1 subgroup C, complete genome 44 0.42
7gb|J01917.1|ADRCG Adenovirus type 2, complete genome 44 0.42
8emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) recept... 44 0.42
9gb|M23919.1|RABALP1A Rabbit dihydropyridine-sensitive calcium ch... 44 0.42
10ref|NM_127361.2| Arabidopsis thaliana HIS1-3 (HISTONE H1-3); DNA... 42 1.7
11ref|NM_207522.1| Mus musculus cDNA sequence BC067068 (BC067068),... 42 1.7
12gb|BC067068.1| Mus musculus cDNA sequence BC067068, mRNA (cDNA c... 42 1.7
13gb|AY045797.1| Arabidopsis thaliana putative histone H1 protein ... 42 1.7
14gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 ma... 42 1.7
15dbj|AK148535.1| Mus musculus adult pancreas islet cells cDNA, RI... 42 1.7
16dbj|AK144620.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 42 1.7
17gb|BC013721.1| Mus musculus coiled-coil domain containing 59, mR... 42 1.7
18dbj|AK047009.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 1.7
19dbj|AK036330.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 1.7
20dbj|AK009028.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 1.7
21gb|AY084603.1| Arabidopsis thaliana clone 112970 mRNA, complete ... 42 1.7
22dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 1.7
23gb|U72241.1|ATU72241 Arabidopsis thaliana histone H1-3 (His1-3) ... 42 1.7
24gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, compl... 42 1.7
25dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.7
26gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
27gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.5
28emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261... 40 6.5
29emb|AJ310198.1|SMO310198 Sorghum mosaic virus genomic RNA for po... 40 6.5
30emb|AJ310197.1|SMO310197 Sorghum mosaic virus genomic RNA for po... 40 6.5
31dbj|AP006336.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.5
32gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, comp... 40 6.5
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
34gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosom... 40 6.5
35gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, co... 40 6.5
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
37dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.5
38gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10,... 40 6.5 
>ref|XM_481095.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1042

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 126/159 (79%)
 Strand = Plus / Minus

                                                                       
Query: 325 tgtcgaggccgtagtcggtcatgcccacgccagcctcgttctggtgtttgatgaacccgc 384
           |||| |||||||| || ||||||| || |||| | ||||||||||| ||||||||||| |
Sbjct: 685 tgtcaaggccgtaatccgtcatgctcatgccaacttcgttctggtgcttgatgaacccac 626

                                                                       
Query: 385 cgtcggccgccttcgagtagctccagtagtacaccagggaggccaccaggttgatgagcg 444
           |    || ||  ||||||| |||||||||||||  || || ||||  || || || ||| 
Sbjct: 625 ctgttgcagctctcgagtaactccagtagtacatgagagatgccaggagatttataagca 566

                                                  
Query: 445 tcatggcggcggctgctgcaaacacccccttgcggagcg 483
           ||| ||| || ||||||||||| || |||||||| ||||
Sbjct: 565 tcaaggcagcagctgctgcaaagactcccttgcgaagcg 527
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 126/159 (79%)
 Strand = Plus / Plus

                                                                           
Query: 325     tgtcgaggccgtagtcggtcatgcccacgccagcctcgttctggtgtttgatgaacccgc 384
               |||| |||||||| || ||||||| || |||| | ||||||||||| ||||||||||| |
Sbjct: 9825020 tgtcaaggccgtaatccgtcatgctcatgccaacttcgttctggtgcttgatgaacccac 9825079

                                                                           
Query: 385     cgtcggccgccttcgagtagctccagtagtacaccagggaggccaccaggttgatgagcg 444
               |    || ||  ||||||| |||||||||||||  || || ||||  || || || ||| 
Sbjct: 9825080 ctgttgcagctctcgagtaactccagtagtacatgagagatgccaggagatttataagca 9825139

                                                      
Query: 445     tcatggcggcggctgctgcaaacacccccttgcggagcg 483
               ||| ||| || ||||||||||| || |||||||| ||||
Sbjct: 9825140 tcaaggcagcagctgctgcaaagactcccttgcgaagcg 9825178
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>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1063H10
          Length = 170453

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 126/159 (79%)
 Strand = Plus / Plus

                                                                         
Query: 325   tgtcgaggccgtagtcggtcatgcccacgccagcctcgttctggtgtttgatgaacccgc 384
             |||| |||||||| || ||||||| || |||| | ||||||||||| ||||||||||| |
Sbjct: 88952 tgtcaaggccgtaatccgtcatgctcatgccaacttcgttctggtgcttgatgaacccac 89011

                                                                         
Query: 385   cgtcggccgccttcgagtagctccagtagtacaccagggaggccaccaggttgatgagcg 444
             |    || ||  ||||||| |||||||||||||  || || ||||  || || || ||| 
Sbjct: 89012 ctgttgcagctctcgagtaactccagtagtacatgagagatgccaggagatttataagca 89071

