ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC163283.3| Mus musculus BAC clone RP23-405A16 from chromosom... 42 0.88
2emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 42 0.88
3emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chr... 42 0.88
4gb|AC008623.4| Homo sapiens chromosome 19 clone CTB-14D10, compl... 42 0.88
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
6dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 0.88
7gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, comp... 40 3.5
8emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chr... 40 3.5
9emb|AL512745.1|HSM802887 Homo sapiens genomic DNA; cDNA DKFZp547... 40 3.5
10emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in ... 40 3.5
11emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, co... 40 3.5
12emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on ch... 40 3.5
13emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, c... 40 3.5
14gb|M74113.1|RYERKIN1 Secale cereale RKIN1 mRNA, complete CDS 40 3.5

>gb|AC163283.3| Mus musculus BAC clone RP23-405A16 from chromosome 12, complete
             sequence
          Length = 197540

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    acaaaaatatcttttgcttca 92
             |||||||||||||||||||||
Sbjct: 44635 acaaaaatatcttttgcttca 44655



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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
              complete sequence
          Length = 174430

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     aatcacaacaaaaatatcttt 85
              |||||||||||||||||||||
Sbjct: 117841 aatcacaacaaaaatatcttt 117821



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>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a
              novel gene (MOR280-1) similar to the olfactory receptor
              family, a novel gene (D330012D11Rik), the Zfp62 gene for
              zinc finger protein 62, the Mgat1 gene for mannoside
              acetylglucosaminyltransferase 1, a novel gene (MOR256-24)
              similar to the olfactory receptor family, a novel gene
              (MOR256-25) similar to the olfactory receptor family, a
              novel gene (LOC216715) similar to the olfactory receptor
              MOR256 family, a novel gene (MOR256-27) similar to the
              olfactory receptor family, a novel gene (MOR256-2) similar
              to the olfactory receptor family and three CpG islands,
              complete sequence
          Length = 203286

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     atcacaacaaaaatatctttt 86
              |||||||||||||||||||||
Sbjct: 160811 atcacaacaaaaatatctttt 160831



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>gb|AC008623.4| Homo sapiens chromosome 19 clone CTB-14D10, complete sequence
          Length = 128266

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   acaaatgatcagagctactcc 228
             |||||||||||||||||||||
Sbjct: 69956 acaaatgatcagagctactcc 69936



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 65       aatcacaacaaaaatatcttt 85
                |||||||||||||||||||||
Sbjct: 14003961 aatcacaacaaaaatatcttt 14003941



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>dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15
          Length = 86139

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 62   ttcaatcacaacaaaaatatc 82
            |||||||||||||||||||||
Sbjct: 9270 ttcaatcacaacaaaaatatc 9290



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>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     tctaaacttcaatcacaacaaaaa 78
              ||||||||||||| ||||||||||
Sbjct: 122920 tctaaacttcaataacaacaaaaa 122897



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>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part
             of the BAI3 gene for brain-specific angiogenesis inhibitor
             3, complete sequence
          Length = 156129

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    caatcacaacaaaaatatcttttg 87
             ||||||||| ||||||||||||||
Sbjct: 89580 caatcacaagaaaaatatcttttg 89557



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>emb|AL512745.1|HSM802887 Homo sapiens genomic DNA; cDNA DKFZp547C014 (from clone DKFZp547C014)
          Length = 3280

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 64   caatcacaacaaaaatatcttttg 87
            ||||||||| ||||||||||||||
Sbjct: 2004 caatcacaagaaaaatatcttttg 1981



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>emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in linkage group 16, complete
              sequence
          Length = 250962

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     cttcaatcacaacaaaaata 80
              ||||||||||||||||||||
Sbjct: 108288 cttcaatcacaacaaaaata 108269



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>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence
          Length = 211094

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     ctaaacttcaatcacaacaaaaat 79
              ||||| ||||||||||||||||||
Sbjct: 197161 ctaaatttcaatcacaacaaaaat 197184



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>emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on chromosome 2, complete
             sequence
          Length = 192345

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    tctaaacttcaatcacaacaaaaa 78
             ||||||||||||| ||||||||||
Sbjct: 97215 tctaaacttcaataacaacaaaaa 97238



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>emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, complete sequence
          Length = 149603

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    cttcaatcacaacaaaaata 80
             ||||||||||||||||||||
Sbjct: 39255 cttcaatcacaacaaaaata 39274



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>gb|M74113.1|RYERKIN1 Secale cereale RKIN1 mRNA, complete CDS
          Length = 1809

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  atcacaacaaaaatatcttt 85
           ||||||||||||||||||||
Sbjct: 390 atcacaacaaaaatatcttt 371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,541,863
Number of Sequences: 3902068
Number of extensions: 2541863
Number of successful extensions: 50996
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50965
Number of HSP's gapped (non-prelim): 31
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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