ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100244.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
2dbj|AK063419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
4emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.10
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
6emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G... 46 0.10
7emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in... 44 0.41
8gb|AY772984.1| HIV-1 clone M389_clone11 from Kenya nonfunctional... 42 1.6
9gb|AY772983.1| HIV-1 clone M389_clone5 from Kenya gag protein (g... 42 1.6
10ref|XM_479215.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
11gb|AC090972.5| Canis familiaris clone RP81-391L22, complete sequ... 42 1.6
12gb|AC127335.4| Mus musculus BAC clone RP23-150G24 from 8, comple... 42 1.6
13gb|U23448.3| Caenorhabditis elegans cosmid C04A2, complete sequence 42 1.6
14emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in... 42 1.6
15emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A... 42 1.6
16emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 42 1.6
17emb|AL935275.7| Mouse DNA sequence from clone RP23-44F9 on chrom... 42 1.6
18gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Can... 42 1.6
19ref|NM_171015.2| Caenorhabditis elegans DNaJ domain (prokaryotic... 42 1.6
20ref|NM_063000.4| Caenorhabditis elegans DNaJ domain (prokaryotic... 42 1.6
21ref|NM_171014.3| Caenorhabditis elegans DNaJ domain (prokaryotic... 42 1.6
22ref|NM_062999.4| Caenorhabditis elegans DNaJ domain (prokaryotic... 42 1.6
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24gb|AF144817.1|AF144817 HIV-1 isolate DRCM13 from Democratic Repu... 42 1.6
25emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 ... 42 1.6
26dbj|AK100600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27emb|AL731859.12| Zebrafish DNA sequence from clone BUSM1-12G7 in... 42 1.6
28emb|AL928820.8| Zebrafish DNA sequence from clone CH211-105D11 i... 42 1.6
29emb|AL731656.5| Zebrafish DNA sequence from clone BUSM1-256P4 in... 42 1.6
30dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
31gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, comple... 42 1.6
32emb|AL844570.9| Zebrafish DNA sequence from clone DKEY-20D18, co... 42 1.6
33gb|DQ243548.1| Bombyx mori chromosome 11 microsatellite S1105-R ... 42 1.6
34gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 6.4
35gb|U92828.1| Homo sapiens clone 429-7 CTG trinucleotide repeat g... 40 6.4
36gb|DQ479366.1| Phytolacca americana TM6-like protein (TM6-2) mRN... 40 6.4
37gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 40 6.4
38gb|BC116460.1| Xenopus laevis cDNA clone IMAGE:5506347 40 6.4
39gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.4
40gb|BC067923.2| Xenopus tropicalis discs, large homolog 7 (Drosop... 40 6.4
41gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
42emb|CR774200.5| Zebrafish DNA sequence from clone CH211-188G24 i... 40 6.4
43emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o... 40 6.4
44emb|AL513175.10| Human DNA sequence from clone RP11-142L4 on chr... 40 6.4
45emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on ch... 40 6.4
46emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chr... 40 6.4
47emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 40 6.4
48emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
49ref|NM_213673.2| Xenopus tropicalis discs, large homolog 7 (Dros... 40 6.4
50emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 ... 40 6.4
51emb|AL669915.8| Mouse DNA sequence from clone RP23-13B21 on chro... 40 6.4
52gb|BC099363.1| Xenopus laevis cDNA clone MGC:116559 IMAGE:687733... 40 6.4
53dbj|D26094.1|FVBPOAD2A Flavobacterium sp. plasmid pOAD2 DNA, who... 40 6.4
54gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromo... 40 6.4
55gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chrom... 40 6.4
56gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.4
57gb|AC113432.2| Homo sapiens chromosome 5 clone RP11-92G2, comple... 40 6.4
58gb|AC008619.7| Homo sapiens chromosome 5 clone CTB-147C13, compl... 40 6.4
59gb|DQ119137.1| Aplysia californica nonmuscle myosin II mRNA, par... 40 6.4
60emb|BX323593.12| Zebrafish DNA sequence from clone DKEY-107I18 i... 40 6.4
61gb|AC008591.6|AC008591 Homo sapiens chromosome 5 clone CTC-575N7... 40 6.4
62gb|AF295925.1| Streptococcus pneumoniae transposon Tn5252 Orf28,... 40 6.4
63dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
64gb|AC016045.8|AC016045 Homo sapiens chromosome 15 clone RP11-96N... 40 6.4
65emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in li... 40 6.4
66gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 40 6.4
67gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2... 40 6.4
68emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 i... 40 6.4
69dbj|AB017069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.4
70ref|XM_550960.1| Anopheles gambiae str. PEST ENSANGP00000028899 ... 40 6.4
71ref|XM_321211.2| Anopheles gambiae str. PEST ENSANGP00000020067 ... 40 6.4
72gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, compl... 40 6.4
73emb|BX664631.6| Zebrafish DNA sequence from clone DKEY-28H18 in ... 40 6.4
74emb|CR854980.8| Zebrafish DNA sequence from clone DKEY-89J23 in ... 40 6.4
75gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complet... 40 6.4
76emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, ... 40 6.4
77emb|AL844150.6| Zebrafish DNA sequence from clone DKEY-246K2, co... 40 6.4
78gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 6.4 
>dbj|AK100244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056E18, full
           insert sequence
          Length = 1030

