ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105780.1| Zea mays PCO081534 mRNA sequence Length = 1009 Score = 305 bits (154), Expect = 7e-80 Identities = 274/314 (87%) Strand = Plus / Minus Query: 192 atggacgggtggctcccgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctg 251 |||||||| ||||| ||||||||||||| ||||||||| |||||||| || ||||||||| Sbjct: 1007 atggacggatggcttccgtagtagtgcttcctgatgtgttccatgttgacggtgctgctg 948 Query: 252 atcccggggatctggtagatgtccttggtgtagttgaacaggttggggtactccctcagg 311 || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 947 atgccggggatctggtatatgtccttggtgtagttgaacaggtttgggtactccctcagc 888 Query: 312 agcttcttgttgcacttgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacg 371 |||||||||||||||||||||||||| ||||| ||||| || || | ||||| || ||| Sbjct: 887 agcttcttgttgcacttgaagtgaacggcgtagacctcatcgaaccgaatgagagtcacg 828 Query: 372 aagaggcggacgtcggcctccgtcagctggttgccgcacatgtatcgctgcttgctcagg 431 || ||||| | ||| ||||| |||||||||| ||| || || || ||| |||||| || Sbjct: 827 aacaggcgaatgtccgcctcagtcagctggtcgccacaaatatagcgccgcttgccaaga 768 Query: 432 atctcctcgcacttgtccagagcctcgtacagcttcgtgacggcctcgtcgtatggcccc 491 ||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||| Sbjct: 767 atctcctcgcatctgtccagagcctcgtacaatctcgtcacggcctcgtcgtacggcccc 708 Query: 492 tgcttcttggcgaa 505 |||||||||||||| Sbjct: 707 tgcttcttggcgaa 694
>dbj|AK105036.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B07, full insert sequence Length = 584 Score = 208 bits (105), Expect = 1e-50 Identities = 195/225 (86%) Strand = Plus / Minus Query: 125 cctctctctgtcatggggagcattgtagtcgatgttggggccttgggggatgatcccgta 184 |||||||||||| || ||||| ||||| |||||||| |||||| |||||||||||||| Sbjct: 229 cctctctctgtcgtgtggagcgttgtaatcgatgttagggcctgcagggatgatcccgta 170 Query: 185 ggggttgatggacgggtggctcccgtagtagtgctgcctgatgtgctccatgttcaccgt 244 ||| || |||||||| ||||| || |||||||||| || |||||||||||||| ||||| Sbjct: 169 gggatttatggacggatggcttccatagtagtgctttcttatgtgctccatgttaaccgt 110 Query: 245 gctgctgatcccggggatctggtagatgtccttggtgtagttgaacaggttggggtactc 304 ||||||||| || || ||||||||||||||||||||||| |||||||| |||||||| || Sbjct: 109 gctgctgatgccaggaatctggtagatgtccttggtgtaattgaacagattggggtattc 50 Query: 305 cctcaggagcttcttgttgcacttgaagtgaactgcgtaaacctc 349 ||| |||||| | |||||||| |||||||| || || |||||||| Sbjct: 49 cctgaggagccttttgttgcatttgaagtggacagcataaacctc 5
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 206 bits (104), Expect = 5e-50 Identities = 194/224 (86%) Strand = Plus / Plus Query: 125 cctctctctgtcatggggagcattgtagtcgatgttggggccttgggggatgatcccgta 184 |||||||||||| || ||||| ||||| |||||||| |||||| |||||||||||||| Sbjct: 12731017 cctctctctgtcgtgtggagcgttgtaatcgatgttagggcctgcagggatgatcccgta 12731076 Query: 185 ggggttgatggacgggtggctcccgtagtagtgctgcctgatgtgctccatgttcaccgt 244 ||| || |||||||| ||||| || |||||||||| || |||||||||||||| ||||| Sbjct: 12731077 gggatttatggacggatggcttccatagtagtgctttcttatgtgctccatgttaaccgt 12731136 Query: 245 gctgctgatcccggggatctggtagatgtccttggtgtagttgaacaggttggggtactc 304 ||||||||| || || ||||||||||||||||||||||| |||||||| |||||||| || Sbjct: 12731137 gctgctgatgccaggaatctggtagatgtccttggtgtaattgaacagattggggtattc 12731196 Query: 305 cctcaggagcttcttgttgcacttgaagtgaactgcgtaaacct 348 ||| |||||| | |||||||| |||||||| || || ||||||| Sbjct: 12731197 cctgaggagccttttgttgcatttgaagtggacagcataaacct 12731240 Score = 42.1 bits (21), Expect = 1.7 Identities = 90/113 (79%) Strand = Plus / Plus Query: 345 acctcgtcaaatcttatgagcgtgacgaagaggcggacgtcggcctccgtcagctggttg 404 ||||| ||||||||||| || || || || | ||| || || ||||| |||| ||||||| Sbjct: 12732754 acctcatcaaatcttataagagttacaaacaagcgaacatcagcctctgtcaactggttg 12732813 Query: 405 ccgcacatgtatcgctgcttgctcaggatctcctcgcacttgtccagagcctc 457 || || || || || ||| |||| || || ||||| || |||||||||||||| Sbjct: 12732814 ccacatatataacgttgcctgcttagaatttcctcacatttgtccagagcctc 12732866
>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0086N11 Length = 146185 Score = 206 bits (104), Expect = 5e-50 Identities = 194/224 (86%) Strand = Plus / Plus Query: 125 cctctctctgtcatggggagcattgtagtcgatgttggggccttgggggatgatcccgta 184 |||||||||||| || ||||| ||||| |||||||| |||||| |||||||||||||| Sbjct: 79294 cctctctctgtcgtgtggagcgttgtaatcgatgttagggcctgcagggatgatcccgta 79353 Query: 185 ggggttgatggacgggtggctcccgtagtagtgctgcctgatgtgctccatgttcaccgt 244 ||| || |||||||| ||||| || |||||||||| || |||||||||||||| ||||| Sbjct: 79354 gggatttatggacggatggcttccatagtagtgctttcttatgtgctccatgttaaccgt 79413 Query: 245 gctgctgatcccggggatctggtagatgtccttggtgtagttgaacaggttggggtactc 304 ||||||||| || || ||||||||||||||||||||||| |||||||| |||||||| || Sbjct: 79414 gctgctgatgccaggaatctggtagatgtccttggtgtaattgaacagattggggtattc 79473 Query: 305 cctcaggagcttcttgttgcacttgaagtgaactgcgtaaacct 348 ||| |||||| | |||||||| |||||||| || || ||||||| Sbjct: 79474 cctgaggagccttttgttgcatttgaagtggacagcataaacct 79517 Score = 42.1 bits (21), Expect = 1.7 Identities = 90/113 (79%) Strand = Plus / Plus Query: 345 acctcgtcaaatcttatgagcgtgacgaagaggcggacgtcggcctccgtcagctggttg 404 ||||| ||||||||||| || || || || | ||| || || ||||| |||| ||||||| Sbjct: 81031 acctcatcaaatcttataagagttacaaacaagcgaacatcagcctctgtcaactggttg 81090 Query: 405 ccgcacatgtatcgctgcttgctcaggatctcctcgcacttgtccagagcctc 457 || || || || || ||| |||| || || ||||| || |||||||||||||| Sbjct: 81091 ccacatatataacgttgcctgcttagaatttcctcacatttgtccagagcctc 81143
