ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185403.2| Oryza sativa (japonica cultivar-group), mRNA 214 2e-52
2dbj|AB110165.1| Oryza sativa (japonica cultivar-group) mRNA for ... 214 2e-52
3gb|AF458088.1|AF458088 Oryza sativa methylthioadenosine/S-adenos... 214 2e-52
4dbj|AK104797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
5dbj|AK104481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
6dbj|AK066172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
8dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 149 1e-32
9gb|AY106448.1| Zea mays PCO149605 mRNA sequence 141 3e-30
10ref|NM_119650.2| Arabidopsis thaliana catalytic AT4G34840 mRNA, ... 58 3e-05
11gb|BT012099.1| Arabidopsis thaliana At4g34840 mRNA sequence 58 3e-05
12gb|BT010195.1| Arabidopsis thaliana At4g34840 gene, complete cds 58 3e-05
13gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, com... 40 7.1
14gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, co... 40 7.1
15gb|AC175696.2| Otolemur garnetti, clone XX-8122D2, complete sequ... 40 7.1
16emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 40 7.1
17gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, comp... 40 7.1
18emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete s... 40 7.1
19emb|AL627085.13| Mouse DNA sequence from clone RP23-374N19 on ch... 40 7.1
20dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.1
21dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.1 
>ref|NM_185403.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1070

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 755 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 696

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 695 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 636

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 635 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 588
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>dbj|AB110165.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 12FPG037
          Length = 1103

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 719 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 660

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 659 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 600

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 599 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 552
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>gb|AF458088.1|AF458088 Oryza sativa methylthioadenosine/S-adenosyl homocysteine
           nucleosidase mRNA, complete cds
          Length = 1227

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 755 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 696

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 695 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 636

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 635 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 588
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>dbj|AK104797.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H06, full
           insert sequence
          Length = 1070

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 755 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 696

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 695 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 636

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 635 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 588
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>dbj|AK104481.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G11, full
           insert sequence
          Length = 1121

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 755 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 696

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 695 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 636

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 635 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 588
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>dbj|AK066172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056A05, full
           insert sequence
          Length = 1140

 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Minus

                                                                       
Query: 354 caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
           |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 777 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 718

                                                                       
Query: 414 tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccctc 473
           ||| |||||||| || |||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct: 717 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccctc 658

                                                           
Query: 474 catatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
           |||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 657 catatccttgactgtagcatcattgttcaatattgctgactcgtcatg 610
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Minus

                                                                          
Query: 354    caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
              |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 694293 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 694234

                                                                         
Query: 414    tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccct 472
              ||| |||||||| || |||||||| |||| |||||||||||| |||||||| |||||||
Sbjct: 694233 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccct 694175



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 470    cctccatatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
              |||||||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 693793 cctccatatccttgactgtagcatcattgttcaatattgctgactcgtcatg 693742
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Minus

                                                                          
Query: 354    caggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcacagc 413
              |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 100721 caggttctgcagaaactcctcggctgttggtttctccccatcaacaatatcagtcacagc 100662

                                                                         
Query: 414    tttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccct 472
              ||| |||||||| || |||||||| |||| |||||||||||| |||||||| |||||||
Sbjct: 100661 tttcacaaagattgccggtgttgaaaacatgtcagcaacatatgccaccgcggctccct 100603



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 470    cctccatatccttgactgtagcttcattgctcagtattgctgactcatcatg 521
              |||||||||||||||||||||| |||||| ||| |||||||||||| |||||
Sbjct: 100221 cctccatatccttgactgtagcatcattgttcaatattgctgactcgtcatg 100170
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>gb|AY106448.1| Zea mays PCO149605 mRNA sequence
          Length = 796

 Score =  141 bits (71), Expect = 3e-30
 Identities = 134/155 (86%)
 Strand = Plus / Minus