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 286 gagcaaggagaggtagccaccctccaggttcttcaccttcgtgaacccggcggcgacaag 345
           |||||||||||||||||| || || ||| || |||| ||| |||| || |||||||||||
Sbjct: 468 gagcaaggagaggtagccgccttcaaggatcctcacgttcttgaatcccgcggcgacaag 409

                                                          
Query: 346 gtcggtggtggcgagcctggaccgcaccccggagcgacagccgacga 392
           ||| |  ||||||||| ||||||| || |||||||| || |||||||
Sbjct: 408 gtctgccgtggcgagcttggaccggacgccggagcggcaaccgacga 362
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>dbj|AK063419.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C02, full
           insert sequence
          Length = 1413

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                       
Query: 286 gagcaaggagaggtagccaccctccaggttcttcaccttcgtgaacccggcggcgacaag 345
           |||||||||||||||||| || || ||| || |||| ||| |||| || |||||||||||
Sbjct: 468 gagcaaggagaggtagccgccttcaaggatcctcacgttcttgaatcccgcggcgacaag 409

                                                          
Query: 346 gtcggtggtggcgagcctggaccgcaccccggagcgacagccgacga 392
           ||| |  ||||||||| ||||||| || |||||||| || |||||||
Sbjct: 408 gtctgccgtggcgagcttggaccggacgccggagcggcaaccgacga 362
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 335      gcggcgacaaggtcggtggtggcgagcctggaccgcaccccggagcg 381
                |||||||||||||| |  ||||||||| ||||||| || ||||||||
Sbjct: 13701980 gcggcgacaaggtctgccgtggcgagcttggaccggacgccggagcg 13701934
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>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145118

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 335   gcggcgacaaggtcggtggtggcgagcctggaccgcaccccggagcg 381
             |||||||||||||| |  ||||||||| ||||||| || ||||||||
Sbjct: 35581 gcggcgacaaggtctgccgtggcgagcttggaccggacgccggagcg 35535
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 335      gcggcgacaaggtcggtggtggcgagcctggaccgcaccccggagcg 381
                |||||||||||||| |  ||||||||| ||||||| || ||||||||
Sbjct: 13656254 gcggcgacaaggtctgccgtggcgagcttggaccggacgccggagcg 13656208
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>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 155451

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 335   gcggcgacaaggtcggtggtggcgagcctggaccgcaccccggagcg 381
             |||||||||||||| |  ||||||||| ||||||| || ||||||||
Sbjct: 17633 gcggcgacaaggtctgccgtggcgagcttggaccggacgccggagcg 17587
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>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19,
             complete sequence
          Length = 72609

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 205   cttgaaaaacaaaggaaaatca 226
             ||||||||||||||||||||||
Sbjct: 61169 cttgaaaaacaaaggaaaatca 61190
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>gb|AY772984.1| HIV-1 clone M389_clone11 from Kenya nonfunctional gag protein (gag)
           gene, complete sequence
          Length = 1586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 tggctgctgctgcctgctgtg 269
           |||||||||||||||||||||
Sbjct: 430 tggctgctgctgcctgctgtg 410
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>gb|AY772983.1| HIV-1 clone M389_clone5 from Kenya gag protein (gag) gene, complete
           cds
          Length = 1562