>ref|NM_118108.5| Arabidopsis thaliana unknown protein AT4G19880 transcript variant AT4G19880.1 mRNA, complete cds Length = 1418 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1083 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 1024 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 1023 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 964 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 963 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 904 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 903 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 861
>gb|BT000887.1| Arabidopsis thaliana clone C105363 unknown protein (At4g19880) mRNA, complete cds Length = 1102 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1036 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 977 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 976 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 917 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 916 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 857 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 856 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 814
>gb|AF370272.1| Arabidopsis thaliana unknown protein (At4g19880) mRNA, partial cds Length = 1310 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1024 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 965 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 964 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 905 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 904 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 845 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 844 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 802
>emb|BX826373.1|CNS0A41Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB1ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1308 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1077 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 1018 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 1017 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 958 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 957 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 898 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 897 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 855
>emb|BX826293.1|CNS0A458 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZH12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1193 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1034 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 975 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 974 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 915 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 914 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 855 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 854 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 812
>emb|BX827166.1|CNS0A3PD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS19ZA10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1358 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1042 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 983 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 982 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 923 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 922 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 863 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 862 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 820
>emb|BX828739.1|CNS0A3IB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZD01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1072 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 963 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 904 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 903 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 844 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 843 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 784 Query: 328 tgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 783 tgaagtggactgcataaacctcgtcaaatcttataagggtgac 741
