ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPL1_ARATH (Q9LZT4) Expansin-like 1 precursor (AtEXPL1) (At-EXP... 82 6e-16
2EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXP... 80 4e-15
3EXPL3_ARATH (Q9LZT5) Expansin-like 3 precursor (AtEXPL3) (At-EXP... 70 3e-12
4Y1966_DEIRA (Q9RT03) UPF0124 protein DR1966 30 3.5
5PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1... 30 4.5
6MKC1_CANAL (P43068) Mitogen-activated protein kinase MKC1 (EC 2.... 29 7.7
7GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon sub... 29 7.7
8KPRS_VIBVY (Q7MMZ1) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 7.7
9KPRS_VIBVU (Q8DFF5) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 7.7
10KPRS_VIBPA (Q87RN8) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 7.7
11KPRS_VIBCH (Q9KQ22) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 7.7

>EXPL1_ARATH (Q9LZT4) Expansin-like 1 precursor (AtEXPL1) (At-EXPL1)|
           (Ath-ExpBeta-2.1)
          Length = 265

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 35/50 (70%), Positives = 40/50 (80%)
 Frame = -2

Query: 486 VVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337
           VVTGGYDGK +W+ + VLP  W AG++YD GVQITDIAQEGC PCD H W
Sbjct: 216 VVTGGYDGKMIWS-QSVLPSNWEAGKIYDAGVQITDIAQEGCDPCDAHIW 264



to top

>EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXPL2)|
           (Ath-ExpBeta-2.2)
          Length = 265

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 36/50 (72%), Positives = 38/50 (76%)
 Frame = -2

Query: 486 VVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337
           VVT GYDGK VW+ R VLP  W AG+ YD GVQITDIAQEGC PCD H W
Sbjct: 216 VVTAGYDGKMVWSQR-VLPANWEAGKSYDAGVQITDIAQEGCDPCDDHIW 264



to top

>EXPL3_ARATH (Q9LZT5) Expansin-like 3 precursor (AtEXPL3) (At-EXPL3)|
           (Ath-ExpBeta-2.3)
          Length = 263

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 33/49 (67%), Positives = 36/49 (73%)
 Frame = -2

Query: 483 VTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFPCDTHEW 337
           VTGGYDGK VW+ R VLP  W +G +YD GVQITDIAQEGC  C  H W
Sbjct: 216 VTGGYDGKTVWSKR-VLPANWNSGRIYDAGVQITDIAQEGCDTCG-HIW 262



to top

>Y1966_DEIRA (Q9RT03) UPF0124 protein DR1966|
          Length = 253

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 283 GSMLAIVCLFTIPDLLSPPLVGV--AREAALLRDIGDLDPRVVDLA---GAPPSRQHLAV 447
           G +LAI      P LL+ P  GV  A  A     +G +  R V+     GA P R H AV
Sbjct: 96  GVLLAIGTADCYPLLLADPEAGVIGAAHAGWKGTVGRIGQRTVEQMVNLGARPERIHAAV 155

Query: 448 GP 453
           GP
Sbjct: 156 GP 157



to top

>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC|
           2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase)
           (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide
           kinase)
          Length = 801

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 465 GKWVWADREVLPRRWRAGEVYDTGV 391
           GK+ WAD  V   RW++G++  +GV
Sbjct: 146 GKYTWADGNVYIGRWKSGKMNGSGV 170



to top

>MKC1_CANAL (P43068) Mitogen-activated protein kinase MKC1 (EC 2.7.11.24) (MAP|
           kinase MKC1)
          Length = 501

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 277 FFGSMLAIVCLFTIPDLLSPPLVGVAREAALLRDIGDLDPRVVDLAGAPPSRQH 438
           FF     I CL+ + D++  P+ G   E  L  ++ + D   +  +G P S QH
Sbjct: 98  FFRGHKNITCLYDL-DIIPNPMTGEFNEIYLYEELMECDMHQIIRSGQPLSDQH 150



to top

>GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon subunit precursor|
           (GABA(A) receptor)
          Length = 506

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 317 IVNKQTIANMEPKKMLLLAPRFGRATHARTKDRSTA---PHQTGEVISLVSHE 168
           ++  QT A+  PK   L  PR     HART+ RS A    HQ   V  +V+ E
Sbjct: 364 LIYNQTKAHASPK---LRHPRINSRAHARTRARSRACARQHQEAFVCQIVTTE 413



to top

>KPRS_VIBVY (Q7MMZ1) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 314

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408
           P ++SP L GV R  A  + +GD+D  +VD
Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193



to top

>KPRS_VIBVU (Q8DFF5) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 314

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408
           P ++SP L GV R  A  + +GD+D  +VD
Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193



to top

>KPRS_VIBPA (Q87RN8) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 314

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408
           P ++SP L GV R  A  + +GD+D  +VD
Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193



to top

>KPRS_VIBCH (Q9KQ22) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 314

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 408
           P ++SP L GV R  A  + +GD+D  +VD
Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,461,457
Number of Sequences: 219361
Number of extensions: 1443748
Number of successful extensions: 4693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4686
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top