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 tggctgctgctgcctgctgtg 269
           |||||||||||||||||||||
Sbjct: 436 tggctgctgctgcctgctgtg 416
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>ref|XM_479215.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1349

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 134 atgccttcttttccttggcaa 154
           |||||||||||||||||||||
Sbjct: 709 atgccttcttttccttggcaa 689
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>gb|AC090972.5| Canis familiaris clone RP81-391L22, complete sequence
          Length = 197944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     tacattctcaaagaaaaccaa 54
              |||||||||||||||||||||
Sbjct: 168928 tacattctcaaagaaaaccaa 168948
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>gb|AC127335.4| Mus musculus BAC clone RP23-150G24 from 8, complete sequence
          Length = 215910

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   caaaatgccttcttttccttg 150
             |||||||||||||||||||||
Sbjct: 10216 caaaatgccttcttttccttg 10196
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>gb|U23448.3| Caenorhabditis elegans cosmid C04A2, complete sequence
          Length = 25750

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   cttcttttccttggcaatttc 158
             |||||||||||||||||||||
Sbjct: 24593 cttcttttccttggcaatttc 24613
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>emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in linkage group 9,
             complete sequence
          Length = 168689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   agattaccaaacttgttcctg 199
             |||||||||||||||||||||
Sbjct: 56165 agattaccaaacttgttcctg 56185
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>emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A4 on chromosome 6q12-13 Contains
             part of a novel gene, part of the gene for a novel
             EGF-like domain containing protein and a novel gene,
             complete sequence
          Length = 106273

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   acaaaatgccttcttttcctt 149
             |||||||||||||||||||||
Sbjct: 24023 acaaaatgccttcttttcctt 24043
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
             hansenii
          Length = 1592360

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   tagttttatacatacaaaatg 136
             |||||||||||||||||||||
Sbjct: 91806 tagttttatacatacaaaatg 91826
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>emb|AL935275.7| Mouse DNA sequence from clone RP23-44F9 on chromosome 11, complete
            sequence
          Length = 129328

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 138  cttcttttccttggcaatttc 158
            |||||||||||||||||||||
Sbjct: 3282 cttcttttccttggcaatttc 3262
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>gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 201451

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 111   ctatatagttttatacatacaaaat 135
             ||||||||||||||||| |||||||
Sbjct: 85441 ctatatagttttatacaaacaaaat 85465
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>ref|NM_171015.2| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein)
           family member (dnj-5) (dnj-5) mRNA, complete cds
          Length = 2623

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 138 cttcttttccttggcaatttc 158
           |||||||||||||||||||||
Sbjct: 805 cttcttttccttggcaatttc 785
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>ref|NM_063000.4| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein)
           family member (dnj-5) (dnj-5) mRNA, complete cds
          Length = 3861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 138 cttcttttccttggcaatttc 158
           |||||||||||||||||||||
Sbjct: 815 cttcttttccttggcaatttc 795
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>ref|NM_171014.3| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein)
           family member (dnj-5) (dnj-5) mRNA, complete cds
          Length = 3170

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 138 cttcttttccttggcaatttc 158
           |||||||||||||||||||||
Sbjct: 802 cttcttttccttggcaatttc 782
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>ref|NM_062999.4| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein)
           family member (dnj-5) (dnj-5) mRNA, complete cds
          Length = 3179

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 138 cttcttttccttggcaatttc 158
           |||||||||||||||||||||
Sbjct: 805 cttcttttccttggcaatttc 785
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 134      atgccttcttttccttggcaa 154
                |||||||||||||||||||||
Sbjct: 25888946 atgccttcttttccttggcaa 25888926
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>gb|AF144817.1|AF144817 HIV-1 isolate DRCM13 from Democratic Republic of the Congo gag
           protein (gag) gene, partial cds
          Length = 310

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 249 tggctgctgctgcctgctgtg 269
           |||||||||||||||||||||
Sbjct: 247 tggctgctgctgcctgctgtg 227
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>emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 in linkage group 6,
             complete sequence
          Length = 189742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   gattaccaaacttgttcctga 200
             |||||||||||||||||||||
Sbjct: 77397 gattaccaaacttgttcctga 77417
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>dbj|AK100600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107C09, full
           insert sequence
          Length = 1350