>emb|BX826752.1|CNS0A43U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1258 Score = 143 bits (72), Expect = 6e-31 Identities = 187/224 (83%), Gaps = 1/224 (0%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1084 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 1025 Query: 208 cgtagtagtgctgcctgat-gtgctccatgttcaccgtgctgctgatcccggggatctgg 266 | ||||| |||||| |||| ||| | ||||| |||||||| || || |||||||||||| Sbjct: 1024 catagtaatgctgcttgattgtgatttatgttaaccgtgctactcataccggggatctgg 965 Query: 267 tagatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcac 326 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| Sbjct: 964 aaaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcat 905 Query: 327 ttgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 |||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 904 ttgaagtggactgcataaacctcgtcaaatcttataagggtgac 861
>ref|NM_001036595.1| Arabidopsis thaliana unknown protein AT4G19880 transcript variant AT4G19880.3 mRNA, complete cds Length = 1422 Score = 139 bits (70), Expect = 1e-29 Identities = 188/227 (82%), Gaps = 4/227 (1%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1087 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 1028 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 1027 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 968 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 967 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 908 Query: 328 tgaagtgaactgcgtaa----acctcgtcaaatcttatgagcgtgac 370 ||||||| ||||| ||| ||||||||||||||||| || ||||| Sbjct: 907 tgaagtggactgcataaacttacctcgtcaaatcttataagggtgac 861
>ref|NM_001036594.1| Arabidopsis thaliana unknown protein AT4G19880 transcript variant AT4G19880.2 mRNA, complete cds Length = 1496 Score = 137 bits (69), Expect = 4e-29 Identities = 168/201 (83%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1161 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 1102 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 1101 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 1042 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 1041 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 982 Query: 328 tgaagtgaactgcgtaaacct 348 ||||||| ||||| ||||||| Sbjct: 981 tgaagtggactgcataaacct 961
>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51 Length = 197114 Score = 137 bits (69), Expect = 4e-29 Identities = 168/201 (83%) Strand = Plus / Plus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 174409 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 174468 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 174469 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 174528 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 174529 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 174588 Query: 328 tgaagtgaactgcgtaaacct 348 ||||||| ||||| ||||||| Sbjct: 174589 tgaagtggactgcataaacct 174609
>emb|AL024486.1|ATT16H5 Arabidopsis thaliana DNA chromosome 4, BAC clone T16H5 (ESSAII project) Length = 95417 Score = 137 bits (69), Expect = 4e-29 Identities = 168/201 (83%) Strand = Plus / Plus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 94327 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 94386 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggt 267 | ||||| |||||| ||||||| | |||||| |||||||| || || |||||||||||| Sbjct: 94387 catagtaatgctgcttgatgtgattcatgttaaccgtgctactcataccggggatctgga 94446 Query: 268 agatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcact 327 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| | Sbjct: 94447 aaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcatt 94506 Query: 328 tgaagtgaactgcgtaaacct 348 ||||||| ||||| ||||||| Sbjct: 94507 tgaagtggactgcataaacct 94527
>emb|BX826386.1|CNS0A40C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB20ZE03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1312 Score = 135 bits (68), Expect = 2e-28 Identities = 186/224 (83%), Gaps = 1/224 (0%) Strand = Plus / Minus Query: 148 tgtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctcc 207 |||| |||||||| || || || ||||||||||| | |||||||| ||||||||||| | Sbjct: 1005 tgtaatcgatgtttggtccatgagggatgatcccaaaagggttgatcgacgggtggcttc 946 Query: 208 cgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccgggg-atctgg 266 | ||||| |||||| |||||| | ||||| |||||||| || || |||||| |||||| Sbjct: 945 catagtaatgctgcttgatgttatttatgttaaccgtgctactcataccgggggatctgg 886 Query: 267 tagatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcac 326 | ||||| || ||||||||||||| || || |||||||| | ||| ||||||||||| Sbjct: 885 aaaatgtctttcgtgtagttgaacaaattcggatactcccttatgagtttcttgttgcat 826 Query: 327 ttgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 |||||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 825 ttgaagtggactgcataaacctcgtcaaatcttataagggtgac 782
>ref|NM_123870.1| Arabidopsis thaliana unknown protein AT5G45020 mRNA, complete cds Length = 1227 Score = 129 bits (65), Expect = 1e-26 Identities = 185/225 (82%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 1063 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 1004 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 1003 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 944 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 943 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 884 Query: 329 gaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 883 gaagtgaactgcataaacctcatcaaatcttatgagagtgacgaa 839
