Clone Information

BLAST Search Result

Clone Name	rbart40d07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1	70	2e-12
2	ARFJ_ARATH (Q9SKN5) Auxin response factor 10	39	0.006
3	ARFP_ARATH (Q93YR9) Auxin response factor 16	39	0.008
4	ARFE_ARATH (P93024) Auxin response factor 5 (Transcription facto...	38	0.013
5	ARFQ_ARATH (Q84WU6) Auxin response factor 17	37	0.029
6	ARFH_ARATH (Q9FGV1) Auxin response factor 8	36	0.064
7	ARFL_ARATH (Q9XID4) Putative auxin response factor 12	35	0.084
8	ARFV_ARATH (Q9C8N7) Putative auxin response factor 22	35	0.084
9	ARFF_ARATH (Q9ZTX8) Auxin response factor 6	35	0.11
10	ARFO_ARATH (Q9LQE3) Putative auxin response factor 15	34	0.19
11	ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)	34	0.24
12	ARFD_ARATH (Q9ZTX9) Auxin response factor 4	33	0.32
13	ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive p...	33	0.32
14	ARFI_ARATH (Q9XED8) Auxin response factor 9	33	0.32
15	ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp...	33	0.32
16	ARFU_ARATH (Q9C8N9) Putative auxin response factor 21	33	0.42
17	ARFT_ARATH (Q9C7I9) Putative auxin response factor 20	33	0.42
18	ARFR_ARATH (Q9C5W9) Auxin response factor 18	33	0.54
19	ARFA_ARATH (Q8L7G0) Auxin response factor 1	33	0.54
20	ARFK_ARATH (Q9ZPY6) Auxin response factor 11	33	0.54
21	ARFN_ARATH (Q9LQE8) Putative auxin response factor 14	32	0.71
22	RIMK_HAEI8 (Q4QKP3) Ribosomal protein S6 modification protein	32	0.71
23	RIMK_HAEIN (P45241) Ribosomal protein S6 modification protein	32	0.93
24	TNR1B_RAT (Q80WY6) Tumor necrosis factor receptor superfamily me...	32	1.2
25	TNR1B_MOUSE (P25119) Tumor necrosis factor receptor superfamily ...	30	2.7
26	ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protei...	30	3.5
27	YNJ5_CAEEL (P34549) Hypothetical protein R10E11.5	30	3.5
28	MUTL_THEAQ (P96082) DNA mismatch repair protein mutL	30	3.5
29	SYI_PSEPK (Q88Q92) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	30	3.5
30	YA71_SCHPO (Q09758) Hypothetical protein C24H6.01c in chromosome I	25	4.6
31	ACM5_MACMU (P56490) Muscarinic acetylcholine receptor M5	30	4.6
32	NU4M_PANTR (P03906) NADH-ubiquinone oxidoreductase chain 4 (EC 1...	30	4.6
33	5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Sero...	30	4.6
34	TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor	29	6.0
35	HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant prot...	29	6.0
36	ARFW_ARATH (Q9LP07) Putative auxin response factor 23	29	6.0
37	ACM5_MOUSE (Q920H4) Muscarinic acetylcholine receptor M5	29	6.0
38	XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)	29	7.8
39	SYI_PSEF5 (Q4K5U4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	7.8
40	MRKD_KLEPN (P21648) Fimbria adhesin protein precursor	29	7.8

>RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1|
          Length = 344

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCK--KNTTMNGGK 319
           YSYWNSSQSYVLTKGWS FV+EK L AGD + FS S  GQ++QL+I  K    + ++ G+
Sbjct: 242 YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRS-NGQDQQLYIGWKSRSGSDLDAGR 300

Query: 318 TALPLPVVETAKGEQDHVVKLFGVDIA 238
                            V++LFGV+I+
Sbjct: 301 -----------------VLRLFGVNIS 310

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>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYG 376
           Y  + + ++LT GWS+FV +K L AGDSIVF  S  G
Sbjct: 171 YRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESG 207

