ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40e07 |
|---|---|
| Clone Library Name | barley_pub |
>PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 246 Score = 132 bits (332), Expect = 5e-31 Identities = 55/72 (76%), Positives = 69/72 (95%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 310 IGGQISFDVFP+GWDKTYCL+YLE+F EIHFFGDKTY+GGND+EI+ES +T+GH+VTSP+ Sbjct: 175 IGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKTIGHSVTSPD 234 Query: 309 DTVQQCKSIFLS 274 DTV +CK++F+S Sbjct: 235 DTVAKCKALFMS 246
>PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 257 Score = 113 bits (282), Expect = 3e-25 Identities = 50/72 (69%), Positives = 61/72 (84%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQISFDVFP GWDKTYCL+++E+ F IHFFGDKTYKGGND+EIF RT+GH+VT+ Sbjct: 184 IGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDPRTIGHSVTN 243 Query: 315 PNDTVQQCKSIF 280 P+DT+ + K IF Sbjct: 244 PDDTIAELKKIF 255
>PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 108 bits (269), Expect = 1e-23 Identities = 49/72 (68%), Positives = 60/72 (83%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQISFDVFP GWDKTYCL+++E+ FKEIHFFGDKT GGND+EIF +RT+GH+V S Sbjct: 181 IGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDERTIGHSVQS 240 Query: 315 PNDTVQQCKSIF 280 P+DTV+ +F Sbjct: 241 PDDTVKILTELF 252
>PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 252 Score = 106 bits (265), Expect = 3e-23 Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQISFDVFP GWDKTYCL+++E+ F+ IHFFGDK+YKGGND+EI+ RT+GH V S Sbjct: 178 IGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPRTIGHAVNS 237 Query: 315 PNDTVQQCKSIF 280 P+DT++ F Sbjct: 238 PDDTIRILNETF 249
>PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 242 Score = 105 bits (262), Expect = 6e-23 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQIS DVFP+GWDK YCLR+LE +K I+FFGDKT GGNDHEIF RTVG+TVT+ Sbjct: 170 IGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTA 229 Query: 315 PNDTVQQCKSIF 280 P DT + C+ +F Sbjct: 230 PEDTRRICEGLF 241
>PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 104 bits (259), Expect = 1e-22 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF RTVG++VT+ Sbjct: 174 IGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYSVTA 233 Query: 315 PNDTVQQCKSIF 280 P DT + C+ +F Sbjct: 234 PEDTRRICEELF 245
>PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 102 bits (254), Expect = 5e-22 Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 2/72 (2%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 316 IGGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF RT+G++VT+ Sbjct: 174 IGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTA 233 Query: 315 PNDTVQQCKSIF 280 P DT + C+ +F Sbjct: 234 PEDTRRICELLF 245
>PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (PMMH-22)| Length = 262 Score = 102 bits (253), Expect = 7e-22 Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 2/74 (2%) Frame = -1 Query: 486 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 313 GG ISFDVFP+GWDK YCL L++ F IHFFG++T GGND EIF RTVGH+V SP Sbjct: 184 GGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSP 243 Query: 312 NDTVQQCKSIFLSE 271 DTVQ+C+ IF E Sbjct: 244 QDTVQRCREIFFPE 257
>PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 245 Score = 101 bits (251), Expect = 1e-21 Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYL-EEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 313 IGGQIS DVFP GWDKT+CL+YL +F IHFFGDKT GGNDHEIF +RTVGHTV P Sbjct: 171 IGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERTVGHTVEGP 230 Query: 312 NDTVQQCKSI 283 DT + +++ Sbjct: 231 EDTRKHVENV 240
>PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1)| Length = 262 Score = 100 bits (249), Expect = 2e-21 Identities = 46/74 (62%), Positives = 55/74 (74%), Gaps = 2/74 (2%) Frame = -1 Query: 486 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 313 GG ISFDVFP+GWDK YCL L+E F IHFFG++T GGND EI+ RTVGH+V SP Sbjct: 184 GGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSP 243 Query: 312 NDTVQQCKSIFLSE 271 DTVQ+C+ +F E Sbjct: 244 QDTVQRCRELFFPE 257
>PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 100 bits (249), Expect = 2e-21 Identities = 45/65 (69%), Positives = 52/65 (80%), Gaps = 3/65 (4%) Frame = -1 Query: 489 IGGQISFDVFPQGWDKTYCLRYLE---EFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVT 319 IGGQISFDVFP GWDKTYCLR++E +FKEIHFFGDKT GGND+EI+ RT+ H V Sbjct: 180 IGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVY 239 Query: 318 SPNDT 304 +P DT Sbjct: 240 TPKDT 244
>PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8)| Length = 246 Score = 73.2 bits (178), Expect = 4e-13 Identities = 32/68 (47%), Positives = 43/68 (63%) Frame = -1 Query: 486 GGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPND 307 GGQIS DV+P+ W K+ L ++ + IHFFGD T +GGND EI+ +GHTVT D Sbjct: 175 GGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIYNHPDVIGHTVTGYKD 234 Query: 306 TVQQCKSI 283 V Q + + Sbjct: 235 LVNQLEEL 242
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 29.3 bits (64), Expect = 5.9 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = -1 Query: 444 KTYCLRYLEEFKEIHFFGD 388 K Y LRYLE+++++H FG+ Sbjct: 90 KQYYLRYLEKYEKVHHFGE 108
>LOXE3_HUMAN (Q9BYJ1) Epidermis-type lipoxygenase 3 (EC 1.13.11.-) (e-LOX-3)| Length = 711 Score = 28.9 bits (63), Expect = 7.7 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -2 Query: 152 WEWFIAIVVVNRTILVYIHSQTTDFVCTHL 63 W+W +A V + + +H T F+CTHL Sbjct: 386 WDWLLAKTWVRNSEFL-VHENNTHFLCTHL 414
>YGCL_ECOLI (Q46901) Hypothetical protein ygcL| Length = 502 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 21/81 (25%) Frame = -1 Query: 249 FVHPAPLERSPFWNN---SSVDLPLNSVHLLRS-----------SPLGVVYCYCCCKQN- 115 F + + E P W S+ +P +S+ +R P+G+ C CC +++ Sbjct: 199 FPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESN 258 Query: 114 --YTGI----HTFTNNGFCMH 70 YTG TFT NG H Sbjct: 259 LRYTGFLKEKFTFTVNGLWPH 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,579,350 Number of Sequences: 219361 Number of extensions: 1793350 Number of successful extensions: 4746 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4736 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