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 134 atgccttcttttccttggcaa 154
           |||||||||||||||||||||
Sbjct: 710 atgccttcttttccttggcaa 690
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>emb|AL731859.12| Zebrafish DNA sequence from clone BUSM1-12G7 in linkage group 9,
             complete sequence
          Length = 135052

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   agattaccaaacttgttcctg 199
             |||||||||||||||||||||
Sbjct: 19836 agattaccaaacttgttcctg 19816
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>emb|AL928820.8| Zebrafish DNA sequence from clone CH211-105D11 in linkage group 19,
             complete sequence
          Length = 155348

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   agattaccaaacttgttcctg 199
             |||||||||||||||||||||
Sbjct: 20015 agattaccaaacttgttcctg 19995
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>emb|AL731656.5| Zebrafish DNA sequence from clone BUSM1-256P4 in linkage group 9,
             complete sequence
          Length = 68167

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   agattaccaaacttgttcctg 199
             |||||||||||||||||||||
Sbjct: 12912 agattaccaaacttgttcctg 12892
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>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_F05
          Length = 132708

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   atgccttcttttccttggcaa 154
             |||||||||||||||||||||
Sbjct: 59394 atgccttcttttccttggcaa 59374
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>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence
          Length = 158740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   caaaatgccttcttttccttg 150
             |||||||||||||||||||||
Sbjct: 31893 caaaatgccttcttttccttg 31913
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>emb|AL844570.9| Zebrafish DNA sequence from clone DKEY-20D18, complete sequence
          Length = 240816

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    gattaccaaacttgttcctga 200
              |||||||||||||||||||||
Sbjct: 206378 gattaccaaacttgttcctga 206358
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>gb|DQ243548.1| Bombyx mori chromosome 11 microsatellite S1105-R sequence
          Length = 625

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 gaaaaacaaaggaaaatcatc 228
           |||||||||||||||||||||
Sbjct: 551 gaaaaacaaaggaaaatcatc 571
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     agccttgaaaaacaaaggaa 221
               ||||||||||||||||||||
Sbjct: 1263495 agccttgaaaaacaaaggaa 1263514
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>gb|U92828.1| Homo sapiens clone 429-7 CTG trinucleotide repeat gene, partial
           sequence
          Length = 141

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 gctgctgctgcctgctgtgg 270
           ||||||||||||||||||||
Sbjct: 138 gctgctgctgcctgctgtgg 119
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>gb|DQ479366.1| Phytolacca americana TM6-like protein (TM6-2) mRNA, partial cds
          Length = 831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 cctccaggttcttcaccttc 325
           ||||||||||||||||||||
Sbjct: 400 cctccaggttcttcaccttc 381
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   tatatagttttatacatacaaaat 135
             ||||||||||||||| ||||||||
Sbjct: 98717 tatatagttttatacgtacaaaat 98740
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>gb|BC116460.1| Xenopus laevis cDNA clone IMAGE:5506347
          Length = 3802

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 146 ccttggcaatttcctctgtacatc 169
           ||||||||||||||||||| ||||
Sbjct: 102 ccttggcaatttcctctgtccatc 79
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     accttcgtgaacccggcggc 339
               ||||||||||||||||||||
Sbjct: 1498455 accttcgtgaacccggcggc 1498436
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>gb|BC067923.2| Xenopus tropicalis discs, large homolog 7 (Drosophila), mRNA (cDNA
            clone MGC:69230 IMAGE:5307771), complete cds
          Length = 2959

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gccttgaaaaacaaaggaaa 222
            ||||||||||||||||||||
Sbjct: 2092 gccttgaaaaacaaaggaaa 2111
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      tatatagttttatacatacaaaat 135
                ||||||||||||||| ||||||||
Sbjct: 32780824 tatatagttttatacgtacaaaat 32780801
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>emb|CR774200.5| Zebrafish DNA sequence from clone CH211-188G24 in linkage group 5,
             complete sequence
          Length = 86527

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gattaccaaacttgttcctg 199
             ||||||||||||||||||||
Sbjct: 79739 gattaccaaacttgttcctg 79720
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>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 74    agtactattggttggcccaagtccaagtctca 105
             ||||| ||| |||| |||||||||||||||||
Sbjct: 42482 agtaccatttgttgccccaagtccaagtctca 42513
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>emb|AL513175.10| Human DNA sequence from clone RP11-142L4 on chromosome 1 Contains the
             3' end of the RGS18 gene for regulator of G-protein
             signalling 18 and two processed pseudogenes similar to
             ATP-binding cassette, sub-family E (OABP), member (ABCE1),
             complete sequence
          Length = 94175