                                                    
Query: 445   tcatggcggcggctgctgcaaacacccccttgcggagcg 483
             ||| ||| || ||||||||||| || |||||||| ||||
Sbjct: 89072 tcaaggcagcagctgctgcaaagactcccttgcgaagcg 89110
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>dbj|AK068711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160C06, full
           insert sequence
          Length = 1042

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 126/159 (79%)
 Strand = Plus / Minus

                                                                       
Query: 325 tgtcgaggccgtagtcggtcatgcccacgccagcctcgttctggtgtttgatgaacccgc 384
           |||| |||||||| || ||||||| || |||| | ||||||||||| ||||||||||| |
Sbjct: 685 tgtcaaggccgtaatccgtcatgctcatgccaacttcgttctggtgcttgatgaacccac 626

                                                                       
Query: 385 cgtcggccgccttcgagtagctccagtagtacaccagggaggccaccaggttgatgagcg 444
           |    || ||  ||||||| |||||||||||||  || || ||||  || || || ||| 
Sbjct: 625 ctgttgcagctctcgagtaactccagtagtacatgagagatgccaggagatttataagca 566

                                                  
Query: 445 tcatggcggcggctgctgcaaacacccccttgcggagcg 483
           ||| ||| || ||||||||||| || |||||||| ||||
Sbjct: 565 tcaaggcagcagctgctgcaaagactcccttgcgaagcg 527
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>dbj|AP003128.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-90K17, complete
             sequence
          Length = 59000

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 215   ttacagcaacctcccagcccacaa 238
             ||||||||||||||||||||||||
Sbjct: 14971 ttacagcaacctcccagcccacaa 14948



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 249   ttacagcaacctcccatcccacaa 272
             |||||||||||||||| |||||||
Sbjct: 14971 ttacagcaacctcccagcccacaa 14948
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>gb|AF534906.1| Human adenovirus type 1 subgroup C, complete genome
          Length = 36001

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 445  tcatggcggcggctgctgcaaa 466
            ||||||||||||||||||||||
Sbjct: 3624 tcatggcggcggctgctgcaaa 3603
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>gb|J01917.1|ADRCG Adenovirus type 2, complete genome
          Length = 35937

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 445  tcatggcggcggctgctgcaaa 466
            ||||||||||||||||||||||
Sbjct: 3603 tcatggcggcggctgctgcaaa 3582
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>emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) receptor (from skeletal muscle)
          Length = 6083

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 419  cagggaggccaccaggttgatgagcg 444
            ||||||||||||||||||| ||||||
Sbjct: 1881 cagggaggccaccaggttgctgagcg 1856
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>gb|M23919.1|RABALP1A Rabbit dihydropyridine-sensitive calcium channel alpha-1 subunit
            mRNA, complete cds
          Length = 6080

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 419  cagggaggccaccaggttgatgagcg 444
            ||||||||||||||||||| ||||||
Sbjct: 1881 cagggaggccaccaggttgctgagcg 1856
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>ref|NM_127361.2| Arabidopsis thaliana HIS1-3 (HISTONE H1-3); DNA binding AT2G18050
           (HIS1-3) transcript variant AT2G18050.1 mRNA, complete
           cds
          Length = 763

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 269 acaagacaagcaaagcaacac 289
           |||||||||||||||||||||
Sbjct: 9   acaagacaagcaaagcaacac 29
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>ref|NM_207522.1| Mus musculus cDNA sequence BC067068 (BC067068), mRNA
          Length = 1969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 35  gatgagcgtcatggcggcggc 55
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>gb|BC067068.1| Mus musculus cDNA sequence BC067068, mRNA (cDNA clone MGC:91371
           IMAGE:30606425), complete cds
          Length = 1969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 35  gatgagcgtcatggcggcggc 55
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>gb|AY045797.1| Arabidopsis thaliana putative histone H1 protein (At2g18050) mRNA,
           complete cds
          Length = 779

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 269 acaagacaagcaaagcaacac 289
           |||||||||||||||||||||
Sbjct: 5   acaagacaagcaaagcaacac 25
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>gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete
             sequence
          Length = 88149

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   acaagacaagcaaagcaacac 289
             |||||||||||||||||||||
Sbjct: 29831 acaagacaagcaaagcaacac 29811
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>dbj|AK148535.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
           enriched library, clone:C820019H10
           product:unclassifiable, full insert sequence
          Length = 2147

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 62  gatgagcgtcatggcggcggc 82
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>dbj|AK144620.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730011G09 product:hypothetical protein,
           full insert sequence
          Length = 1962

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 53  gatgagcgtcatggcggcggc 73
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>gb|BC013721.1| Mus musculus coiled-coil domain containing 59, mRNA (cDNA clone
           IMAGE:3983611), with apparent retained intron
          Length = 897

