>RPOA_GRATL (Q6B8X4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 375 SHSDTPRVGRIWFVGAAMVVTG 440
           SHSDTP++GRI   G A++ TG
Sbjct: 89  SHSDTPQIGRIRLQGPAIITTG 110

>PACA_HUMAN (P18509) Pituitary adenylate cyclase-activating polypeptide|
           precursor (PACAP) [Contains: PACAP-related peptide
           (PRP-48); Pituitary adenylate cyclase-activating
           polypeptide 27 (PACAP-27) (PACAP27); Pituitary adenylate
           cyclase-activating polypep
          Length = 176

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 291 PGIRPEEEVYAVXXXXYLPPVAATQ--GGGSHSDTPRVGRIWF 413
           PGIRPEEE Y       LP    ++  G GS +  PR    W+
Sbjct: 34  PGIRPEEEAYG-EDGNPLPDFDGSEPPGAGSPASAPRAAAAWY 75

>NTNG2_HUMAN (Q96CW9) Netrin G2 precursor (Laminet-2)|
          Length = 530

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = -1

Query: 251 SCLH*RATGPHACNCSLLY------KIESTST*QKGRFTEASSVHCRCLDTEMLECLDGK 90
           SC H    G H  +C L Y      +++  +   +    +  SVH RC +T   EC +G 
Sbjct: 375 SCKH-NTRGQHCQHCRLGYYRNGSAELDDENVCIECNCNQIGSVHDRCNETGFCECREGA 433

Query: 89  SAIKI--WIAVHYFR 51
           +  K    +  HY+R
Sbjct: 434 AGPKCDDCLPTHYWR 448

>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 PPP*RTTGGSAPVTTIAAPTNQIRPT 395
           PPP  ++ G+ P TT AAP   I PT
Sbjct: 604 PPPAASSPGAQPPTTTAAPPTPIEPT 629

>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 PPP*RTTGGSAPVTTIAAPTNQIRPT 395
           PPP  ++ G+ P TT AAP   I PT
Sbjct: 604 PPPAASSPGAQPPTTTAAPPTPIEPT 629

>REP1_ZYGRO (P13778) Trans-acting factor B (REP1)|
          Length = 410

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 97  MENQPSKYGLQFTILGCLSCGWKIQIYSAVHC 2
           M+ + ++  L   + GCL   WK  IY  V C
Sbjct: 309 MQTKDTRARLYLDLKGCLGSSWKFSIYRGVRC 340

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 PPP*RTTGGSAPVTTIAAPTNQIRPT 395
           PPP  ++ G+ P TT AAP   I PT
Sbjct: 604 PPPVASSLGAQPPTTTAAPPTPIEPT 629

>NTNG2_MOUSE (Q8R4F1) Netrin G2 precursor (Laminet-2)|
          Length = 589

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 251 SCLH*RATGPHACNCSLLY------KIESTST*QKGRFTEASSVHCRCLDTEMLECLDGK 90
           SC H    G H  +C L Y      +++  +   +    +  SVH RC +T   EC +G 
Sbjct: 435 SCKH-NTRGQHCQHCRLGYYRNGSAELDDENVCIECNCNQIGSVHDRCNETGFCECREGA 493

Query: 89  SAIKI--WIAVHYFR 51
              K    +  HY+R
Sbjct: 494 VGPKCDDCLPTHYWR 508

>TID_DROVI (Q24331) Protein tumorous imaginal discs, mitochondrial precursor|
           (Protein lethal(2)tumorous imaginal discs) (TID58)
          Length = 529

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 GTRASRCPSTCSAPTKLL*TYPFVMCSLIRSCRGESNYMR 220
           GT+  RC        + + T PFVM S  R C+G   Y++
Sbjct: 254 GTKPGRCQYCNGTGFETISTGPFVMRSTCRYCQGTRQYIK 293

>RNP4_AERPE (Q9YD20) Ribonuclease P protein component 4 (EC 3.1.26.5) (RNase|
          P component 4)
          Length = 103

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 82 SKYGLQFTILGCLSCGW 32
          S+ G+ +T++ CLSCGW
Sbjct: 25 SQGGMSYTVVTCLSCGW 41

>MTCU_HELPO (P55947) Copper-metallothionein (Cu-MT)|
          Length = 64

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 142 RCTAGAWTPRCSSA*MENQPSKYGLQFTILGCLSCG 35
           +C AG    RCSS    N   K G Q T  G   CG
Sbjct: 23  KCGAGCNCDRCSSCHCSNDDCKCGSQCTGSGSCKCG 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,585,141
Number of Sequences: 219361
Number of extensions: 1645735
Number of successful extensions: 3912
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)