>gb|BT000547.1| Arabidopsis thaliana unknown protein (At5g45020/K21C13_21) mRNA, complete cds Length = 978 Score = 129 bits (65), Expect = 1e-26 Identities = 185/225 (82%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 942 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 883 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 882 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 823 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 822 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 763 Query: 329 gaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 762 gaagtgaactgcataaacctcatcaaatcttatgagagtgacgaa 718
>gb|AF375406.1| Arabidopsis thaliana AT5g45020/K21C13_21 mRNA, complete cds Length = 1227 Score = 129 bits (65), Expect = 1e-26 Identities = 185/225 (82%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 1063 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 1004 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 1003 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 944 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 943 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 884 Query: 329 gaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 883 gaagtgaactgcataaacctcatcaaatcttatgagagtgacgaa 839
>emb|BX829570.1|CNS0A05B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZG08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 535 Score = 129 bits (65), Expect = 1e-26 Identities = 185/225 (82%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 396 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 337 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 336 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 277 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 276 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 217 Query: 329 gaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 216 gaagtgaactgcataaacctcatcaaatcttatgagagtgacgaa 172
>emb|BX830492.1|CNS0A27R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1611 Score = 121 bits (61), Expect = 2e-24 Identities = 184/225 (81%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 1447 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 1388 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 1387 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 1328 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 1327 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 1268 Query: 329 gaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 ||||| |||||| |||||||| |||||||||||||| |||||||| Sbjct: 1267 gaagttaactgcataaacctcatcaaatcttatgagagtgacgaa 1223
>gb|AY917145.1| Thlaspi caerulescens glutathione transferase (gst) mRNA, complete cds Length = 1325 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 198 gggtggctcccgtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccg 257 |||||||| |||||||| |||||| ||||||| ||||||||| |||| || ||| Sbjct: 1048 gggtggcttccgtagtaatgctgcttgatgtgactcatgttcactgtgccatccataccg 989 Query: 258 gggatctggtagatgtccttggtgtagttgaacaggttggggtactccctcaggagcttc 317 | ||||||| | ||||| || |||||||||||||| || || |||||||||| ||| ||| Sbjct: 988 gagatctggaatatgtctttcgtgtagttgaacagattcggatactccctcaagagtttc 929 Query: 318 ttgttgcacttgaagtgaactgcgtaaacctcgtcaaatcttatgagcgtgac 370 ||||||||||||||||| || || ||||||||||| |||||||| || ||||| Sbjct: 928 ttgttgcacttgaagtggaccgcataaacctcgtcgaatcttataagagtgac 876
>dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13 Length = 75709 Score = 95.6 bits (48), Expect = 1e-16 Identities = 162/200 (81%) Strand = Plus / Minus Query: 149 gtagtcgatgttggggccttgggggatgatcccgtaggggttgatggacgggtggctccc 208 ||||||||| |||||||| || |||||||||||| | ||||| || | |||||||| || Sbjct: 66957 gtagtcgatattggggccgtgagggatgatcccgaatgggtttatcgtagggtggcttcc 66898 Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgtgctgctgatcccggggatctggta 268 |||||| || ||| | ||||| |||||||| || ||||| || || ||| | || ||||| Sbjct: 66897 gtagtaatgttgcttaatgtgttccatgtttacggtgctactcatgccgtgtatttggta 66838 Query: 269 gatgtccttggtgtagttgaacaggttggggtactccctcaggagcttcttgttgcactt 328 ||||| || |||||||||| | || |||||||||| | ||| |||||||||| || Sbjct: 66837 aatgtcttttatgtagttgaagatattcgggtactcccgtaagagtctcttgttgcattt 66778 Query: 329 gaagtgaactgcgtaaacct 348 |||||||||||| ||||||| Sbjct: 66777 gaagtgaactgcataaacct 66758 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 acctcgtcaaatcttatgagcgtgacgaa 373 ||||| |||||||||||||| |||||||| Sbjct: 66681 acctcatcaaatcttatgagagtgacgaa 66653 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 acctcgtcaaatcttatgagcgtgacgaa 373 ||||||||||||||||||| |||||||| Sbjct: 60866 acctcgtcaaatcttatgacagtgacgaa 60838
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 312 agcttcttgttgcacttgaagtgaactgcgtaaacct 348 ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 17593 agcttcttgttacacttaaagtgaactgcataaacct 17629