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>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYG 376
           Y  + + ++LT GWS+FV +K L AGDSIVF  +  G
Sbjct: 176 YRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENG 212

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>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALP 307
           Y    + ++LT GWS FV  K L AGDS++F      ++ QL +  ++    N  +TALP
Sbjct: 214 YRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRD---EKSQLMVGVRR---ANRQQTALP 267

Query: 306 LPVV 295
             V+
Sbjct: 268 SSVL 271

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>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKN--TTMNGGKT 316
           Y  + + ++LT GWS FV  K L AGDS+VF   +     ++FI  ++   ++ +GG +
Sbjct: 175 YRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKS---ADEMFIGVRRTPISSSDGGSS 230

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>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNT 337
           ++LT GWS FV  K L AGDS++F  +   ++ QLF+  +  T
Sbjct: 189 HLLTTGWSVFVSAKRLVAGDSVIFIRN---EKNQLFLGIRHAT 228

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>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           ++Y  + Q ++LT GW++F   K L AGD IVF     G+
Sbjct: 180 HNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGE 219

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>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           ++Y  + Q ++LT GW++F   K L AGD IVF     G+
Sbjct: 178 HNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGE 217

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>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALPLPVVET 289
           ++LT GWS FV  K L AGDS++F    +  + QL +  ++    N  +T +P  V+ +
Sbjct: 190 HLLTTGWSVFVSAKRLVAGDSVLF---IWNDKNQLLLGIRR---ANRPQTVMPSSVLSS 242

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>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           +SY  + Q ++LT GW+ F   K L  GD IVF     G+
Sbjct: 180 HSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRGETGE 219

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>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNG 325
           Y    + ++LT GWS+FV +K L +GD+++F     G + +L +  ++ + + G
Sbjct: 215 YRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF---LRGDDGKLRLGVRRASQIEG 265

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>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           Y    + ++LT GWS FV +K L +GD+++F     G+
Sbjct: 233 YRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGE 270

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>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVF 394
           Y    + ++LT GWS FV  K L AGDS++F
Sbjct: 182 YRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF 212

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>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           ++LT GWS+FV  K L AGD+ VF     G+
Sbjct: 179 HLLTTGWSTFVTSKRLVAGDTFVFLRGENGE 209

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>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVF 394
           Y    + ++LT GWS FV  K L AGDS++F
Sbjct: 183 YRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF 213

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>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           ++Y  + Q + LT GW+ F+  K L  GD IVF     G+
Sbjct: 180 HNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGE 219

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>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 492 YSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           +SY  + Q + LT GW+ F   K L  GD IVF     G+
Sbjct: 180 HSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGE 219

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>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVF 394
           ++LT GWS+FV  K L AGD+ VF
Sbjct: 191 HLLTTGWSTFVSSKRLVAGDAFVF 214

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>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALPLPVVET 289
           ++LT GWS FV  K L AGD+ +F     G+ ++L +  +++      +T +P  V+ +
Sbjct: 187 HLLTTGWSVFVSSKKLVAGDAFIF---LRGENEELRVGVRRHMRQ---QTNIPSSVISS 239

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>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVF 394
           ++LT GWS+FV  K L AGD+ VF
Sbjct: 187 HLLTTGWSTFVTSKRLVAGDAFVF 210

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>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 486 YWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           Y  ++Q ++LT GW++F   K L  GD IVF     G+
Sbjct: 182 YRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGE 219

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>RIMK_HAEI8 (Q4QKP3) Ribosomal protein S6 modification protein|
          Length = 302

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -1

Query: 411 GDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALPLPVVETAKGEQDHVVKLFGVDIAGV 232
           GD +V +    GQ+ +   NC +     GGKT   + + +  K       K  G+D+AGV
Sbjct: 201 GDQVVATMQRIGQDGEFRANCHR-----GGKTE-KIILSDDEKQIAIRATKAIGLDVAGV 254

