ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
2ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.003
3ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.003
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
5dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
7dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
8dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
9dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
10dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 50 0.003
11emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 0.77
12emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segme... 40 3.0
13gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell P... 40 3.0
14gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 ... 40 3.0
15dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 3.0

>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1492 caactcaaactcaaccctatgatggtaaa 1464



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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1493 caactcaaactcaaccctatgatggtaaa 1465



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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1534 caactcaaactcaaccctatgatggtaaa 1506



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 86       caactcaaactcaaccctatgatagtaaa 114
                ||||||||||||||||||||||| |||||
Sbjct: 29843528 caactcaaactcaaccctatgatggtaaa 29843500



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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 86    caactcaaactcaaccctatgatagtaaa 114
             ||||||||||||||||||||||| |||||
Sbjct: 99873 caactcaaactcaaccctatgatggtaaa 99845



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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 86  caactcaaactcaaccctatgatagtaaa 114
           ||||||||||||||||||||||| |||||
Sbjct: 493 caactcaaactcaaccctatgatggtaaa 465



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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1493 caactcaaactcaaccctatgatggtaaa 1465



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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1492 caactcaaactcaaccctatgatggtaaa 1464



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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1533 caactcaaactcaaccctatgatggtaaa 1505



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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   caactcaaactcaaccctatgatagtaaa 114
            ||||||||||||||||||||||| |||||
Sbjct: 1478 caactcaaactcaaccctatgatggtaaa 1450



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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ctggagttcgatgcctccacc 171
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504



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>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6
          Length = 307120

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    aaaaacgaatggtgggaaaa 191
              ||||||||||||||||||||
Sbjct: 257704 aaaaacgaatggtgggaaaa 257685



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>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 103196

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    cagggcacatactccaactcaaac 95
             ||||||||| ||||||||||||||
Sbjct: 18960 cagggcacaaactccaactcaaac 18937



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>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete
              sequence
          Length = 288721

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     cagggcacatactccaactcaaac 95
              ||||||||| ||||||||||||||
Sbjct: 105772 cagggcacaaactccaactcaaac 105795



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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    catactccaactcaaactcaaccc 102
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,798,928
Number of Sequences: 3902068
Number of extensions: 1798928
Number of successful extensions: 28360
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28338
Number of HSP's gapped (non-prelim): 22
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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