                                                                       
Query: 352 atcaggttttgcagaaactcctcggctgttggcttctccccatcaacaatgtcggtcaca 411
           |||||||| |||||||||||||| | |||||||||||||||||| || || || ||||| 
Sbjct: 446 atcaggttctgcagaaactcctcagatgttggcttctccccatccacgatatcagtcacg 387

                                                                       
Query: 412 gctttgacaaagatagcgggtgttgagaacaagtcagcaacataagccaccgctgctccc 471
           ||||| |||||||| || || ||||| |||| ||| || ||||| ||||| || ||||||
Sbjct: 386 gctttcacaaagatcgctggcgttgaaaacatgtcggcgacatatgccacagcagctccc 327

                                              
Query: 472 tccatatccttgactgtagcttcattgctcagtat 506
           ||||||||||| |||||||| ||||||||||||||
Sbjct: 326 tccatatcctttactgtagcatcattgctcagtat 292
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>ref|NM_119650.2| Arabidopsis thaliana catalytic AT4G34840 mRNA, complete cds
          Length = 1062

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 445 tcagcaacataagccaccgctgctccctccatatccttgactgtagcttcatt 497
           ||||| ||||| ||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 614 tcagccacataggccactgctgctccctccatatctttaactgtagcatcatt 562
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>gb|BT012099.1| Arabidopsis thaliana At4g34840 mRNA sequence
          Length = 600

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 445 tcagcaacataagccaccgctgctccctccatatccttgactgtagcttcatt 497
           ||||| ||||| ||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 428 tcagccacataggccactgctgctccctccatatctttaactgtagcatcatt 376
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>gb|BT010195.1| Arabidopsis thaliana At4g34840 gene, complete cds
          Length = 765

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 445 tcagcaacataagccaccgctgctccctccatatccttgactgtagcttcatt 497
           ||||| ||||| ||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 593 tcagccacataggccactgctgctccctccatatctttaactgtagcatcatt 541
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>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence
          Length = 212494

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gggaaacattatacatccaa 209
              ||||||||||||||||||||
Sbjct: 203367 gggaaacattatacatccaa 203386
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>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    gggaaacattatacatccaa 209
              ||||||||||||||||||||
Sbjct: 171292 gggaaacattatacatccaa 171273
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>gb|AC175696.2| Otolemur garnetti, clone XX-8122D2, complete sequence
          Length = 43820

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tttgtaaaattgtacaaaat 109
             ||||||||||||||||||||
Sbjct: 24371 tttgtaaaattgtacaaaat 24390
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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tttgtaaaattgtacaaaat 109
              ||||||||||||||||||||
Sbjct: 101988 tttgtaaaattgtacaaaat 102007
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>gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, complete sequence
          Length = 208961

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     gtttgtaaaattgtacaaaa 108
              ||||||||||||||||||||
Sbjct: 125511 gtttgtaaaattgtacaaaa 125530
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>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence
          Length = 121483

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gaatgtaaaacctgggtgga 182
             ||||||||||||||||||||
Sbjct: 59301 gaatgtaaaacctgggtgga 59282
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>emb|AL627085.13| Mouse DNA sequence from clone RP23-374N19 on chromosome 4, complete
            sequence
          Length = 79097

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  ccagggaaacattatacatc 206
            ||||||||||||||||||||
Sbjct: 6249 ccagggaaacattatacatc 6230
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>dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1399D2
          Length = 169660

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     gtttgtaaaattgtacaaaa 108
              ||||||||||||||||||||
Sbjct: 130745 gtttgtaaaattgtacaaaa 130764
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>dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1762B7, complete
             sequence
          Length = 150581

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gtttgtaaaattgtacaaaa 108
             ||||||||||||||||||||
Sbjct: 31392 gtttgtaaaattgtacaaaa 31411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,436,840
Number of Sequences: 3902068
Number of extensions: 4436840
Number of successful extensions: 75138
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75061
Number of HSP's gapped (non-prelim): 77
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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