Query: 231 KRVRAATGEL 202
             +R+  G L
Sbjct: 255 DLIRSKNGLL 264

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>RIMK_HAEIN (P45241) Ribosomal protein S6 modification protein|
          Length = 302

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -1

Query: 411 GDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALPLPVVETAKGEQDHVVKLFGVDIAGV 232
           GD +V +    GQ  +   NC +     GGKT   + + +  K       K  G+D+AGV
Sbjct: 201 GDQVVATMQRIGQNGEFRANCHR-----GGKTE-KITLSDEEKQIAIQATKAIGLDVAGV 254

Query: 231 KRVRAATGEL 202
             +R+  G L
Sbjct: 255 DLIRSKKGLL 264

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>TNR1B_RAT (Q80WY6) Tumor necrosis factor receptor superfamily member 1B|
           precursor (Tumor necrosis factor receptor 2) (TNF-R2)
           (Tumor necrosis factor receptor type II) (p75) (p80
           TNF-alpha receptor)
          Length = 474

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/112 (22%), Positives = 40/112 (35%)
 Frame = +2

Query: 86  REEKNICRCMCRCYKAKTPREGEC*PCATDCLLNNSGGPSSPVAARTLFTPAMSTPNNLT 265
           +++  +C C    Y A     G C      C+  +  GP   VA       + ++  N+ 
Sbjct: 113 KKQNRVCACNADSYCALKLHSGNC----RQCMKLSKCGPGFGVAR------SRTSNGNVI 162

Query: 266 TWSCSPLAVSTTGSGNAVLPPFIVVFFLQLMNNCFSCPYAEEEKTMESPAPR 421
             +C+P   S T S   V  P  +   L +  N  +      E    S  PR
Sbjct: 163 CSACAPGTFSDTTSSTDVCRPHRICSILAIPGNASTDAVCASESPTPSAVPR 214

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>TNR1B_MOUSE (P25119) Tumor necrosis factor receptor superfamily member 1B|
           precursor (Tumor necrosis factor receptor 2) (TNF-R2)
           (Tumor necrosis factor receptor type II) (p75) (p80
           TNF-alpha receptor)
          Length = 474

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 25/112 (22%), Positives = 40/112 (35%)
 Frame = +2

Query: 86  REEKNICRCMCRCYKAKTPREGEC*PCATDCLLNNSGGPSSPVAARTLFTPAMSTPNNLT 265
           +++  +C C    Y A     G C      C+  +  GP   VA+      + +   N+ 
Sbjct: 113 KQQNRVCACEAGRYCALKTHSGSC----RQCMRLSKCGPGFGVAS------SRAPNGNVL 162

Query: 266 TWSCSPLAVSTTGSGNAVLPPFIVVFFLQLMNNCFSCPYAEEEKTMESPAPR 421
             +C+P   S T S   V  P  +   L +  N  +      E    S  PR
Sbjct: 163 CKACAPGTFSDTTSSTDVCRPHRICSILAIPGNASTDAVCAPESPTLSAIPR 214

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>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 465 YVLTKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           ++L  GWS FV  K L AGD+ +F     G+
Sbjct: 227 HLLQSGWSVFVSSKRLVAGDAFIFLRGENGE 257

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>YNJ5_CAEEL (P34549) Hypothetical protein R10E11.5|
          Length = 529

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 348 KKNTTMNGGKTALPLPVVETAKGEQDHVVKLFGVDIAG----VKRVRAATGELGP 196
           KK+   N  KT + +P  + A+ +Q+HV      +IAG      R+++ T E  P
Sbjct: 182 KKSLGKNDSKTTIEIPTPKAAETQQEHVKFAHAPEIAGNSQKAVRIQSETQEEAP 236

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>MUTL_THEAQ (P96082) DNA mismatch repair protein mutL|
          Length = 533

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
 Frame = -1

Query: 447 WSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTALPLPVVETAKGEQDH 268
           W++F     L   +  V+    +   +++            G   LP PV+     E   
Sbjct: 343 WATFRESYLLAEAEDAVYIVDQHAAHERILFEELLARLREEGLKPLPYPVLVELDEEPPE 402