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gctgctgctgcctgctgtgg 270
             ||||||||||||||||||||
Sbjct: 70599 gctgctgctgcctgctgtgg 70580
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>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
            sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   aaaccaatcaaaaatctggt 67
            ||||||||||||||||||||
Sbjct: 7550 aaaccaatcaaaaatctggt 7569
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>emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chromosome 9, complete
             sequence
          Length = 35009

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   tgaaaaacaaaggaaaatca 226
             ||||||||||||||||||||
Sbjct: 12407 tgaaaaacaaaggaaaatca 12388
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
              complete sequence
          Length = 129478

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gattaccaaacttgttcctg 199
              ||||||||||||||||||||
Sbjct: 106499 gattaccaaacttgttcctg 106518
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     ccggcggcgacaaggtcggt 351
               ||||||||||||||||||||
Sbjct: 3620510 ccggcggcgacaaggtcggt 3620491
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>ref|NM_213673.2| Xenopus tropicalis discs, large homolog 7 (Drosophila) (dlg7), mRNA
          Length = 2959

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gccttgaaaaacaaaggaaa 222
            ||||||||||||||||||||
Sbjct: 2092 gccttgaaaaacaaaggaaa 2111
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>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13,
             complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gattaccaaacttgttcctg 199
             ||||||||||||||||||||
Sbjct: 42707 gattaccaaacttgttcctg 42688
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>emb|AL669915.8| Mouse DNA sequence from clone RP23-13B21 on chromosome 11 no genes,
              complete sequence
          Length = 193440

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     aaagaaaaccaatcaaaaat 62
              ||||||||||||||||||||
Sbjct: 131488 aaagaaaaccaatcaaaaat 131469
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>gb|BC099363.1| Xenopus laevis cDNA clone MGC:116559 IMAGE:6877338, complete cds
          Length = 1886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 gccttgaaaaacaaaggaaa 222
           ||||||||||||||||||||
Sbjct: 892 gccttgaaaaacaaaggaaa 911
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>dbj|D26094.1|FVBPOAD2A Flavobacterium sp. plasmid pOAD2 DNA, whole sequence
          Length = 45519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   cttcaccttcgtgaacccgg 335
             ||||||||||||||||||||
Sbjct: 13808 cttcaccttcgtgaacccgg 13827
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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
             sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aaaccaatcaaaaatctggt 67
             ||||||||||||||||||||
Sbjct: 21830 aaaccaatcaaaaatctggt 21849
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>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
             sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aaaccaatcaaaaatctggt 67
             ||||||||||||||||||||
Sbjct: 94052 aaaccaatcaaaaatctggt 94071
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 385     gccgacgaggagccggtcgt 404
               ||||||||||||||||||||
Sbjct: 2280032 gccgacgaggagccggtcgt 2280013
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>gb|AC113432.2| Homo sapiens chromosome 5 clone RP11-92G2, complete sequence
          Length = 65596

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  tttccttggcaatttcctct 162
            ||||||||||||||||||||
Sbjct: 3780 tttccttggcaatttcctct 3761
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>gb|AC008619.7| Homo sapiens chromosome 5 clone CTB-147C13, complete sequence
          Length = 91048

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tttccttggcaatttcctct 162
             ||||||||||||||||||||
Sbjct: 10518 tttccttggcaatttcctct 10537
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>gb|DQ119137.1| Aplysia californica nonmuscle myosin II mRNA, partial cds
          Length = 5706

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  cctccaggttcttcaccttc 325
            ||||||||||||||||||||
Sbjct: 4978 cctccaggttcttcaccttc 4959
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>emb|BX323593.12| Zebrafish DNA sequence from clone DKEY-107I18 in linkage group 14,
             complete sequence
          Length = 198776

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   tatatagttttatacataca 131
             ||||||||||||||||||||
Sbjct: 97814 tatatagttttatacataca 97833
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>gb|AC008591.6|AC008591 Homo sapiens chromosome 5 clone CTC-575N7, complete sequence
          Length = 192814

