Clone Name | rbart40e06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC163283.3| Mus musculus BAC clone RP23-405A16 from chromosome 12, complete sequence Length = 197540 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 acaaaaatatcttttgcttca 92 ||||||||||||||||||||| Sbjct: 44635 acaaaaatatcttttgcttca 44655
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aatcacaacaaaaatatcttt 85 ||||||||||||||||||||| Sbjct: 117841 aatcacaacaaaaatatcttt 117821
>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a novel gene (MOR280-1) similar to the olfactory receptor family, a novel gene (D330012D11Rik), the Zfp62 gene for zinc finger protein 62, the Mgat1 gene for mannoside acetylglucosaminyltransferase 1, a novel gene (MOR256-24) similar to the olfactory receptor family, a novel gene (MOR256-25) similar to the olfactory receptor family, a novel gene (LOC216715) similar to the olfactory receptor MOR256 family, a novel gene (MOR256-27) similar to the olfactory receptor family, a novel gene (MOR256-2) similar to the olfactory receptor family and three CpG islands, complete sequence Length = 203286 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 atcacaacaaaaatatctttt 86 ||||||||||||||||||||| Sbjct: 160811 atcacaacaaaaatatctttt 160831
>gb|AC008623.4| Homo sapiens chromosome 19 clone CTB-14D10, complete sequence Length = 128266 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 acaaatgatcagagctactcc 228 ||||||||||||||||||||| Sbjct: 69956 acaaatgatcagagctactcc 69936
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aatcacaacaaaaatatcttt 85 ||||||||||||||||||||| Sbjct: 14003961 aatcacaacaaaaatatcttt 14003941
>dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15 Length = 86139 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ttcaatcacaacaaaaatatc 82 ||||||||||||||||||||| Sbjct: 9270 ttcaatcacaacaaaaatatc 9290
>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence Length = 201139 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tctaaacttcaatcacaacaaaaa 78 ||||||||||||| |||||||||| Sbjct: 122920 tctaaacttcaataacaacaaaaa 122897
>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 156129 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 caatcacaacaaaaatatcttttg 87 ||||||||| |||||||||||||| Sbjct: 89580 caatcacaagaaaaatatcttttg 89557
>emb|AL512745.1|HSM802887 Homo sapiens genomic DNA; cDNA DKFZp547C014 (from clone DKFZp547C014) Length = 3280 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 caatcacaacaaaaatatcttttg 87 ||||||||| |||||||||||||| Sbjct: 2004 caatcacaagaaaaatatcttttg 1981
>emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in linkage group 16, complete sequence Length = 250962 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cttcaatcacaacaaaaata 80 |||||||||||||||||||| Sbjct: 108288 cttcaatcacaacaaaaata 108269
>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence Length = 211094 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ctaaacttcaatcacaacaaaaat 79 ||||| |||||||||||||||||| Sbjct: 197161 ctaaatttcaatcacaacaaaaat 197184
>emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on chromosome 2, complete sequence Length = 192345 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 tctaaacttcaatcacaacaaaaa 78 ||||||||||||| |||||||||| Sbjct: 97215 tctaaacttcaataacaacaaaaa 97238
>emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, complete sequence Length = 149603 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cttcaatcacaacaaaaata 80 |||||||||||||||||||| Sbjct: 39255 cttcaatcacaacaaaaata 39274
>gb|M74113.1|RYERKIN1 Secale cereale RKIN1 mRNA, complete CDS Length = 1809 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 atcacaacaaaaatatcttt 85 |||||||||||||||||||| Sbjct: 390 atcacaacaaaaatatcttt 371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,541,863 Number of Sequences: 3902068 Number of extensions: 2541863 Number of successful extensions: 50996 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50965 Number of HSP's gapped (non-prelim): 31 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)