Query: 267 VVKLFGVDIAGVKRVRAATG-------ELGPPELFKRQSVAHGQ 157
              LFG++  G  RVR  +         L PPE+F+      G+
Sbjct: 403 ASPLFGIEGFGPGRVRLLSAPPFLHPYPLLPPEIFRESLKGEGR 446

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>SYI_PSEPK (Q88Q92) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 420 LGAGDSIVFSSSAYGQEKQLFINCKKNTTMN 328
           LGAG  +V SS AYG++   F+ CK+   +N
Sbjct: 321 LGAGTGVVHSSPAYGEDD--FVTCKRYGMVN 349

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>YA71_SCHPO (Q09758) Hypothetical protein C24H6.01c in chromosome I|
          Length = 588

 Score = 25.4 bits (54), Expect(2) = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 80  DIREEKNICRCMCRCYKA 133
           DI   +NI RCMC  Y A
Sbjct: 407 DIEPPENIVRCMCNNYSA 424



 Score = 22.7 bits (47), Expect(2) = 4.6
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 238 GDVNTEQLNDVVLFSFGSLHHWQRQRCFAAVHSRVLFAVDE*LLLLPVRRGG 393
           G  N   LN  ++F+F +L H      FA     VLF + E L     RR G
Sbjct: 448 GGSNHSILNLFIIFTFVALWHDISWELFAWGWLIVLFILPERLCCFMSRRTG 499

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>ACM5_MACMU (P56490) Muscarinic acetylcholine receptor M5|
          Length = 532

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 215 AARTLFTPAMSTPN--------NLTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLMNNCF 370
           A R LF   +  P         N T+WS S  + ST+G  +    P       + +  C 
Sbjct: 245 AHRALFRSCLRCPRPTLAQRERNQTSWSSSRRSASTSGKPSQATDPSTNQAKAEQLTTCS 304

Query: 371 SCPYAEEEKTMESPAPRP 424
           S P +E+E   + PA  P
Sbjct: 305 SYPSSEDE---DKPATDP 319

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>NU4M_PANTR (P03906) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +2

Query: 260 LTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLMNNCFSCPYAEEEKTMESPAPRPFSRTK 439
           LT +S   +    T + + ++    ++FF Q+ NN FSC               PFS   
Sbjct: 14  LTWFSKKRMIWINTTTHSLIISTIPLLFFNQINNNLFSCSL-------------PFSSDP 60

Query: 440 LLQPLVST*LWLL 478
           L  PL+    WLL
Sbjct: 61  LTTPLLMLTAWLL 73

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>5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6) (ST-B17)
          Length = 436

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +2

Query: 104 CRCMCRCYKAKTPREGEC*PCATD----CLLNNSGGPSSPVAARTLFTPAMSTPNNLTTW 271
           C C+CR  + +TP +G    C++     CL    G P  P        P  ST  + T W
Sbjct: 370 CLCLCRQTQIQTPLQGAPRACSSQPSFCCLERPPGTPRHPPG-----PPLWSTSLSQTLW 424

Query: 272 S 274
           S
Sbjct: 425 S 425

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>TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor|
          Length = 667

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/79 (25%), Positives = 29/79 (36%)
 Frame = +2

Query: 92  EKNICRCMCRCYKAKTPREGEC*PCATDCLLNNSGGPSSPVAARTLFTPAMSTPNNLTTW 271
           E  IC    RC   K P +G+C     +    N+ G      A  +     S P N    
Sbjct: 34  ETEICT---RCQTGKVPIDGKCVDATANANCKNASGDGD---ANQVCGKMSSVPGNTLCT 87

Query: 272 SCSPLAVSTTGSGNAVLPP 328
           + SP  V +  +    +PP
Sbjct: 88  TVSPDGVCSVAANEYFVPP 106

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>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1|
           precursor
          Length = 1802