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 225 gatgagcgtcatggcggcggc 205
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>dbj|AK047009.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930010N23 product:weakly
           similar to BR22 TTF-1 ASSOCIATED PROTEIN [Homo sapiens],
           full insert sequence
          Length = 2453

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 247 gatgagcgtcatggcggcggc 227
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>dbj|AK036330.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630058I18 product:weakly
           similar to BR22 TTF-1 ASSOCIATED PROTEIN [Homo sapiens],
           full insert sequence
          Length = 3837

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 260 gatgagcgtcatggcggcggc 240
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>dbj|AK009028.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2300004H16 product:weakly similar to BR22
           TTF-1 ASSOCIATED PROTEIN [Homo sapiens], full insert
           sequence
          Length = 873

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 437 gatgagcgtcatggcggcggc 457
           |||||||||||||||||||||
Sbjct: 209 gatgagcgtcatggcggcggc 189
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>gb|AY084603.1| Arabidopsis thaliana clone 112970 mRNA, complete sequence
          Length = 746

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 269 acaagacaagcaaagcaacac 289
           |||||||||||||||||||||
Sbjct: 9   acaagacaagcaaagcaacac 29
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>dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21, complete
             sequence
          Length = 118300

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   acacatacccactcactcaga 306
             |||||||||||||||||||||
Sbjct: 55733 acacatacccactcactcaga 55713
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>gb|U72241.1|ATU72241 Arabidopsis thaliana histone H1-3 (His1-3) gene, complete cds
          Length = 3453

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 269  acaagacaagcaaagcaacac 289
            |||||||||||||||||||||
Sbjct: 1564 acaagacaagcaaagcaacac 1584
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>gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, complete sequence
          Length = 197822

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 437   gatgagcgtcatggcggcggc 457
             |||||||||||||||||||||
Sbjct: 11737 gatgagcgtcatggcggcggc 11717
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>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete
              sequences
          Length = 230157

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 286    acacatacccactcactcaga 306
              |||||||||||||||||||||
Sbjct: 183322 acacatacccactcactcaga 183302
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>gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0044M15, complete sequence
          Length = 144568

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   ccgccgtcggccgccttcga 400
             ||||||||||||||||||||
Sbjct: 54794 ccgccgtcggccgccttcga 54813
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 321    cccctgtcgaggccgtagtcggtc 344
              ||||||||||||||| ||||||||
Sbjct: 648427 cccctgtcgaggccgaagtcggtc 648450
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>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete
              sequence
          Length = 184223

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ctcagagcccagggccactg 320
              ||||||||||||||||||||
Sbjct: 141675 ctcagagcccagggccactg 141694
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>emb|AJ310198.1|SMO310198 Sorghum mosaic virus genomic RNA for polyprotein
          Length = 9627

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 agacaagcaaagcaacacat 291
           ||||||||||||||||||||
Sbjct: 63  agacaagcaaagcaacacat 82
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>emb|AJ310197.1|SMO310197 Sorghum mosaic virus genomic RNA for polyprotein
          Length = 9624

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 agacaagcaaagcaacacat 291
           ||||||||||||||||||||
Sbjct: 63  agacaagcaaagcaacacat 82
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>dbj|AP006336.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT07E09, TM0293,
             complete sequence
          Length = 113091

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   gtcatggcggcggctgctgc 463
             ||||||||||||||||||||
Sbjct: 78104 gtcatggcggcggctgctgc 78085
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>gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, complete sequence
          Length = 149387

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ctggtgtttgatgaacccgc 384
              ||||||||||||||||||||
Sbjct: 111716 ctggtgtttgatgaacccgc 111697
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 381      ccgccgtcggccgccttcga 400
                ||||||||||||||||||||
Sbjct: 10762677 ccgccgtcggccgccttcga 10762658
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>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete
             sequence
          Length = 203726

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   aagcaaagcaacacataccc 295
             ||||||||||||||||||||
Sbjct: 97675 aagcaaagcaacacataccc 97694
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>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence
          Length = 189975

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  ctggtgtttgatgaacccgc 384
            ||||||||||||||||||||
Sbjct: 1620 ctggtgtttgatgaacccgc 1601
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 381      ccgccgtcggccgccttcga 400
                ||||||||||||||||||||
Sbjct: 10841866 ccgccgtcggccgccttcga 10841847
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>dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L01, TM1658,
             complete sequence
          Length = 99089

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   gtcatggcggcggctgctgc 463
             ||||||||||||||||||||
Sbjct: 66114 gtcatggcggcggctgctgc 66133
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>gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10, complete sequence
          Length = 107205

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    caatgttttacttttaccat 33
             ||||||||||||||||||||
Sbjct: 46867 caatgttttacttttaccat 46848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,936,530
Number of Sequences: 3902068
Number of extensions: 3936530
Number of successful extensions: 81376
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81190
Number of HSP's gapped (non-prelim): 182
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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