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    atacatacaaaatgccttcttttc 146
              |||||| |||||||||||||||||
Sbjct: 106067 atacatgcaaaatgccttcttttc 106044
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>gb|AF295925.1| Streptococcus pneumoniae transposon Tn5252 Orf28, Orf27, Orf26,
            Orf25, Orf24, Orf23, Orf22, Orf21, and Orf20 genes,
            complete cds
          Length = 9521

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   aaagaaaaccaatcaaaaat 62
            ||||||||||||||||||||
Sbjct: 2903 aaagaaaaccaatcaaaaat 2884
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 112      tatatagttttatacatacaaaat 135
                ||||||||||||||| ||||||||
Sbjct: 32871334 tatatagttttatacgtacaaaat 32871311
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>gb|AC016045.8|AC016045 Homo sapiens chromosome 15 clone RP11-96N2 map 15q21, complete sequence
          Length = 164868

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tggctgctgctgcctgctgt 268
             ||||||||||||||||||||
Sbjct: 20743 tggctgctgctgcctgctgt 20724
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>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete
              sequence
          Length = 158656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    tacatacaaaatgccttcttttcc 147
              ||||||||| ||||||||||||||
Sbjct: 110507 tacatacaagatgccttcttttcc 110484
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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187215

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ccatacattctcaaagaaaa 50
             ||||||||||||||||||||
Sbjct: 39949 ccatacattctcaaagaaaa 39930
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>gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2, complete sequence
          Length = 206691

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 131    aaaatgccttcttttccttggcaatttc 158
              ||||| |||||||||||| |||||||||
Sbjct: 134166 aaaataccttcttttcctgggcaatttc 134139
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>emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 in linkage group 18,
              complete sequence
          Length = 159822

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gattaccaaacttgttcctg 199
              ||||||||||||||||||||
Sbjct: 122636 gattaccaaacttgttcctg 122655
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>dbj|AB017069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8
          Length = 88128

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tatagttttatacatacaaa 133
             ||||||||||||||||||||
Sbjct: 17588 tatagttttatacatacaaa 17607
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>ref|XM_550960.1| Anopheles gambiae str. PEST ENSANGP00000028899
           (ENSANGG00000017578), partial mRNA
          Length = 1857

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 caggttgcgctccttgccgt 461
           ||||||||||||||||||||
Sbjct: 243 caggttgcgctccttgccgt 224
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>ref|XM_321211.2| Anopheles gambiae str. PEST ENSANGP00000020067
           (ENSANGG00000017578), partial mRNA
          Length = 2139

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 caggttgcgctccttgccgt 461
           ||||||||||||||||||||
Sbjct: 318 caggttgcgctccttgccgt 299
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>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence
          Length = 144031

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tatatagttttatacataca 131
              ||||||||||||||||||||
Sbjct: 125757 tatatagttttatacataca 125776
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>emb|BX664631.6| Zebrafish DNA sequence from clone DKEY-28H18 in linkage group 22,
              complete sequence
          Length = 220242

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    gattaccaaacttgttcctg 199
              ||||||||||||||||||||
Sbjct: 133406 gattaccaaacttgttcctg 133387
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>emb|CR854980.8| Zebrafish DNA sequence from clone DKEY-89J23 in linkage group 5,
             complete sequence
          Length = 82050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   caaaatgccttcttttcctt 149
             ||||||||||||||||||||
Sbjct: 18998 caaaatgccttcttttcctt 19017
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>gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complete sequence
          Length = 212626

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ttccttggcaatttcctctg 163
             ||||||||||||||||||||
Sbjct: 98350 ttccttggcaatttcctctg 98369
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>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence
          Length = 182033

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gattaccaaacttgttcctg 199
             ||||||||||||||||||||
Sbjct: 27918 gattaccaaacttgttcctg 27899
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>emb|AL844150.6| Zebrafish DNA sequence from clone DKEY-246K2, complete sequence
          Length = 203058

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gattaccaaacttgttcctg 199
             ||||||||||||||||||||
Sbjct: 38594 gattaccaaacttgttcctg 38575
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     agccttgaaaaacaaaggaa 221
               ||||||||||||||||||||
Sbjct: 1257533 agccttgaaaaacaaaggaa 1257552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,002,658
Number of Sequences: 3902068
Number of extensions: 5002658
Number of successful extensions: 110646
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110222
Number of HSP's gapped (non-prelim): 424
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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