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +2

Query: 191 SGGPSSPVAARTLFTPAMSTP----NNLTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLM 358
           +  PS+PVA  + +T + S P    +  T+   +P+AVS+T + +   P  I   +    
Sbjct: 505 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAISSTY---- 560

Query: 359 NNCFSCPYAEEEKTMESP-APRPFSRTKLLQPLV 457
            +  S P A       SP AP   S T    P V
Sbjct: 561 TSSPSAPVAVSSTYTSSPSAPVAISSTYTSSPSV 594



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +2

Query: 191 SGGPSSPVAARTLFTPAMSTP----NNLTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLM 358
           +  PS+PVA  + +T + S P    +  T+    P+AVS+T + +   P  I   +    
Sbjct: 561 TSSPSAPVAVSSTYTSSPSAPVAISSTYTSSPSVPVAVSSTYTSSPSAPAAISSTY---- 616

Query: 359 NNCFSCPYAEEEKTMESP-APRPFSRTKLLQPLV 457
            +  S P A       SP AP   S T    P V
Sbjct: 617 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSV 650



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +2

Query: 191 SGGPSSPVAARTLFTPAMSTP----NNLTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLM 358
           +  PS+PVA  + +T + S P    +  T+   +P+AVS+T + +   P    V      
Sbjct: 533 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAP----VAISSTY 588

Query: 359 NNCFSCPYAEEEKTMESP-APRPFSRTKLLQP 451
            +  S P A       SP AP   S T    P
Sbjct: 589 TSSPSVPVAVSSTYTSSPSAPAAISSTYTSSP 620

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>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -1

Query: 483 WNSSQSYVL----TKGWSSFVREKGLGAGDSIVFSSSAYGQ 373
           W    SY +    T GW++F   K L  GD IVF+    G+
Sbjct: 176 WRFKHSYRVPRGDTTGWNAFTTSKKLVVGDVIVFARGETGE 216

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>ACM5_MOUSE (Q920H4) Muscarinic acetylcholine receptor M5|
          Length = 532

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
 Frame = +2

Query: 215 AARTLFTPAMSTPN--------NLTTWSCSPLAVSTTGSGNAVLPPFIVVFFLQLMNNCF 370
           A RTL     S P         N  +WS S  + STTG               + + NC 
Sbjct: 245 AHRTLLRSFFSCPRPSLAQRERNQASWSSSRRSTSTTGKPTQATDLSADWEKAEQVTNCS 304

Query: 371 SCPYAEEE 394
           SCP +E+E
Sbjct: 305 SCPSSEDE 312

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>XYLT_ARATH (Q9LDH0) Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)|
          Length = 534

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 SHPLHTGDVNTEQLNDVVLFSFGSLHHW 303
           +HP H G V +  +N+  +F   SLHHW
Sbjct: 399 AHPRHGGKVQSRLINEEEVFD--SLHHW 424

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>SYI_PSEF5 (Q4K5U4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 420 LGAGDSIVFSSSAYGQEKQLFINCKKNTTMN 328
           LGAG  +V S+ AYG++   F+ CK+   +N
Sbjct: 321 LGAGTGVVHSAPAYGEDD--FVTCKRYGMVN 349

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>MRKD_KLEPN (P21648) Fimbria adhesin protein precursor|
          Length = 321

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/86 (19%), Positives = 32/86 (37%)
 Frame = -1

Query: 489 SYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAYGQEKQLFINCKKNTTMNGGKTAL 310
           S W S+ +Y +       V    L  G  I   +        +++ C +NTT+      +
Sbjct: 21  SCWQSNSAYEINMAMGRVVVSPDLPVGSVIATKTWTMPDNNTIYVTCDRNTTLKSDAKVV 80

Query: 309 PLPVVETAKGEQDHVVKLFGVDIAGV 232
              +V+ A        K++   I G+
Sbjct: 81  AAGLVQGAN-------KVYSTAIPGI 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,357,152
Number of Sequences: 219361
Number of extensions: 1109522
Number of successful extensions: 3792
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3787
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result