ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYO1_SCHPO (Q9Y7Z8) Myosin-1 32 1.1
2MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Uro... 30 3.1
3NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor (Na(+)/Ca... 30 4.0
4NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor (Na(+)/... 30 5.3
5ORML3_RAT (Q6QI25) ORM1-like protein 3 (Liver regeneration-relat... 29 9.0
6ORML3_PONPY (Q5R570) ORM1-like protein 3 29 9.0
7ORML3_MOUSE (Q9CPZ6) ORM1-like protein 3 29 9.0
8ORML3_HUMAN (Q8N138) ORM1-like protein 3 29 9.0
9Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989 29 9.0

>MYO1_SCHPO (Q9Y7Z8) Myosin-1|
          Length = 1217

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 25/75 (33%), Positives = 34/75 (45%)
 Frame = +2

Query: 299  RTA*TKPKSNPSATLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAA 478
            + A TKP S P+A   PA +   V T ++T  R P  AM              A PN   
Sbjct: 993  KPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM-------------QARPNTTQ 1039

Query: 479  PWQPGSATATTTLKE 523
               P ++T TTT+K+
Sbjct: 1040 AAAPVTST-TTTIKQ 1053



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>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase|
            receptor-associated protein) (Endocytic receptor 180)
            (CD280 antigen)
          Length = 1479

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 303  VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 172
            VLMA+L L AL       Y RR++++ G     RY++ SS  + A
Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462



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>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 306 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 187
           A  + L  +FA   ++   Y RR ++ G+LG  R  KL++
Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901



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>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 306 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 187
           A  + L  +FA   ++   Y RR ++ G+LG  R  KL++
Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901



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>ORML3_RAT (Q6QI25) ORM1-like protein 3 (Liver regeneration-related protein|
           LRRGT00183)
          Length = 153

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 87  FLNTVQAILFLYTQFYTKYDEV 22
           FL     +L+  T FYTKYD+V
Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122



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>ORML3_PONPY (Q5R570) ORM1-like protein 3|
          Length = 153

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 87  FLNTVQAILFLYTQFYTKYDEVSTTL 10
           FL     +L+  T FYTKYD++   L
Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126



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>ORML3_MOUSE (Q9CPZ6) ORM1-like protein 3|
          Length = 153

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 87  FLNTVQAILFLYTQFYTKYDEV 22
           FL     +L+  T FYTKYD+V
Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122



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>ORML3_HUMAN (Q8N138) ORM1-like protein 3|
          Length = 153

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 87  FLNTVQAILFLYTQFYTKYDEVSTTL 10
           FL     +L+  T FYTKYD++   L
Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126



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>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989|
          Length = 198

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 399 ALAAVLSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLFALCAMTAF 253
           A    L PV    +   G + ALG+LLGF + V LMALL    + A+  F
Sbjct: 89  AFVGHLYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWIGVAALFRF 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,017,112
Number of Sequences: 219361
Number of extensions: 1259844
Number of successful extensions: 3524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3524
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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