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 209 gtagtagtgctgcctgatgtgctccatgttcaccgt 244 ||||||||||| | ||||||| |||||||||||||| Sbjct: 2099831 gtagtagtgctccgtgatgtggtccatgttcaccgt 2099866
>ref|NM_123867.1| Arabidopsis thaliana unknown protein AT5G44990 mRNA, complete cds Length = 1053 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 339 gcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||| |||||||||||||||||| |||||||| Sbjct: 743 gcgtaagcctcgtcaaatcttatgacagtgacgaa 709
>gb|DQ447039.1| Arabidopsis thaliana clone pENTR221-At5g44990 hypothetical protein (At5g44990) mRNA, complete cds Length = 1053 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 339 gcgtaaacctcgtcaaatcttatgagcgtgacgaa 373 |||||| |||||||||||||||||| |||||||| Sbjct: 743 gcgtaagcctcgtcaaatcttatgacagtgacgaa 709
>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome Length = 12204 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Plus Query: 200 gtggctcccgtagtagtgctgcctgatgtgctccatgt 237 |||||| | ||||||||||||| ||| ||||||||||| Sbjct: 6289 gtggctgcggtagtagtgctgcttgacgtgctccatgt 6326
>gb|AF512952.1| Sphingobium chlorophenolicum ATCC 39723 pentachlorophenol degradation gene cluster, complete sequence Length = 23933 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 375 aggcggacgtcggcctccgtcagctggttgccg 407 ||||||| |||||||||||||||| ||| |||| Sbjct: 22339 aggcggatgtcggcctccgtcagccggtcgccg 22371
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 176 gatcccgtaggggttgatggacgggtggctcccgtagtagtgctgcctgatgtgctccat 235 |||||||| |||||||||| | ||||||| ||| ||||||| | ||| |||||||| Sbjct: 4507200 gatcccgttcgggttgatggtcttgtggctcatgtaatagtgcttctggatatgctccat 4507141 Query: 236 gttcaccgt 244 ||||||||| Sbjct: 4507140 gttcaccgt 4507132
>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187484 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aacagcctctctctgtcatg 139 |||||||||||||||||||| Sbjct: 150455 aacagcctctctctgtcatg 150436
>ref|XM_957558.1| Neurospora crassa OR74A hypothetical protein (NCU07981.1) partial mRNA Length = 3033 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 atgagcgtgacgaagaggcg 379 |||||||||||||||||||| Sbjct: 2510 atgagcgtgacgaagaggcg 2529
>ref|XM_328686.1| Neurospora crassa OR74A hypothetical protein (NCU07981.1) partial mRNA Length = 3033 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 atgagcgtgacgaagaggcg 379 |||||||||||||||||||| Sbjct: 2510 atgagcgtgacgaagaggcg 2529
>gb|AC132290.3| Mus musculus BAC clone RP24-318H2 from chromosome 10, complete sequence Length = 152306 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaagcaaagcaaaaccaca 71 |||||||||||||||||||| Sbjct: 133125 acaagcaaagcaaaaccaca 133106
>ref|XM_566840.1| Cryptococcus neoformans var. neoformans JEC21 chitin synthase 6 (CNA05300) partial mRNA Length = 3958 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 atcttatgagcgtgacgaagaggc 378 |||| ||||||||||||||||||| Sbjct: 3712 atctcatgagcgtgacgaagaggc 3735
>gb|AC122880.4| Mus musculus BAC clone RP23-77F18 from 8, complete sequence Length = 189549 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaagcaaagcaaaaccaca 71 |||||||||||||||||||| Sbjct: 93543 acaagcaaagcaaaaccaca 93524
>emb|AL031719.12|HS380F5 Human DNA sequence from clone LA16c-380F5 on chromosome 16 Contains part of the gene KIAA0590, ESTs, STSs, GSSs and three putative CpG islands, complete sequence Length = 44653 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tgttggggccttgggggatg 176 |||||||||||||||||||| Sbjct: 19145 tgttggggccttgggggatg 19126
>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence Length = 255667 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaagcaaagcaaaaccaca 71 |||||||||||||||||||| Sbjct: 103785 acaagcaaagcaaaaccaca 103766
>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 Length = 279011 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tgttggggccttgggggatg 176 |||||||||||||||||||| Sbjct: 206961 tgttggggccttgggggatg 206942
>dbj|AB211187.1| Lycopersicon esculentum nii1 mRNA for nitrite reductase, partial cds Length = 703 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 agtagtgctgcctgatgtgc 230 |||||||||||||||||||| Sbjct: 177 agtagtgctgcctgatgtgc 196
>gb|AC005772.1|AC005772 Homo sapiens chromosome 17, clone hRPK.924_A_14, complete sequence Length = 175339 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 caaagcaaaaccacagcacc 76 |||||||||||||||||||| Sbjct: 118238 caaagcaaaaccacagcacc 118219
>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence Length = 198160 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aacagcctctctctgtcatg 139 |||||||||||||||||||| Sbjct: 5152 aacagcctctctctgtcatg 5133 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,283,843 Number of Sequences: 3902068 Number of extensions: 3283843 Number of successful extensions: 66752 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66620 Number of HSP's gapped (non-prelim): 129 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
