Clone Name | rbart40d04 |
---|---|
Clone Library Name | barley_pub |
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/75 (33%), Positives = 34/75 (45%) Frame = +2 Query: 299 RTA*TKPKSNPSATLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAA 478 + A TKP S P+A PA + V T ++T R P AM A PN Sbjct: 993 KPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM-------------QARPNTTQ 1039 Query: 479 PWQPGSATATTTLKE 523 P ++T TTT+K+ Sbjct: 1040 AAAPVTST-TTTIKQ 1053
>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase| receptor-associated protein) (Endocytic receptor 180) (CD280 antigen) Length = 1479 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -2 Query: 303 VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 172 VLMA+L L AL Y RR++++ G RY++ SS + A Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462
>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 306 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 187 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901
>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 306 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 187 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901
>ORML3_RAT (Q6QI25) ORM1-like protein 3 (Liver regeneration-related protein| LRRGT00183) Length = 153 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 87 FLNTVQAILFLYTQFYTKYDEV 22 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_PONPY (Q5R570) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 87 FLNTVQAILFLYTQFYTKYDEVSTTL 10 FL +L+ T FYTKYD++ L Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126
>ORML3_MOUSE (Q9CPZ6) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 87 FLNTVQAILFLYTQFYTKYDEV 22 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_HUMAN (Q8N138) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 87 FLNTVQAILFLYTQFYTKYDEVSTTL 10 FL +L+ T FYTKYD++ L Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126
>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989| Length = 198 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 399 ALAAVLSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLFALCAMTAF 253 A L PV + G + ALG+LLGF + V LMALL + A+ F Sbjct: 89 AFVGHLYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWIGVAALFRF 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,017,112 Number of Sequences: 219361 Number of extensions: 1259844 Number of successful extensions: 3524 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3524 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)