Clone Name | rbart40d02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1577 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1492 caactcaaactcaaccctatgatggtaaa 1464
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1578 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1493 caactcaaactcaaccctatgatggtaaa 1465
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1619 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1534 caactcaaactcaaccctatgatggtaaa 1506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 29843528 caactcaaactcaaccctatgatggtaaa 29843500
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 99873 caactcaaactcaaccctatgatggtaaa 99845
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 493 caactcaaactcaaccctatgatggtaaa 465
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full insert sequence Length = 1578 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1493 caactcaaactcaaccctatgatggtaaa 1465
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full insert sequence Length = 1577 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1492 caactcaaactcaaccctatgatggtaaa 1464
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full insert sequence Length = 1618 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1533 caactcaaactcaaccctatgatggtaaa 1505
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator, complete cds Length = 1564 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 86 caactcaaactcaaccctatgatagtaaa 114 ||||||||||||||||||||||| ||||| Sbjct: 1478 caactcaaactcaaccctatgatggtaaa 1450
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12, ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene, tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19, ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An d48 Length = 82868 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 ctggagttcgatgcctccacc 171 ||||||||||||||||||||| Sbjct: 45484 ctggagttcgatgcctccacc 45504
>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 Length = 307120 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aaaaacgaatggtgggaaaa 191 |||||||||||||||||||| Sbjct: 257704 aaaaacgaatggtgggaaaa 257685
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 103196 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagggcacatactccaactcaaac 95 ||||||||| |||||||||||||| Sbjct: 18960 cagggcacaaactccaactcaaac 18937
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete sequence Length = 288721 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 cagggcacatactccaactcaaac 95 ||||||||| |||||||||||||| Sbjct: 105772 cagggcacaaactccaactcaaac 105795
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 catactccaactcaaactcaaccc 102 ||||||| |||||||||||||||| Sbjct: 48909 catactcaaactcaaactcaaccc 48932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,798,928 Number of Sequences: 3902068 Number of extensions: 1798928 Number of successful extensions: 28360 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28338 Number of HSP's gapped (non-prelim): 22 length of query: 237 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 215 effective length of database: 17,147,199,772 effective search space: 3686647950980 effective search space used: 3686647950980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)